Wall clock time and date at job start Sat Apr 11 2020 06:19:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86801 * 119.99914 * 2 1 4 4 H 1.48504 * 109.47138 * 270.00199 * 3 2 1 5 5 H 1.48501 * 109.47143 * 30.00016 * 3 2 1 6 6 H 1.48498 * 109.47149 * 150.00556 * 3 2 1 7 7 C 1.38801 * 120.00400 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00254 * 179.97438 * 7 2 1 9 9 S 1.76207 * 119.99511 * 359.97438 * 7 2 1 10 10 C 1.81003 * 99.99727 * 180.02562 * 9 7 2 11 11 C 1.52998 * 109.47025 * 179.97438 * 10 9 7 12 12 C 1.52998 * 109.47237 * 179.97438 * 11 10 9 13 13 O 1.45199 * 109.47061 * 180.02562 * 12 11 10 14 14 C 1.34231 * 116.99678 * 179.97438 * 13 12 11 15 15 O 1.20834 * 120.00001 * 0.02562 * 14 13 12 16 16 C 1.50696 * 120.00067 * 179.97438 * 14 13 12 17 17 H 1.09005 * 109.52051 * 59.92050 * 16 14 13 18 18 C 1.53044 * 109.49925 * 299.84449 * 16 14 13 19 19 C 1.53035 * 109.53745 * 178.68342 * 18 16 14 20 20 C 1.52755 * 109.38924 * 61.23716 * 19 18 16 21 21 N 1.46927 * 109.00696 * 305.59167 * 20 19 18 22 22 C 1.34784 * 120.62699 * 233.58141 * 21 20 19 23 23 O 1.21283 * 119.99649 * 179.71637 * 22 21 20 24 24 C 1.50697 * 119.99774 * 359.44533 * 22 21 20 25 25 C 1.53006 * 117.49428 * 248.61931 * 24 22 21 26 26 C 1.53001 * 117.49691 * 179.97438 * 24 22 21 27 27 C 1.46923 * 118.74026 * 53.30483 * 21 20 19 28 28 H 0.96995 * 120.00256 * 359.97438 * 1 2 3 29 29 H 1.08998 * 109.47405 * 59.99663 * 10 9 7 30 30 H 1.09004 * 109.46959 * 299.99750 * 10 9 7 31 31 H 1.09007 * 109.46619 * 59.99681 * 11 10 9 32 32 H 1.08996 * 109.46834 * 299.99781 * 11 10 9 33 33 H 1.08998 * 109.47012 * 59.99904 * 12 11 10 34 34 H 1.09004 * 109.47140 * 300.00120 * 12 11 10 35 35 H 1.09005 * 109.45662 * 298.70209 * 18 16 14 36 36 H 1.08998 * 109.45901 * 58.66917 * 18 16 14 37 37 H 1.09008 * 109.49406 * 181.31392 * 19 18 16 38 38 H 1.09004 * 109.49907 * 301.37552 * 19 18 16 39 39 H 1.09000 * 109.51621 * 185.70445 * 20 19 18 40 40 H 1.09005 * 109.42927 * 65.42309 * 20 19 18 41 41 H 1.08996 * 115.55571 * 34.32938 * 24 22 21 42 42 H 1.08996 * 117.49757 * 0.02562 * 25 24 22 43 43 H 1.08998 * 117.49562 * 145.02542 * 25 24 22 44 44 H 1.08997 * 117.50357 * 214.97846 * 26 24 22 45 45 H 1.09005 * 117.49696 * 359.97438 * 26 24 22 46 46 H 1.08997 * 109.58570 * 66.43754 * 27 21 20 47 47 H 1.08999 * 109.58501 * 186.85914 * 27 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5478 1.4402 0.6999 7 6 2.0104 -1.2020 -0.0005 8 1 3.0904 -1.2020 -0.0010 9 16 1.1293 -2.7280 -0.0005 10 6 2.5159 -3.8914 -0.0005 11 6 1.9794 -5.3242 0.0001 12 6 3.1514 -6.3077 -0.0005 13 8 2.6422 -7.6675 -0.0005 14 6 3.5486 -8.6576 -0.0016 15 8 4.7284 -8.3966 -0.0020 16 6 3.0948 -10.0946 -0.0011 17 1 2.4931 -10.2868 -0.8894 18 6 2.2578 -10.3655 1.2512 19 6 1.7691 -11.8157 1.2363 20 6 2.9725 -12.7565 1.2457 21 7 3.8616 -12.4074 0.1293 22 6 4.2468 -13.3438 -0.7604 23 8 4.9768 -13.0419 -1.6807 24 6 3.7752 -14.7670 -0.6081 25 6 4.8190 -15.8205 -0.2317 26 6 4.2467 -15.7827 -1.6507 27 6 4.3178 -11.0170 -0.0024 28 1 -0.4850 0.8400 0.0004 29 1 3.1246 -3.7313 0.8894 30 1 3.1245 -3.7313 -0.8906 31 1 1.3705 -5.4845 -0.8897 32 1 1.3711 -5.4840 0.8903 33 1 3.7606 -6.1474 0.8890 34 1 3.7594 -6.1478 -0.8910 35 1 2.8675 -10.1969 2.1389 36 1 1.3999 -9.6934 1.2670 37 1 1.1538 -12.0013 2.1167 38 1 1.1794 -11.9916 0.3366 39 1 2.6312 -13.7855 1.1331 40 1 3.5097 -12.6487 2.1881 41 1 2.7694 -14.8886 -0.2064 42 1 5.8465 -15.4841 -0.0937 43 1 4.4998 -16.6354 0.4181 44 1 3.5513 -16.5728 -1.9341 45 1 4.8976 -15.4215 -2.4469 46 1 4.9670 -10.7645 0.8359 47 1 4.8637 -10.8987 -0.9384 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000805391788.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:18 Heat of formation + Delta-G solvation = -115.360203 kcal Electronic energy + Delta-G solvation = -26408.551546 eV Core-core repulsion = 22489.788008 eV Total energy + Delta-G solvation = -3918.763538 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.149 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.17428 -40.33888 -38.18329 -36.73323 -36.45939 -33.80683 -33.27210 -32.45729 -31.88557 -27.21583 -26.43277 -25.58927 -25.01891 -23.56188 -22.91474 -22.05555 -21.35978 -20.44678 -19.31897 -18.19832 -17.72866 -17.38289 -16.73262 -16.65122 -16.29118 -15.72555 -15.09877 -15.03131 -14.83141 -14.80669 -14.57762 -14.38396 -14.00999 -13.59311 -13.41181 -13.18446 -12.95773 -12.79347 -12.67122 -12.14821 -12.06899 -11.98056 -11.69417 -11.50458 -11.35645 -11.17991 -11.15844 -11.08140 -11.01269 -10.98313 -10.92197 -10.69827 -10.49664 -10.31722 -10.19469 -9.65129 -9.16052 -9.08959 -8.37697 -6.58169 -6.26191 -3.97387 2.01339 2.03398 2.22615 2.70421 3.20581 3.21290 3.27970 3.34809 3.52495 3.89196 4.09037 4.18754 4.25527 4.28312 4.30378 4.37011 4.44279 4.51274 4.66693 4.80546 4.90236 5.05255 5.07975 5.09031 5.10959 5.15789 5.18510 5.23229 5.31352 5.36176 5.37084 5.43959 5.46139 5.50532 5.63589 5.64375 5.73579 5.75115 5.86568 5.96815 6.13741 6.40214 6.42480 6.64698 6.89330 7.57793 7.60978 7.73557 8.33501 9.20306 10.81979 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.036647 B = 0.001526 C = 0.001496 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 763.871368 B =18342.993618 C =18707.794035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.869 5.869 2 C 0.072 3.928 3 Si 0.919 3.081 4 H -0.276 1.276 5 H -0.282 1.282 6 H -0.272 1.272 7 C -0.519 4.519 8 H 0.074 0.926 9 S -0.124 6.124 10 C -0.115 4.115 11 C -0.097 4.097 12 C 0.072 3.928 13 O -0.352 6.352 14 C 0.468 3.532 15 O -0.507 6.507 16 C -0.095 4.095 17 H 0.113 0.887 18 C -0.114 4.114 19 C -0.135 4.135 20 C 0.103 3.897 21 N -0.609 5.609 22 C 0.546 3.454 23 O -0.536 6.536 24 C -0.197 4.197 25 C -0.151 4.151 26 C -0.148 4.148 27 C 0.128 3.872 28 H 0.268 0.732 29 H 0.064 0.936 30 H 0.064 0.936 31 H 0.078 0.922 32 H 0.078 0.922 33 H 0.071 0.929 34 H 0.071 0.929 35 H 0.073 0.927 36 H 0.087 0.913 37 H 0.086 0.914 38 H 0.073 0.927 39 H 0.091 0.909 40 H 0.074 0.926 41 H 0.127 0.873 42 H 0.100 0.900 43 H 0.105 0.895 44 H 0.104 0.896 45 H 0.108 0.892 46 H 0.081 0.919 47 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.179 -33.445 3.513 33.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.505 5.505 2 C -0.137 4.137 3 Si 0.746 3.254 4 H -0.202 1.202 5 H -0.207 1.207 6 H -0.197 1.197 7 C -0.667 4.667 8 H 0.092 0.908 9 S 0.105 5.895 10 C -0.263 4.263 11 C -0.136 4.136 12 C -0.003 4.003 13 O -0.268 6.268 14 C 0.310 3.690 15 O -0.395 6.395 16 C -0.115 4.115 17 H 0.131 0.869 18 C -0.152 4.152 19 C -0.173 4.173 20 C -0.020 4.020 21 N -0.342 5.342 22 C 0.334 3.666 23 O -0.413 6.413 24 C -0.218 4.218 25 C -0.189 4.189 26 C -0.185 4.185 27 C 0.005 3.995 28 H 0.078 0.922 29 H 0.083 0.917 30 H 0.083 0.917 31 H 0.096 0.904 32 H 0.097 0.903 33 H 0.089 0.911 34 H 0.089 0.911 35 H 0.092 0.908 36 H 0.106 0.894 37 H 0.105 0.895 38 H 0.091 0.909 39 H 0.109 0.891 40 H 0.092 0.908 41 H 0.144 0.856 42 H 0.118 0.882 43 H 0.123 0.877 44 H 0.122 0.878 45 H 0.127 0.873 46 H 0.099 0.901 47 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 3.641 -33.222 3.026 33.558 hybrid contribution 1.815 1.568 0.085 2.400 sum 5.456 -31.654 3.110 32.271 Atomic orbital electron populations 1.70013 1.05931 1.27426 1.47111 1.25012 0.95091 0.99116 0.94486 0.86149 0.79441 0.81428 0.78414 1.20227 1.20712 1.19662 1.22703 0.94604 0.90679 1.58736 0.90834 1.84642 1.08774 0.99242 1.96888 1.23184 1.03457 0.96345 1.03360 1.21281 0.96416 0.91574 1.04294 1.23302 0.97812 0.76517 1.02667 1.86467 1.40182 1.16929 1.83241 1.23322 0.84664 0.88428 0.72574 1.90693 1.18573 1.85039 1.45160 1.21388 0.99448 0.87978 1.02692 0.86891 1.21548 1.00266 0.97514 0.95833 1.21880 0.97468 0.94246 1.03704 1.21804 0.90880 0.99805 0.89511 1.47985 1.49511 1.08751 1.27932 1.19711 0.79869 0.86082 0.80926 1.90720 1.36852 1.81533 1.32190 1.22223 1.01101 0.89328 1.09131 1.22956 0.97943 0.98907 0.99061 1.22988 1.03249 0.99216 0.93039 1.21392 0.94106 0.78722 1.05240 0.92239 0.91730 0.91721 0.90352 0.90348 0.91095 0.91095 0.90838 0.89428 0.89536 0.90857 0.89075 0.90800 0.85572 0.88202 0.87653 0.87775 0.87346 0.90067 0.87948 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.78 13.22 55.49 0.73 -25.05 16 2 C 0.07 2.04 5.49 -17.43 -0.10 1.94 16 3 Si 0.92 21.47 29.55 -169.99 -5.02 16.45 16 4 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 5 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 6 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 7 C -0.52 -14.81 9.50 30.94 0.29 -14.52 16 8 H 0.07 2.03 7.80 -52.49 -0.41 1.62 16 9 S -0.12 -3.19 21.44 -107.50 -2.30 -5.50 16 10 C -0.11 -2.28 5.67 37.16 0.21 -2.07 16 11 C -0.10 -1.56 5.60 -26.73 -0.15 -1.71 16 12 C 0.07 1.03 5.47 37.16 0.20 1.23 16 13 O -0.35 -4.67 10.11 -39.26 -0.40 -5.07 16 14 C 0.47 5.82 7.26 36.00 0.26 6.08 16 15 O -0.51 -7.71 15.67 -18.76 -0.29 -8.00 16 16 C -0.09 -0.84 2.78 -91.65 -0.25 -1.10 16 17 H 0.11 0.95 8.14 -51.93 -0.42 0.53 16 18 C -0.11 -0.74 5.11 -26.69 -0.14 -0.88 16 19 C -0.13 -0.57 6.06 -26.84 -0.16 -0.73 16 20 C 0.10 0.45 6.32 -3.93 -0.02 0.42 16 21 N -0.61 -4.74 2.98 -173.03 -0.52 -5.25 16 22 C 0.55 5.13 7.48 -10.98 -0.08 5.05 16 23 O -0.54 -7.28 15.67 5.56 0.09 -7.20 16 24 C -0.20 -1.15 5.14 -91.77 -0.47 -1.63 16 25 C -0.15 -0.72 10.24 -26.70 -0.27 -1.00 16 26 C -0.15 -0.84 10.05 -26.70 -0.27 -1.10 16 27 C 0.13 1.22 5.07 -3.71 -0.02 1.20 16 28 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 29 H 0.06 1.26 8.14 -51.92 -0.42 0.84 16 30 H 0.06 1.27 8.14 -51.91 -0.42 0.85 16 31 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 32 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 33 H 0.07 1.00 8.13 -51.93 -0.42 0.57 16 34 H 0.07 1.02 8.13 -51.93 -0.42 0.60 16 35 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 36 H 0.09 0.60 8.09 -51.93 -0.42 0.18 16 37 H 0.09 0.23 8.14 -51.92 -0.42 -0.19 16 38 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 39 H 0.09 0.22 5.50 -51.93 -0.29 -0.06 16 40 H 0.07 0.28 8.14 -51.93 -0.42 -0.15 16 41 H 0.13 0.44 6.54 -51.93 -0.34 0.10 16 42 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 43 H 0.11 0.28 8.14 -51.93 -0.42 -0.14 16 44 H 0.10 0.39 8.14 -51.93 -0.42 -0.04 16 45 H 0.11 0.82 7.67 -51.93 -0.40 0.42 16 46 H 0.08 0.78 7.95 -51.93 -0.41 0.37 16 47 H 0.10 1.22 7.00 -51.93 -0.36 0.86 16 LS Contribution 400.03 15.07 6.03 6.03 Total: -1.00 -34.68 400.03 -10.34 -45.02 By element: Atomic # 1 Polarization: 5.06 SS G_CDS: -7.68 Total: -2.62 kcal Atomic # 6 Polarization: -7.84 SS G_CDS: -0.97 Total: -8.80 kcal Atomic # 7 Polarization: -30.52 SS G_CDS: 0.22 Total: -30.31 kcal Atomic # 8 Polarization: -19.66 SS G_CDS: -0.60 Total: -20.27 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Atomic # 16 Polarization: -3.19 SS G_CDS: -2.30 Total: -5.50 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -34.68 -10.34 -45.02 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805391788.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.341 kcal (2) G-P(sol) polarization free energy of solvation -34.683 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.020 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.360 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds