Wall clock time and date at job start Sat Apr 11 2020 06:18:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31566 * 1 3 3 Si 1.86798 * 120.00110 * 2 1 4 4 H 1.48497 * 109.47394 * 270.00097 * 3 2 1 5 5 H 1.48496 * 109.47029 * 30.00490 * 3 2 1 6 6 H 1.48504 * 109.46781 * 149.99782 * 3 2 1 7 7 C 1.38663 * 119.99556 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00282 * 359.97438 * 7 2 1 9 9 O 1.34825 * 119.99447 * 180.02562 * 7 2 1 10 10 C 1.35749 * 116.99765 * 185.05346 * 9 7 2 11 11 C 1.38896 * 120.07171 * 354.46588 * 10 9 7 12 12 C 1.38074 * 119.93641 * 180.02562 * 11 10 9 13 13 C 1.38327 * 120.06758 * 359.97438 * 12 11 10 14 14 C 1.38276 * 120.13812 * 0.02562 * 13 12 11 15 15 C 1.50695 * 119.96740 * 180.02562 * 14 13 12 16 16 C 1.50697 * 109.47645 * 89.99847 * 15 14 13 17 17 O 1.21287 * 119.99456 * 0.02562 * 16 15 14 18 18 N 1.34767 * 120.00646 * 179.97438 * 16 15 14 19 19 C 1.46494 * 120.00487 * 180.02562 * 18 16 15 20 20 H 1.09003 * 109.50941 * 324.99949 * 19 18 16 21 21 C 1.53156 * 109.54926 * 204.88693 * 19 18 16 22 22 C 1.53252 * 109.50162 * 170.57392 * 21 19 18 23 23 N 1.46473 * 108.80350 * 50.36360 * 22 21 19 24 24 C 1.36311 * 127.77849 * 162.83702 * 23 22 21 25 25 C 1.34848 * 106.68643 * 180.02562 * 24 23 22 26 26 N 1.34289 * 108.07636 * 359.97438 * 25 24 23 27 27 C 1.30094 * 109.20873 * 359.96794 * 26 25 24 28 28 C 1.51046 * 127.38900 * 180.02562 * 27 26 25 29 29 C 1.38124 * 120.06946 * 0.27338 * 14 13 12 30 30 H 0.97001 * 119.99292 * 359.97438 * 1 2 3 31 31 H 1.08006 * 120.03291 * 359.97240 * 11 10 9 32 32 H 1.07999 * 119.96620 * 179.97438 * 12 11 10 33 33 H 1.07997 * 119.93188 * 180.02562 * 13 12 11 34 34 H 1.09007 * 109.47168 * 329.99717 * 15 14 13 35 35 H 1.09005 * 109.47313 * 210.00051 * 15 14 13 36 36 H 0.97003 * 119.99642 * 0.02562 * 18 16 15 37 37 H 1.09005 * 109.46078 * 290.57271 * 21 19 18 38 38 H 1.08997 * 109.46686 * 50.55724 * 21 19 18 39 39 H 1.09006 * 109.57101 * 290.57208 * 22 21 19 40 40 H 1.09001 * 109.59253 * 170.16658 * 22 21 19 41 41 H 1.08002 * 126.65199 * 0.08703 * 24 23 22 42 42 H 1.08001 * 125.96325 * 179.97438 * 25 24 23 43 43 H 1.08999 * 109.71417 * 44.33729 * 28 27 26 44 44 H 1.09007 * 109.74824 * 283.72072 * 28 27 26 45 45 H 1.07999 * 120.03714 * 179.70655 * 29 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3157 0.0000 0.0000 3 14 2.2497 1.6177 0.0000 4 1 2.4972 2.0464 -1.4000 5 1 1.4472 2.6526 0.7001 6 1 3.5472 1.4400 0.7001 7 6 2.0089 -1.2009 -0.0005 8 1 1.4689 -2.1362 -0.0005 9 8 3.3571 -1.2009 0.0000 10 6 3.9734 -2.4057 -0.1071 11 6 3.2234 -3.5746 -0.0952 12 6 3.8532 -4.7986 -0.2038 13 6 5.2297 -4.8613 -0.3249 14 6 5.9793 -3.6994 -0.3371 15 6 7.4786 -3.7723 -0.4699 16 6 7.8564 -3.7327 -1.9281 17 8 6.9931 -3.6527 -2.7762 18 7 9.1536 -3.7852 -2.2899 19 6 9.5209 -3.7461 -3.7076 20 1 8.7681 -4.2737 -4.2933 21 6 10.8836 -4.4175 -3.9026 22 6 11.1603 -4.5878 -5.4003 23 7 10.9366 -3.3049 -6.0706 24 6 11.3635 -2.9234 -7.3076 25 6 10.9220 -1.6635 -7.4981 26 7 10.2424 -1.2899 -6.4018 27 6 10.2454 -2.2669 -5.5427 28 6 9.6029 -2.2882 -4.1759 29 6 5.3557 -2.4723 -0.2227 30 1 -0.4849 0.8401 0.0004 31 1 2.1486 -3.5263 -0.0002 32 1 3.2705 -5.7078 -0.1942 33 1 5.7200 -5.8198 -0.4101 34 1 7.8379 -4.7010 -0.0265 35 1 7.9306 -2.9249 0.0457 36 1 9.8441 -3.8488 -1.6116 37 1 11.6613 -3.7966 -3.4579 38 1 10.8792 -5.3951 -3.4204 39 1 10.4861 -5.3383 -5.8132 40 1 12.1937 -4.9017 -5.5476 41 1 11.9421 -3.5157 -8.0010 42 1 11.0863 -1.0602 -8.3787 43 1 8.6009 -1.8631 -4.2339 44 1 10.2072 -1.7112 -3.4758 45 1 5.9421 -1.5654 -0.2275 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000779098053.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:56 Heat of formation + Delta-G solvation = -0.455429 kcal Electronic energy + Delta-G solvation = -28299.526876 eV Core-core repulsion = 24282.594783 eV Total energy + Delta-G solvation = -4016.932093 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -43.28692 -41.21287 -40.54484 -38.50815 -37.71707 -35.18813 -34.48789 -33.73434 -32.90119 -31.08136 -30.74544 -29.35712 -28.10420 -27.16060 -25.28307 -23.56541 -23.17525 -22.56170 -22.17848 -21.39467 -20.12767 -19.64923 -18.90820 -18.18515 -17.74626 -17.42200 -16.87211 -16.75469 -16.52491 -16.13312 -15.76005 -15.67624 -15.35033 -15.09679 -15.06330 -14.80871 -14.64657 -14.62688 -14.37609 -14.14854 -13.94608 -13.84435 -13.13446 -13.05519 -12.98970 -12.75684 -12.51825 -12.43511 -12.34358 -12.33545 -12.12964 -11.92332 -11.31720 -11.01842 -10.95310 -10.87302 -10.56615 -10.20043 -9.65627 -9.31774 -9.05524 -8.51465 -6.23845 0.49528 0.71144 1.07545 1.28168 1.33709 1.49176 1.69024 1.85828 2.08194 2.14911 2.26494 2.77664 3.02929 3.17203 3.36494 3.52876 3.55885 3.77910 3.79657 4.07730 4.08916 4.13975 4.21128 4.29976 4.31831 4.42439 4.46959 4.54669 4.56951 4.63474 4.67933 4.68520 4.73112 4.85423 4.91830 4.98608 5.04744 5.26188 5.30618 5.39191 5.44346 5.65890 5.73448 5.76969 5.82600 5.91952 6.22236 6.26248 6.61222 6.83109 7.14165 7.34909 7.58732 8.60484 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.012994 B = 0.002423 C = 0.002138 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2154.377923 B =11554.452059 C =13094.055219 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C 0.009 3.991 3 Si 0.970 3.030 4 H -0.271 1.271 5 H -0.263 1.263 6 H -0.261 1.261 7 C -0.399 4.399 8 H 0.080 0.920 9 O -0.248 6.248 10 C 0.116 3.884 11 C -0.242 4.242 12 C -0.080 4.080 13 C -0.169 4.169 14 C -0.028 4.028 15 C -0.089 4.089 16 C 0.515 3.485 17 O -0.577 6.577 18 N -0.707 5.707 19 C 0.150 3.850 20 H 0.068 0.932 21 C -0.130 4.130 22 C 0.099 3.901 23 N -0.456 5.456 24 C -0.037 4.037 25 C -0.069 4.069 26 N -0.541 5.541 27 C 0.192 3.808 28 C -0.043 4.043 29 C -0.183 4.183 30 H 0.285 0.715 31 H 0.105 0.895 32 H 0.140 0.860 33 H 0.152 0.848 34 H 0.149 0.851 35 H 0.129 0.871 36 H 0.424 0.576 37 H 0.097 0.903 38 H 0.131 0.869 39 H 0.096 0.904 40 H 0.131 0.869 41 H 0.216 0.784 42 H 0.180 0.820 43 H 0.060 0.940 44 H 0.103 0.897 45 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 32.892 -15.247 -6.616 36.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.189 4.189 3 Si 0.792 3.208 4 H -0.196 1.196 5 H -0.187 1.187 6 H -0.185 1.185 7 C -0.475 4.475 8 H 0.097 0.903 9 O -0.156 6.156 10 C 0.068 3.932 11 C -0.261 4.261 12 C -0.098 4.098 13 C -0.188 4.188 14 C -0.029 4.029 15 C -0.128 4.128 16 C 0.303 3.697 17 O -0.455 6.455 18 N -0.361 5.361 19 C 0.043 3.957 20 H 0.087 0.913 21 C -0.168 4.168 22 C -0.022 4.022 23 N -0.139 5.139 24 C -0.171 4.171 25 C -0.216 4.216 26 N -0.261 5.261 27 C -0.072 4.072 28 C -0.083 4.083 29 C -0.202 4.202 30 H 0.094 0.906 31 H 0.123 0.877 32 H 0.157 0.843 33 H 0.169 0.831 34 H 0.167 0.833 35 H 0.147 0.853 36 H 0.263 0.737 37 H 0.116 0.884 38 H 0.149 0.851 39 H 0.115 0.885 40 H 0.149 0.851 41 H 0.233 0.767 42 H 0.198 0.802 43 H 0.079 0.921 44 H 0.121 0.879 45 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 31.848 -14.268 -6.999 35.593 hybrid contribution -0.504 0.427 -0.278 0.717 sum 31.343 -13.841 -7.277 35.028 Atomic orbital electron populations 1.69735 1.06830 1.29543 1.50413 1.25282 0.95921 1.02111 0.95604 0.85233 0.78948 0.77517 0.79100 1.19634 1.18727 1.18526 1.20712 0.78187 0.96097 1.52538 0.90279 1.83504 1.21183 1.27491 1.83401 1.19636 0.93222 0.85139 0.95239 1.21321 1.00109 0.93547 1.11165 1.21126 0.95663 0.96163 0.96802 1.21036 0.93120 0.98586 1.06031 1.19264 0.95681 0.91403 0.96519 1.20721 0.91006 1.08549 0.92533 1.21026 0.82451 0.74605 0.91646 1.90803 1.50662 1.49770 1.54277 1.45715 1.07299 1.75381 1.07732 1.20811 0.98168 0.93624 0.83057 0.91342 1.22170 0.94846 1.04716 0.95054 1.22328 1.05676 0.81826 0.92344 1.45698 1.39722 1.14182 1.14262 1.23147 1.06722 0.98267 0.88939 1.22813 1.03637 0.96425 0.98683 1.69988 1.22295 1.30091 1.03740 1.23254 1.00494 0.85188 0.98217 1.20552 0.99931 0.99326 0.88527 1.20314 0.90566 0.99137 1.10183 0.90581 0.87711 0.84253 0.83063 0.83286 0.85348 0.73668 0.88406 0.85133 0.88540 0.85137 0.76740 0.80239 0.92150 0.87918 0.86101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -57.48 13.96 21.62 0.30 -57.18 16 2 C 0.01 0.54 5.49 84.83 0.47 1.00 16 3 Si 0.97 47.91 28.62 68.60 1.96 49.87 16 4 H -0.27 -13.14 7.11 99.48 0.71 -12.43 16 5 H -0.26 -11.96 7.11 99.48 0.71 -11.25 16 6 H -0.26 -12.77 7.11 99.48 0.71 -12.07 16 7 C -0.40 -24.83 9.95 67.92 0.68 -24.16 16 8 H 0.08 5.15 5.44 -2.91 -0.02 5.14 16 9 O -0.25 -14.34 8.59 -22.69 -0.19 -14.54 16 10 C 0.12 5.83 6.65 22.58 0.15 5.98 16 11 C -0.24 -11.40 9.17 22.39 0.21 -11.20 16 12 C -0.08 -2.90 10.04 22.25 0.22 -2.68 16 13 C -0.17 -5.15 9.70 22.30 0.22 -4.93 16 14 C -0.03 -0.87 4.37 -19.88 -0.09 -0.95 16 15 C -0.09 -1.56 5.83 29.10 0.17 -1.39 16 16 C 0.51 11.08 7.79 87.66 0.68 11.76 16 17 O -0.58 -20.09 15.70 -3.05 -0.05 -20.14 16 18 N -0.71 -8.17 5.08 -441.75 -2.25 -10.41 16 19 C 0.15 2.06 2.47 45.16 0.11 2.17 16 20 H 0.07 1.37 7.56 -2.39 -0.02 1.36 16 21 C -0.13 -0.47 5.42 30.73 0.17 -0.30 16 22 C 0.10 0.50 6.98 86.47 0.60 1.10 16 23 N -0.46 -6.87 3.13 -513.83 -1.61 -8.48 16 24 C -0.04 -0.54 11.64 83.22 0.97 0.43 16 25 C -0.07 -1.49 11.87 83.54 0.99 -0.50 16 26 N -0.54 -15.70 11.24 -187.51 -2.11 -17.81 16 27 C 0.19 4.45 7.65 138.24 1.06 5.50 16 28 C -0.04 -0.89 5.91 30.07 0.18 -0.71 16 29 C -0.18 -7.43 9.65 22.39 0.22 -7.22 16 30 H 0.28 16.20 8.31 -92.71 -0.77 15.43 16 31 H 0.10 5.40 5.64 -2.91 -0.02 5.39 16 32 H 0.14 4.16 8.06 -2.91 -0.02 4.14 16 33 H 0.15 3.27 8.06 -2.91 -0.02 3.24 16 34 H 0.15 1.25 8.09 -2.38 -0.02 1.23 16 35 H 0.13 1.66 8.08 -2.38 -0.02 1.64 16 36 H 0.42 1.08 8.61 -92.71 -0.80 0.28 16 37 H 0.10 0.16 8.12 -2.38 -0.02 0.14 16 38 H 0.13 -0.25 8.14 -2.39 -0.02 -0.27 16 39 H 0.10 0.40 8.14 -2.38 -0.02 0.38 16 40 H 0.13 -0.15 8.14 -2.39 -0.02 -0.17 16 41 H 0.22 1.15 8.06 -2.91 -0.02 1.12 16 42 H 0.18 3.08 8.06 -2.91 -0.02 3.06 16 43 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 44 H 0.10 1.77 8.14 -2.38 -0.02 1.75 16 45 H 0.12 4.62 8.06 -2.91 -0.02 4.60 16 Total: -1.00 -93.62 379.06 3.28 -90.34 By element: Atomic # 1 Polarization: 14.21 SS G_CDS: 0.23 Total: 14.44 kcal Atomic # 6 Polarization: -33.08 SS G_CDS: 7.00 Total: -26.08 kcal Atomic # 7 Polarization: -88.22 SS G_CDS: -5.66 Total: -93.88 kcal Atomic # 8 Polarization: -34.44 SS G_CDS: -0.24 Total: -34.68 kcal Atomic # 14 Polarization: 47.91 SS G_CDS: 1.96 Total: 49.87 kcal Total: -93.62 3.28 -90.34 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000779098053.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.880 kcal (2) G-P(sol) polarization free energy of solvation -93.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.336 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.455 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds