Wall clock time and date at job start Sat Apr 11 2020 06:19:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86793 * 120.00214 * 2 1 4 4 H 1.48506 * 109.46991 * 271.64843 * 3 2 1 5 5 H 1.48502 * 109.47385 * 31.64634 * 3 2 1 6 6 H 1.48497 * 109.47260 * 151.64990 * 3 2 1 7 7 C 1.38813 * 119.99707 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99969 * 338.30831 * 7 2 1 9 9 N 1.36932 * 119.99713 * 158.30468 * 7 2 1 10 10 C 1.46925 * 120.63526 * 332.88837 * 9 7 2 11 11 C 1.53191 * 108.89652 * 233.67725 * 10 9 7 12 12 C 1.53041 * 109.31147 * 305.29498 * 11 10 9 13 13 O 1.45200 * 109.45972 * 181.38873 * 12 11 10 14 14 C 1.34824 * 117.00045 * 149.99814 * 13 12 11 15 15 O 1.21558 * 120.00421 * 359.97438 * 14 13 12 16 16 C 1.46915 * 119.99997 * 179.97438 * 14 13 12 17 17 C 1.38557 * 126.91302 * 186.14956 * 16 14 13 18 18 C 1.39651 * 105.36466 * 179.86017 * 17 16 14 19 19 N 1.30930 * 107.92228 * 0.41304 * 18 17 16 20 20 N 1.28448 * 110.97090 * 359.73596 * 19 18 17 21 21 C 1.40012 * 125.21823 * 180.02562 * 20 19 18 22 22 C 1.38880 * 120.07077 * 45.98560 * 21 20 19 23 23 C 1.38112 * 119.92486 * 179.67829 * 22 21 20 24 24 C 1.38286 * 120.07131 * 0.62168 * 23 22 21 25 25 C 1.38289 * 120.14152 * 359.67845 * 24 23 22 26 26 C 1.38106 * 120.07086 * 359.97438 * 25 24 23 27 27 C 1.53037 * 109.54269 * 61.36194 * 12 11 10 28 28 C 1.47211 * 120.81206 * 153.02844 * 9 7 2 29 29 H 0.97004 * 119.99268 * 0.02562 * 1 2 3 30 30 H 1.08999 * 109.58396 * 113.81463 * 10 9 7 31 31 H 1.09003 * 109.58184 * 353.53561 * 10 9 7 32 32 H 1.09004 * 109.49784 * 65.24132 * 11 10 9 33 33 H 1.08994 * 109.49755 * 185.33978 * 11 10 9 34 34 H 1.09007 * 109.45780 * 301.34195 * 12 11 10 35 35 H 1.08001 * 127.31551 * 359.97438 * 17 16 14 36 36 H 1.07991 * 126.03907 * 180.14961 * 18 17 16 37 37 H 1.08001 * 120.03652 * 0.02562 * 22 21 20 38 38 H 1.08006 * 119.96100 * 180.34725 * 23 22 21 39 39 H 1.07999 * 119.92917 * 179.70068 * 24 23 22 40 40 H 1.07997 * 119.96253 * 180.02562 * 25 24 23 41 41 H 1.08005 * 120.03639 * 180.02562 * 26 25 24 42 42 H 1.09003 * 109.49530 * 58.58895 * 27 12 11 43 43 H 1.08992 * 109.50110 * 178.65037 * 27 12 11 44 44 H 1.08999 * 109.53399 * 6.54099 * 28 9 7 45 45 H 1.08999 * 109.67800 * 246.23539 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.4629 2.0664 -1.3996 5 1 1.4656 2.6424 0.7346 6 1 3.5648 1.4302 0.6648 7 6 2.0102 -1.2022 0.0005 8 1 1.5276 -2.1042 0.3466 9 7 3.3068 -1.2444 -0.4378 10 6 3.7968 -0.2689 -1.4213 11 6 4.4209 -1.0231 -2.5996 12 6 5.4963 -1.9782 -2.0766 13 8 6.1129 -2.6709 -3.1939 14 6 7.4018 -3.0392 -3.0497 15 8 7.9941 -2.7879 -2.0184 16 6 8.0905 -3.7445 -4.1391 17 6 9.3636 -4.2902 -4.1032 18 6 9.5624 -4.8488 -5.3676 19 7 8.4849 -4.6303 -6.0786 20 7 7.6058 -3.9894 -5.3958 21 6 6.3449 -3.6013 -5.8648 22 6 5.5543 -4.5040 -6.5639 23 6 4.3082 -4.1200 -7.0193 24 6 3.8530 -2.8343 -6.7910 25 6 4.6404 -1.9312 -6.1006 26 6 5.8844 -2.3111 -5.6363 27 6 4.8582 -3.0000 -1.1327 28 6 4.2389 -2.2682 0.0623 29 1 -0.4849 0.8401 -0.0004 30 1 4.5476 0.3712 -0.9581 31 1 2.9658 0.3406 -1.7765 32 1 3.6489 -1.5927 -3.1170 33 1 4.8720 -0.3103 -3.2898 34 1 6.2552 -1.4107 -1.5380 35 1 10.0545 -4.2861 -3.2731 36 1 10.4499 -5.3657 -5.7014 37 1 5.9111 -5.5069 -6.7464 38 1 3.6906 -4.8233 -7.5582 39 1 2.8802 -2.5350 -7.1524 40 1 4.2818 -0.9280 -5.9235 41 1 6.4987 -1.6054 -5.0968 42 1 4.0821 -3.5509 -1.6639 43 1 5.6203 -3.6945 -0.7794 44 1 3.6982 -2.9798 0.6862 45 1 5.0261 -1.7932 0.6479 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000796771198.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:09 Heat of formation + Delta-G solvation = 44.117775 kcal Electronic energy + Delta-G solvation = -30320.494618 eV Core-core repulsion = 26305.495364 eV Total energy + Delta-G solvation = -4014.999254 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -43.96048 -41.58214 -40.03241 -39.29397 -37.48631 -34.82490 -34.51325 -32.77810 -32.30806 -32.02932 -31.71048 -30.25733 -27.31568 -25.61602 -24.70222 -24.26463 -23.86241 -23.39997 -22.29744 -21.31011 -21.25442 -19.93364 -18.93908 -18.32769 -17.72023 -17.47045 -17.12817 -17.08874 -16.63188 -16.00274 -15.71355 -15.66115 -15.43598 -15.21929 -14.82667 -14.66634 -14.63115 -14.53681 -14.44082 -14.24347 -13.94304 -13.66705 -13.56866 -12.88355 -12.61774 -12.59614 -12.47629 -12.36968 -12.21877 -12.18414 -12.05817 -11.74965 -11.66933 -11.48456 -11.16676 -10.93973 -10.73562 -10.46446 -9.96750 -9.51948 -9.03205 -8.17500 -5.50303 -0.46667 0.29386 0.33124 1.17257 1.29092 1.39608 1.43367 1.46576 1.51884 1.75193 2.40571 2.67889 3.00784 3.20676 3.33663 3.58431 3.64676 3.73100 3.85215 3.91519 3.98026 4.02817 4.18386 4.19243 4.28344 4.37176 4.40256 4.47713 4.51188 4.54012 4.60091 4.68336 4.80974 4.84837 4.86713 4.94490 4.96894 5.08448 5.13351 5.20265 5.32542 5.39006 5.39862 5.49648 5.60653 5.83414 5.95581 6.11057 6.41317 6.83876 6.86250 7.57492 7.97632 9.02068 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.014774 B = 0.003618 C = 0.003154 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1894.722293 B = 7736.209834 C = 8876.242536 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.953 5.953 2 C -0.029 4.029 3 Si 0.940 3.060 4 H -0.264 1.264 5 H -0.311 1.311 6 H -0.265 1.265 7 C -0.252 4.252 8 H 0.053 0.947 9 N -0.618 5.618 10 C 0.123 3.877 11 C -0.114 4.114 12 C 0.103 3.897 13 O -0.336 6.336 14 C 0.536 3.464 15 O -0.512 6.512 16 C -0.053 4.053 17 C -0.137 4.137 18 C 0.010 3.990 19 N -0.281 5.281 20 N -0.221 5.221 21 C 0.092 3.908 22 C -0.104 4.104 23 C -0.109 4.109 24 C -0.102 4.102 25 C -0.109 4.109 26 C -0.085 4.085 27 C -0.136 4.136 28 C 0.149 3.851 29 H 0.263 0.737 30 H 0.036 0.964 31 H 0.066 0.934 32 H 0.073 0.927 33 H 0.092 0.908 34 H 0.080 0.920 35 H 0.190 0.810 36 H 0.236 0.764 37 H 0.134 0.866 38 H 0.159 0.841 39 H 0.154 0.846 40 H 0.147 0.853 41 H 0.119 0.881 42 H 0.064 0.936 43 H 0.071 0.929 44 H 0.065 0.935 45 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.223 -8.081 -16.503 25.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.598 5.598 2 C -0.224 4.224 3 Si 0.769 3.231 4 H -0.191 1.191 5 H -0.240 1.240 6 H -0.190 1.190 7 C -0.381 4.381 8 H 0.071 0.929 9 N -0.343 5.343 10 C -0.002 4.002 11 C -0.153 4.153 12 C 0.049 3.951 13 O -0.252 6.252 14 C 0.380 3.620 15 O -0.400 6.400 16 C -0.176 4.176 17 C -0.165 4.165 18 C -0.165 4.165 19 N -0.113 5.113 20 N -0.006 5.006 21 C 0.003 3.997 22 C -0.124 4.124 23 C -0.127 4.127 24 C -0.120 4.120 25 C -0.128 4.128 26 C -0.105 4.105 27 C -0.175 4.175 28 C 0.024 3.976 29 H 0.072 0.928 30 H 0.054 0.946 31 H 0.084 0.916 32 H 0.091 0.909 33 H 0.110 0.890 34 H 0.098 0.902 35 H 0.207 0.793 36 H 0.252 0.748 37 H 0.152 0.848 38 H 0.177 0.823 39 H 0.172 0.828 40 H 0.165 0.835 41 H 0.137 0.863 42 H 0.083 0.917 43 H 0.090 0.910 44 H 0.083 0.917 45 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 16.663 -8.045 -17.197 25.261 hybrid contribution 0.311 0.957 1.463 1.776 sum 16.974 -7.088 -15.733 24.205 Atomic orbital electron populations 1.69974 1.07401 1.27340 1.55100 1.25851 0.95762 1.00765 1.00047 0.86016 0.78619 0.80336 0.78170 1.19058 1.23970 1.18996 1.18823 0.86964 0.93834 1.38525 0.92925 1.44574 1.08506 1.34664 1.46555 1.21422 0.97313 0.92027 0.89445 1.22034 0.96831 0.97819 0.98615 1.22739 0.94140 0.92998 0.85220 1.86855 1.24841 1.69092 1.44433 1.19865 0.80886 0.75932 0.85299 1.90874 1.67334 1.52831 1.28965 1.21022 0.97731 1.11787 0.87023 1.22675 0.93471 0.99532 1.00866 1.24430 0.98097 1.03165 0.90807 1.73323 1.00400 1.12677 1.24875 1.42984 1.11762 1.38605 1.07219 1.17733 0.82645 0.95281 1.04002 1.21151 0.94391 0.99029 0.97785 1.21380 0.94612 0.97227 0.99527 1.21700 1.00584 0.93231 0.96534 1.21283 0.92742 1.01456 0.97317 1.20967 0.97911 0.93245 0.98373 1.22279 1.00009 0.97957 0.97289 1.21030 0.91973 0.90811 0.93759 0.92812 0.94580 0.91624 0.90859 0.88992 0.90230 0.79311 0.74828 0.84781 0.82325 0.82838 0.83513 0.86265 0.91706 0.90993 0.91664 0.94426 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.48 13.97 21.65 0.30 -58.18 16 2 C -0.03 -1.65 5.21 84.86 0.44 -1.21 16 3 Si 0.94 44.80 24.37 68.60 1.67 46.47 16 4 H -0.26 -11.52 6.56 99.48 0.65 -10.87 16 5 H -0.31 -15.20 7.11 99.48 0.71 -14.49 16 6 H -0.27 -12.27 6.79 99.48 0.68 -11.59 16 7 C -0.25 -14.00 10.04 84.03 0.84 -13.15 16 8 H 0.05 3.21 8.06 -2.91 -0.02 3.19 16 9 N -0.62 -28.37 2.78 -698.37 -1.94 -30.31 16 10 C 0.12 4.93 4.21 86.36 0.36 5.29 16 11 C -0.11 -3.62 5.74 30.67 0.18 -3.45 16 12 C 0.10 3.23 2.42 30.62 0.07 3.30 16 13 O -0.34 -9.77 5.77 -57.37 -0.33 -10.10 16 14 C 0.54 15.73 7.45 70.09 0.52 16.25 16 15 O -0.51 -16.87 16.19 19.65 0.32 -16.55 16 16 C -0.05 -1.36 6.77 40.70 0.28 -1.09 16 17 C -0.14 -2.70 10.86 22.69 0.25 -2.45 16 18 C 0.01 0.17 12.03 85.17 1.02 1.20 16 19 N -0.28 -6.39 11.70 -57.12 -0.67 -7.06 16 20 N -0.22 -5.53 3.44 -176.14 -0.61 -6.14 16 21 C 0.09 2.23 5.74 38.14 0.22 2.44 16 22 C -0.10 -2.16 9.81 22.39 0.22 -1.94 16 23 C -0.11 -1.83 10.04 22.25 0.22 -1.60 16 24 C -0.10 -1.74 10.04 22.29 0.22 -1.52 16 25 C -0.11 -2.15 10.04 22.25 0.22 -1.92 16 26 C -0.08 -1.96 7.10 22.39 0.16 -1.80 16 27 C -0.14 -4.54 5.72 30.67 0.18 -4.37 16 28 C 0.15 5.77 6.53 86.31 0.56 6.33 16 29 H 0.26 15.31 8.31 -92.70 -0.77 14.54 16 30 H 0.04 1.40 7.18 -2.39 -0.02 1.38 16 31 H 0.07 2.86 4.49 -2.39 -0.01 2.85 16 32 H 0.07 2.44 8.14 -2.38 -0.02 2.42 16 33 H 0.09 2.38 8.14 -2.39 -0.02 2.36 16 34 H 0.08 2.58 7.16 -2.38 -0.02 2.56 16 35 H 0.19 2.88 8.06 -2.91 -0.02 2.85 16 36 H 0.24 1.68 8.06 -2.92 -0.02 1.66 16 37 H 0.13 2.57 8.06 -2.91 -0.02 2.55 16 38 H 0.16 1.74 8.06 -2.91 -0.02 1.71 16 39 H 0.15 1.87 8.06 -2.91 -0.02 1.85 16 40 H 0.15 2.43 8.06 -2.91 -0.02 2.40 16 41 H 0.12 2.85 6.85 -2.91 -0.02 2.83 16 42 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16 43 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 44 H 0.06 2.55 7.94 -2.39 -0.02 2.53 16 45 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 Total: -1.00 -70.61 367.48 5.64 -64.97 By element: Atomic # 1 Polarization: 15.64 SS G_CDS: 0.92 Total: 16.56 kcal Atomic # 6 Polarization: -5.64 SS G_CDS: 5.98 Total: 0.33 kcal Atomic # 7 Polarization: -98.78 SS G_CDS: -2.91 Total: -101.69 kcal Atomic # 8 Polarization: -26.63 SS G_CDS: -0.01 Total: -26.65 kcal Atomic # 14 Polarization: 44.80 SS G_CDS: 1.67 Total: 46.47 kcal Total: -70.61 5.64 -64.97 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000796771198.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.087 kcal (2) G-P(sol) polarization free energy of solvation -70.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.477 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.641 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.969 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.118 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds