Wall clock time and date at job start Sat Apr 11 2020 06:19:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86803 * 120.00015 * 2 1 4 4 H 1.48497 * 109.47317 * 269.99841 * 3 2 1 5 5 H 1.48499 * 109.47199 * 30.00253 * 3 2 1 6 6 H 1.48505 * 109.47031 * 150.00048 * 3 2 1 7 7 C 1.37872 * 120.00079 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00429 * 180.02562 * 7 2 1 9 9 C 1.50705 * 119.99765 * 0.02562 * 7 2 1 10 10 C 1.53005 * 109.46867 * 180.02562 * 9 7 2 11 11 C 1.52998 * 109.46592 * 179.97438 * 10 9 7 12 12 S 1.81411 * 109.47014 * 179.97438 * 11 10 9 13 13 O 1.42100 * 110.53868 * 68.37628 * 12 11 10 14 14 O 1.42099 * 110.54281 * 291.62753 * 12 11 10 15 15 N 1.65596 * 104.45109 * 180.02562 * 12 11 10 16 16 C 1.46496 * 120.00010 * 65.36973 * 15 12 11 17 17 H 1.08999 * 109.47088 * 352.54095 * 16 15 12 18 18 C 1.52999 * 109.46924 * 112.54237 * 16 15 12 19 19 C 1.53007 * 109.46961 * 294.51155 * 18 16 15 20 20 O 1.42899 * 109.47044 * 185.28009 * 19 18 16 21 21 C 1.53004 * 109.47311 * 232.53701 * 16 15 12 22 22 C 1.50699 * 109.46738 * 65.00390 * 21 16 15 23 23 C 1.38245 * 120.00151 * 269.72634 * 22 21 16 24 24 C 1.38224 * 120.00108 * 179.76852 * 23 22 21 25 25 C 1.38243 * 120.00160 * 0.50288 * 24 23 22 26 26 C 1.38232 * 119.99771 * 359.75080 * 25 24 23 27 27 C 1.38234 * 120.00241 * 89.99998 * 22 21 16 28 28 H 0.97004 * 120.00063 * 359.97438 * 1 2 3 29 29 H 1.08997 * 109.47662 * 59.99749 * 9 7 2 30 30 H 1.09005 * 109.46723 * 299.99253 * 9 7 2 31 31 H 1.09002 * 109.47560 * 59.99801 * 10 9 7 32 32 H 1.09000 * 109.47176 * 299.99031 * 10 9 7 33 33 H 1.08998 * 109.47537 * 60.00401 * 11 10 9 34 34 H 1.08996 * 109.47649 * 299.99275 * 11 10 9 35 35 H 0.96999 * 119.99624 * 245.37206 * 15 12 11 36 36 H 1.09001 * 109.47248 * 54.51208 * 18 16 15 37 37 H 1.09005 * 109.47087 * 174.51574 * 18 16 15 38 38 H 1.08992 * 109.47137 * 305.28165 * 19 18 16 39 39 H 1.09000 * 109.46928 * 65.28753 * 19 18 16 40 40 H 0.96698 * 114.00324 * 179.97438 * 20 19 18 41 41 H 1.09001 * 109.47177 * 185.00313 * 21 16 15 42 42 H 1.08995 * 109.47349 * 305.00437 * 21 16 15 43 43 H 1.07995 * 119.99367 * 359.97438 * 23 22 21 44 44 H 1.08006 * 120.00332 * 180.22939 * 24 23 22 45 45 H 1.07996 * 120.00268 * 179.72460 * 25 24 23 46 46 H 1.07995 * 120.00128 * 179.97438 * 26 25 24 47 47 H 1.07997 * 119.99920 * 359.97438 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0465 -1.4000 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2509 -2.4991 -0.0017 10 6 2.2452 -3.6621 -0.0015 11 6 1.4801 -4.9870 -0.0020 12 16 2.6589 -6.3659 -0.0025 13 8 3.3556 -6.4267 1.2346 14 8 3.3558 -6.4258 -1.2394 15 7 1.7086 -7.7220 -0.0037 16 6 0.8556 -8.0177 -1.1575 17 1 0.8775 -7.1766 -1.8505 18 6 1.3701 -9.2737 -1.8635 19 6 2.7529 -8.9953 -2.4564 20 8 3.1804 -10.1254 -3.2194 21 6 -0.5804 -8.2510 -0.6838 22 6 -1.1297 -6.9756 -0.0984 23 6 -0.9786 -6.7129 1.2504 24 6 -1.4782 -5.5408 1.7864 25 6 -2.1381 -4.6362 0.9757 26 6 -2.2937 -4.9013 -0.3720 27 6 -1.7895 -6.0710 -0.9090 28 1 -0.4850 0.8401 0.0004 29 1 0.6246 -2.5563 -0.8919 30 1 0.6240 -2.5574 0.8881 31 1 2.8713 -3.6048 0.8890 32 1 2.8725 -3.6040 -0.8910 33 1 0.8539 -5.0447 -0.8922 34 1 0.8532 -5.0450 0.8877 35 1 1.7166 -8.3206 0.7595 36 1 1.4404 -10.0910 -1.1457 37 1 0.6813 -9.5497 -2.6620 38 1 2.7014 -8.1191 -3.1026 39 1 3.4634 -8.8113 -1.6505 40 1 4.0512 -10.0188 -3.6261 41 1 -1.1965 -8.5578 -1.5290 42 1 -0.5900 -9.0330 0.0755 43 1 -0.4673 -7.4219 1.8846 44 1 -1.3569 -5.3338 2.8395 45 1 -2.5323 -3.7225 1.3954 46 1 -2.8096 -4.1948 -1.0052 47 1 -1.9111 -6.2781 -1.9620 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000799831050.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:14 Heat of formation + Delta-G solvation = -125.016468 kcal Electronic energy + Delta-G solvation = -29027.732241 eV Core-core repulsion = 25108.549976 eV Total energy + Delta-G solvation = -3919.182265 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.149 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -39.56237 -37.82261 -36.82164 -36.15807 -35.75061 -34.62611 -32.22621 -32.14629 -31.00109 -30.71629 -27.78337 -27.68396 -23.78093 -23.69009 -22.48439 -21.45575 -20.98080 -20.65237 -19.30635 -17.62443 -17.40728 -16.75503 -16.55274 -16.39256 -15.69065 -15.48572 -15.14083 -15.00986 -14.66443 -14.49545 -14.25885 -14.06641 -13.75935 -13.38221 -13.21176 -12.70703 -12.57361 -12.36846 -12.19323 -12.03124 -11.99563 -11.87595 -11.75150 -11.58461 -11.54186 -11.21295 -11.01124 -10.92799 -10.91591 -10.87597 -10.80826 -10.41959 -10.00073 -9.94416 -9.77933 -9.32149 -9.07123 -8.78203 -8.58162 -8.40079 -6.05645 -4.08008 0.48463 1.43974 1.50085 2.83092 3.29414 3.35757 3.39838 3.79341 3.93387 4.05229 4.39288 4.42245 4.61110 4.67809 4.80223 4.93557 5.03351 5.09773 5.15440 5.19405 5.23773 5.30228 5.32425 5.33469 5.41790 5.59525 5.59602 5.62051 5.70687 5.77547 5.93785 5.94782 6.06078 6.13785 6.14257 6.28614 6.49060 6.60053 6.63105 6.71953 6.88937 6.92215 7.11126 7.53126 7.59375 7.70092 7.93063 8.34032 8.97956 9.56380 11.05237 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.011356 B = 0.003914 C = 0.003255 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2465.094821 B = 7152.875884 C = 8600.135728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.060 3.940 3 Si 0.891 3.109 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.525 4.525 8 H 0.056 0.944 9 C 0.037 3.963 10 C -0.104 4.104 11 C -0.605 4.605 12 S 2.593 3.407 13 O -0.966 6.966 14 O -0.963 6.963 15 N -1.117 6.117 16 C 0.163 3.837 17 H 0.092 0.908 18 C -0.127 4.127 19 C 0.074 3.926 20 O -0.582 6.582 21 C -0.086 4.086 22 C -0.094 4.094 23 C -0.122 4.122 24 C -0.119 4.119 25 C -0.105 4.105 26 C -0.106 4.106 27 C -0.120 4.120 28 H 0.260 0.740 29 H 0.019 0.981 30 H 0.020 0.980 31 H 0.063 0.937 32 H 0.063 0.937 33 H 0.125 0.875 34 H 0.131 0.869 35 H 0.414 0.586 36 H 0.074 0.926 37 H 0.081 0.919 38 H 0.056 0.944 39 H 0.051 0.949 40 H 0.380 0.620 41 H 0.085 0.915 42 H 0.080 0.920 43 H 0.119 0.881 44 H 0.121 0.879 45 H 0.124 0.876 46 H 0.122 0.878 47 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.921 -19.162 -1.653 19.628 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.142 4.142 3 Si 0.719 3.281 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.564 4.564 8 H 0.075 0.925 9 C -0.001 4.001 10 C -0.143 4.143 11 C -0.737 4.737 12 S 2.690 3.310 13 O -0.956 6.956 14 O -0.953 6.953 15 N -0.874 5.874 16 C 0.055 3.945 17 H 0.110 0.890 18 C -0.166 4.166 19 C -0.004 4.004 20 O -0.388 6.388 21 C -0.125 4.125 22 C -0.094 4.094 23 C -0.140 4.140 24 C -0.137 4.137 25 C -0.123 4.123 26 C -0.124 4.124 27 C -0.139 4.139 28 H 0.070 0.930 29 H 0.038 0.962 30 H 0.039 0.961 31 H 0.081 0.919 32 H 0.082 0.918 33 H 0.143 0.857 34 H 0.150 0.850 35 H 0.248 0.752 36 H 0.093 0.907 37 H 0.099 0.901 38 H 0.074 0.926 39 H 0.069 0.931 40 H 0.226 0.774 41 H 0.104 0.896 42 H 0.099 0.901 43 H 0.137 0.863 44 H 0.139 0.861 45 H 0.142 0.858 46 H 0.140 0.860 47 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -3.690 -19.186 -1.615 19.604 hybrid contribution 0.232 1.344 0.227 1.383 sum -3.458 -17.841 -1.389 18.226 Atomic orbital electron populations 1.69954 1.05993 1.26601 1.50709 1.24980 0.94863 0.99183 0.95156 0.86605 0.79947 0.83382 0.78166 1.20620 1.21207 1.19792 1.21265 0.93199 0.90997 1.50906 0.92540 1.18990 0.93342 0.90138 0.97644 1.21480 0.99308 0.91892 1.01622 1.30614 1.16079 1.15443 1.11593 1.05476 0.75789 0.75469 0.74298 1.93573 1.70986 1.85930 1.45120 1.93559 1.70431 1.85784 1.45553 1.55795 1.62063 1.42386 1.27121 1.20705 0.89063 0.98255 0.86493 0.89032 1.21879 0.96518 0.97861 1.00366 1.22259 0.95598 0.87795 0.94741 1.86372 1.39939 1.41975 1.70505 1.20949 0.94607 0.95380 1.01578 1.19705 0.99395 0.96354 0.93919 1.21013 1.00623 0.97629 0.94700 1.21190 0.98121 0.94285 1.00090 1.21242 0.98094 0.98905 0.94036 1.21186 0.99195 0.96590 0.95460 1.21040 0.98888 0.94483 0.99440 0.93021 0.96237 0.96146 0.91879 0.91837 0.85690 0.85046 0.75176 0.90699 0.90053 0.92553 0.93091 0.77356 0.89607 0.90116 0.86346 0.86122 0.85838 0.85964 0.86228 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.90 13.29 55.43 0.74 -25.16 16 2 C 0.06 1.67 5.46 -17.82 -0.10 1.58 16 3 Si 0.89 21.41 29.54 -169.99 -5.02 16.39 16 4 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 5 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 6 H -0.27 -6.47 7.11 56.52 0.40 -6.06 16 7 C -0.53 -14.63 9.11 -34.44 -0.31 -14.94 16 8 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 9 C 0.04 0.93 4.97 -27.88 -0.14 0.79 16 10 C -0.10 -2.10 5.16 -26.73 -0.14 -2.24 16 11 C -0.61 -9.58 5.30 37.16 0.20 -9.39 16 12 S 2.59 37.87 5.31 -107.50 -0.57 37.30 16 13 O -0.97 -17.05 18.08 -57.54 -1.04 -18.09 16 14 O -0.96 -15.92 15.44 -57.54 -0.89 -16.81 16 15 N -1.12 -11.37 4.24 -4.89 -0.02 -11.39 16 16 C 0.16 1.46 2.12 -67.93 -0.14 1.31 16 17 H 0.09 0.87 7.56 -51.93 -0.39 0.48 16 18 C -0.13 -1.14 5.26 -26.73 -0.14 -1.28 16 19 C 0.07 0.83 5.77 37.16 0.21 1.04 16 20 O -0.58 -6.35 13.66 -35.23 -0.48 -6.83 16 21 C -0.09 -0.65 5.03 -27.88 -0.14 -0.79 16 22 C -0.09 -0.94 4.29 -104.62 -0.45 -1.39 16 23 C -0.12 -1.30 7.91 -39.58 -0.31 -1.61 16 24 C -0.12 -1.46 9.01 -39.58 -0.36 -1.81 16 25 C -0.10 -1.42 10.05 -39.58 -0.40 -1.82 16 26 C -0.11 -1.37 10.05 -39.58 -0.40 -1.77 16 27 C -0.12 -1.34 9.42 -39.58 -0.37 -1.71 16 28 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 29 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 31 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 32 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 33 H 0.12 1.83 7.54 -51.92 -0.39 1.44 16 34 H 0.13 2.00 5.65 -51.93 -0.29 1.71 16 35 H 0.41 3.37 8.92 -34.46 -0.31 3.07 16 36 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.06 0.67 7.90 -51.93 -0.41 0.26 16 39 H 0.05 0.63 7.05 -51.93 -0.37 0.26 16 40 H 0.38 2.69 9.12 45.56 0.42 3.11 16 41 H 0.09 0.54 8.09 -51.93 -0.42 0.12 16 42 H 0.08 0.51 8.08 -51.93 -0.42 0.09 16 43 H 0.12 1.04 8.06 -52.49 -0.42 0.62 16 44 H 0.12 1.33 8.06 -52.48 -0.42 0.91 16 45 H 0.12 1.69 8.06 -52.49 -0.42 1.26 16 46 H 0.12 1.51 8.06 -52.49 -0.42 1.09 16 47 H 0.12 1.09 8.06 -52.49 -0.42 0.67 16 LS Contribution 394.88 15.07 5.95 5.95 Total: -1.00 -34.97 394.88 -11.10 -46.07 By element: Atomic # 1 Polarization: 13.39 SS G_CDS: -6.78 Total: 6.62 kcal Atomic # 6 Polarization: -31.04 SS G_CDS: -2.99 Total: -34.03 kcal Atomic # 7 Polarization: -37.27 SS G_CDS: 0.72 Total: -36.56 kcal Atomic # 8 Polarization: -39.33 SS G_CDS: -2.41 Total: -41.74 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Atomic # 16 Polarization: 37.87 SS G_CDS: -0.57 Total: 37.30 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -34.97 -11.10 -46.07 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000799831050.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.949 kcal (2) G-P(sol) polarization free energy of solvation -34.966 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.915 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.067 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds