Wall clock time and date at job start Sat Apr 11 2020 06:19:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86793 * 120.00214 * 2 1 4 4 H 1.48506 * 109.46991 * 271.64843 * 3 2 1 5 5 H 1.48502 * 109.47385 * 31.64634 * 3 2 1 6 6 H 1.48497 * 109.47260 * 151.64990 * 3 2 1 7 7 C 1.38813 * 119.99707 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99969 * 338.30831 * 7 2 1 9 9 N 1.36932 * 119.99713 * 158.30468 * 7 2 1 10 10 C 1.46925 * 120.63526 * 332.88837 * 9 7 2 11 11 C 1.53191 * 108.89652 * 233.67725 * 10 9 7 12 12 C 1.53041 * 109.31147 * 305.29498 * 11 10 9 13 13 O 1.45200 * 109.45972 * 181.38873 * 12 11 10 14 14 C 1.34824 * 117.00045 * 149.99814 * 13 12 11 15 15 O 1.21558 * 120.00421 * 359.97438 * 14 13 12 16 16 C 1.46915 * 119.99997 * 179.97438 * 14 13 12 17 17 C 1.38557 * 126.91302 * 186.14956 * 16 14 13 18 18 C 1.39651 * 105.36466 * 179.86017 * 17 16 14 19 19 N 1.30930 * 107.92228 * 0.41304 * 18 17 16 20 20 N 1.28448 * 110.97090 * 359.73596 * 19 18 17 21 21 C 1.40012 * 125.21823 * 180.02562 * 20 19 18 22 22 C 1.38880 * 120.07077 * 45.98560 * 21 20 19 23 23 C 1.38112 * 119.92486 * 179.67829 * 22 21 20 24 24 C 1.38286 * 120.07131 * 0.62168 * 23 22 21 25 25 C 1.38289 * 120.14152 * 359.67845 * 24 23 22 26 26 C 1.38106 * 120.07086 * 359.97438 * 25 24 23 27 27 C 1.53037 * 109.54269 * 61.36194 * 12 11 10 28 28 C 1.47211 * 120.81206 * 153.02844 * 9 7 2 29 29 H 0.97004 * 119.99268 * 0.02562 * 1 2 3 30 30 H 1.08999 * 109.58396 * 113.81463 * 10 9 7 31 31 H 1.09003 * 109.58184 * 353.53561 * 10 9 7 32 32 H 1.09004 * 109.49784 * 65.24132 * 11 10 9 33 33 H 1.08994 * 109.49755 * 185.33978 * 11 10 9 34 34 H 1.09007 * 109.45780 * 301.34195 * 12 11 10 35 35 H 1.08001 * 127.31551 * 359.97438 * 17 16 14 36 36 H 1.07991 * 126.03907 * 180.14961 * 18 17 16 37 37 H 1.08001 * 120.03652 * 0.02562 * 22 21 20 38 38 H 1.08006 * 119.96100 * 180.34725 * 23 22 21 39 39 H 1.07999 * 119.92917 * 179.70068 * 24 23 22 40 40 H 1.07997 * 119.96253 * 180.02562 * 25 24 23 41 41 H 1.08005 * 120.03639 * 180.02562 * 26 25 24 42 42 H 1.09003 * 109.49530 * 58.58895 * 27 12 11 43 43 H 1.08992 * 109.50110 * 178.65037 * 27 12 11 44 44 H 1.08999 * 109.53399 * 6.54099 * 28 9 7 45 45 H 1.08999 * 109.67800 * 246.23539 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.4629 2.0664 -1.3996 5 1 1.4656 2.6424 0.7346 6 1 3.5648 1.4302 0.6648 7 6 2.0102 -1.2022 0.0005 8 1 1.5276 -2.1042 0.3466 9 7 3.3068 -1.2444 -0.4378 10 6 3.7968 -0.2689 -1.4213 11 6 4.4209 -1.0231 -2.5996 12 6 5.4963 -1.9782 -2.0766 13 8 6.1129 -2.6709 -3.1939 14 6 7.4018 -3.0392 -3.0497 15 8 7.9941 -2.7879 -2.0184 16 6 8.0905 -3.7445 -4.1391 17 6 9.3636 -4.2902 -4.1032 18 6 9.5624 -4.8488 -5.3676 19 7 8.4849 -4.6303 -6.0786 20 7 7.6058 -3.9894 -5.3958 21 6 6.3449 -3.6013 -5.8648 22 6 5.5543 -4.5040 -6.5639 23 6 4.3082 -4.1200 -7.0193 24 6 3.8530 -2.8343 -6.7910 25 6 4.6404 -1.9312 -6.1006 26 6 5.8844 -2.3111 -5.6363 27 6 4.8582 -3.0000 -1.1327 28 6 4.2389 -2.2682 0.0623 29 1 -0.4849 0.8401 -0.0004 30 1 4.5476 0.3712 -0.9581 31 1 2.9658 0.3406 -1.7765 32 1 3.6489 -1.5927 -3.1170 33 1 4.8720 -0.3103 -3.2898 34 1 6.2552 -1.4107 -1.5380 35 1 10.0545 -4.2861 -3.2731 36 1 10.4499 -5.3657 -5.7014 37 1 5.9111 -5.5069 -6.7464 38 1 3.6906 -4.8233 -7.5582 39 1 2.8802 -2.5350 -7.1524 40 1 4.2818 -0.9280 -5.9235 41 1 6.4987 -1.6054 -5.0968 42 1 4.0821 -3.5509 -1.6639 43 1 5.6203 -3.6945 -0.7794 44 1 3.6982 -2.9798 0.6862 45 1 5.0261 -1.7932 0.6479 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000796771198.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:10 Heat of formation + Delta-G solvation = 61.473686 kcal Electronic energy + Delta-G solvation = -30319.742010 eV Core-core repulsion = 26305.495364 eV Total energy + Delta-G solvation = -4014.246645 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -43.08702 -40.35282 -39.24304 -37.78550 -36.12853 -33.87441 -32.78405 -31.68847 -31.05186 -30.58721 -30.39991 -29.45222 -25.70878 -24.33747 -23.55641 -23.16298 -22.79314 -21.84997 -21.45754 -20.30770 -19.72003 -18.91126 -17.29599 -17.01272 -16.63471 -16.49737 -16.17571 -15.63577 -15.22284 -14.89501 -14.64888 -14.27750 -14.15027 -13.95911 -13.85799 -13.65592 -13.51561 -13.25825 -13.05186 -12.88194 -12.50786 -12.12344 -11.93016 -11.86950 -11.54510 -11.35504 -11.32049 -10.92971 -10.87485 -10.70659 -10.53023 -10.23436 -10.12531 -9.94932 -9.83981 -9.53566 -9.47596 -9.16421 -8.72082 -8.69491 -7.10071 -6.01936 -3.37761 0.45229 1.12020 1.19757 2.06774 2.27938 2.52269 2.78170 3.24628 3.43908 3.46494 3.46618 4.29872 4.41267 4.46159 4.64172 4.67418 4.80836 4.86364 4.89876 5.03341 5.10232 5.12734 5.13857 5.26218 5.30757 5.33042 5.44592 5.51855 5.68549 5.72686 5.90078 5.94477 5.97971 6.05018 6.08444 6.14360 6.16381 6.24052 6.26625 6.39620 6.45729 6.50410 6.51876 6.57996 6.75945 6.83913 7.54847 7.73488 7.86445 8.25525 8.84828 9.63819 10.00234 11.13790 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.014774 B = 0.003618 C = 0.003154 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1894.722293 B = 7736.209834 C = 8876.242536 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.025 3.975 3 Si 0.878 3.122 4 H -0.287 1.287 5 H -0.301 1.301 6 H -0.271 1.271 7 C -0.262 4.262 8 H 0.087 0.913 9 N -0.605 5.605 10 C 0.129 3.871 11 C -0.126 4.126 12 C 0.097 3.903 13 O -0.344 6.344 14 C 0.534 3.466 15 O -0.489 6.489 16 C -0.023 4.023 17 C -0.146 4.146 18 C -0.001 4.001 19 N -0.264 5.264 20 N -0.214 5.214 21 C 0.113 3.887 22 C -0.094 4.094 23 C -0.113 4.113 24 C -0.100 4.100 25 C -0.102 4.102 26 C -0.071 4.071 27 C -0.147 4.147 28 C 0.152 3.848 29 H 0.263 0.737 30 H 0.027 0.973 31 H 0.083 0.917 32 H 0.078 0.922 33 H 0.061 0.939 34 H 0.082 0.918 35 H 0.171 0.829 36 H 0.195 0.805 37 H 0.131 0.869 38 H 0.133 0.867 39 H 0.132 0.868 40 H 0.136 0.864 41 H 0.128 0.872 42 H 0.073 0.927 43 H 0.060 0.940 44 H 0.070 0.930 45 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.039 -7.898 -14.794 22.526 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.174 4.174 3 Si 0.709 3.291 4 H -0.215 1.215 5 H -0.229 1.229 6 H -0.196 1.196 7 C -0.390 4.390 8 H 0.105 0.895 9 N -0.328 5.328 10 C 0.003 3.997 11 C -0.166 4.166 12 C 0.044 3.956 13 O -0.260 6.260 14 C 0.376 3.624 15 O -0.375 6.375 16 C -0.146 4.146 17 C -0.175 4.175 18 C -0.177 4.177 19 N -0.096 5.096 20 N 0.001 4.999 21 C 0.025 3.975 22 C -0.113 4.113 23 C -0.131 4.131 24 C -0.118 4.118 25 C -0.121 4.121 26 C -0.091 4.091 27 C -0.187 4.187 28 C 0.025 3.975 29 H 0.073 0.927 30 H 0.045 0.955 31 H 0.101 0.899 32 H 0.097 0.903 33 H 0.080 0.920 34 H 0.100 0.900 35 H 0.188 0.812 36 H 0.212 0.788 37 H 0.148 0.852 38 H 0.151 0.849 39 H 0.150 0.850 40 H 0.153 0.847 41 H 0.146 0.854 42 H 0.092 0.908 43 H 0.078 0.922 44 H 0.089 0.911 45 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges 14.436 -7.848 -15.457 22.559 hybrid contribution 0.932 1.053 0.981 1.714 sum 15.368 -6.795 -14.476 22.179 Atomic orbital electron populations 1.69850 1.05720 1.26642 1.52496 1.25266 0.95212 0.97509 0.99411 0.87025 0.80164 0.84801 0.77157 1.21481 1.22937 1.19570 1.18910 0.85311 0.95004 1.39739 0.89532 1.44479 1.09344 1.33470 1.45523 1.21378 0.97620 0.92067 0.88666 1.22259 0.96903 0.97470 0.99960 1.22971 0.94327 0.93313 0.85016 1.86832 1.24498 1.69231 1.45467 1.19605 0.81263 0.76462 0.85112 1.90892 1.67017 1.51646 1.27944 1.20975 0.96610 1.10115 0.86900 1.22279 0.94336 1.00971 0.99872 1.23727 0.97792 1.04410 0.91778 1.73320 0.99704 1.12347 1.24205 1.42907 1.11412 1.38195 1.07388 1.17452 0.82300 0.94682 1.03095 1.20969 0.93813 0.98949 0.97606 1.21035 0.95055 0.96740 1.00282 1.21372 0.99852 0.93361 0.97218 1.21049 0.93068 1.00604 0.97373 1.20950 0.97295 0.93347 0.97515 1.22456 1.00127 0.97949 0.98148 1.20930 0.92400 0.91462 0.92661 0.92672 0.95477 0.89934 0.90282 0.92027 0.90016 0.81152 0.78826 0.85156 0.84930 0.85043 0.84650 0.85444 0.90848 0.92161 0.91107 0.95444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.06 13.97 55.49 0.78 -26.28 16 2 C 0.03 0.71 5.21 -17.43 -0.09 0.62 16 3 Si 0.88 21.67 24.37 -169.99 -4.14 17.52 16 4 H -0.29 -6.71 6.56 56.52 0.37 -6.34 16 5 H -0.30 -7.60 7.11 56.52 0.40 -7.20 16 6 H -0.27 -6.62 6.79 56.52 0.38 -6.24 16 7 C -0.26 -7.12 10.04 -15.06 -0.15 -7.27 16 8 H 0.09 2.52 8.06 -52.49 -0.42 2.10 16 9 N -0.60 -13.97 2.78 -172.09 -0.48 -14.44 16 10 C 0.13 2.68 4.21 -3.71 -0.02 2.66 16 11 C -0.13 -2.13 5.74 -26.61 -0.15 -2.28 16 12 C 0.10 1.60 2.42 -26.69 -0.06 1.53 16 13 O -0.34 -5.20 5.77 -40.83 -0.24 -5.43 16 14 C 0.53 8.11 7.45 34.24 0.26 8.36 16 15 O -0.49 -8.34 16.19 -19.31 -0.31 -8.65 16 16 C -0.02 -0.31 6.77 -81.97 -0.55 -0.86 16 17 C -0.15 -1.61 10.86 -38.94 -0.42 -2.03 16 18 C 0.00 -0.01 12.03 -17.41 -0.21 -0.22 16 19 N -0.26 -3.24 11.70 30.59 0.36 -2.88 16 20 N -0.21 -2.81 3.44 -7.02 -0.02 -2.83 16 21 C 0.11 1.42 5.74 -83.65 -0.48 0.94 16 22 C -0.09 -1.03 9.81 -39.39 -0.39 -1.42 16 23 C -0.11 -1.06 10.04 -39.61 -0.40 -1.45 16 24 C -0.10 -0.95 10.04 -39.55 -0.40 -1.35 16 25 C -0.10 -1.08 10.04 -39.61 -0.40 -1.48 16 26 C -0.07 -0.85 7.10 -39.39 -0.28 -1.13 16 27 C -0.15 -2.53 5.72 -26.61 -0.15 -2.68 16 28 C 0.15 2.97 6.53 -3.55 -0.02 2.94 16 29 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 30 H 0.03 0.56 7.18 -51.93 -0.37 0.19 16 31 H 0.08 1.86 4.49 -51.93 -0.23 1.63 16 32 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 33 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 34 H 0.08 1.40 7.16 -51.92 -0.37 1.03 16 35 H 0.17 1.53 8.06 -52.49 -0.42 1.11 16 36 H 0.19 1.10 8.06 -52.49 -0.42 0.68 16 37 H 0.13 1.32 8.06 -52.49 -0.42 0.89 16 38 H 0.13 0.91 8.06 -52.48 -0.42 0.49 16 39 H 0.13 0.98 8.06 -52.49 -0.42 0.56 16 40 H 0.14 1.24 8.06 -52.49 -0.42 0.82 16 41 H 0.13 1.56 6.85 -52.48 -0.36 1.20 16 42 H 0.07 1.31 8.14 -51.93 -0.42 0.88 16 43 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 44 H 0.07 1.37 7.94 -51.93 -0.41 0.96 16 45 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 LS Contribution 367.48 15.07 5.54 5.54 Total: -1.00 -32.15 367.48 -8.45 -40.60 By element: Atomic # 1 Polarization: 7.97 SS G_CDS: -6.01 Total: 1.96 kcal Atomic # 6 Polarization: -1.18 SS G_CDS: -3.92 Total: -5.10 kcal Atomic # 7 Polarization: -47.07 SS G_CDS: 0.63 Total: -46.44 kcal Atomic # 8 Polarization: -13.54 SS G_CDS: -0.55 Total: -14.09 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -4.14 Total: 17.52 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -32.15 -8.45 -40.60 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000796771198.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.077 kcal (2) G-P(sol) polarization free energy of solvation -32.153 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.925 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.451 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.604 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.474 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds