Wall clock time and date at job start Sat Apr 11 2020 06:19:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86801 * 119.99914 * 2 1 4 4 H 1.48504 * 109.47138 * 270.00199 * 3 2 1 5 5 H 1.48501 * 109.47143 * 30.00016 * 3 2 1 6 6 H 1.48498 * 109.47149 * 150.00556 * 3 2 1 7 7 C 1.38801 * 120.00400 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00254 * 179.97438 * 7 2 1 9 9 S 1.76207 * 119.99511 * 359.97438 * 7 2 1 10 10 C 1.81003 * 99.99727 * 180.02562 * 9 7 2 11 11 C 1.52998 * 109.47025 * 179.97438 * 10 9 7 12 12 C 1.52998 * 109.47237 * 179.97438 * 11 10 9 13 13 O 1.45199 * 109.47061 * 180.02562 * 12 11 10 14 14 C 1.34231 * 116.99678 * 179.97438 * 13 12 11 15 15 O 1.20834 * 120.00001 * 0.02562 * 14 13 12 16 16 C 1.50696 * 120.00067 * 179.97438 * 14 13 12 17 17 H 1.09005 * 109.52051 * 59.92050 * 16 14 13 18 18 C 1.53044 * 109.49925 * 299.84449 * 16 14 13 19 19 C 1.53035 * 109.53745 * 178.68342 * 18 16 14 20 20 C 1.52755 * 109.38924 * 61.23716 * 19 18 16 21 21 N 1.46927 * 109.00696 * 305.59167 * 20 19 18 22 22 C 1.34784 * 120.62699 * 233.58141 * 21 20 19 23 23 O 1.21283 * 119.99649 * 179.71637 * 22 21 20 24 24 C 1.50697 * 119.99774 * 359.44533 * 22 21 20 25 25 C 1.53006 * 117.49428 * 248.61931 * 24 22 21 26 26 C 1.53001 * 117.49691 * 179.97438 * 24 22 21 27 27 C 1.46923 * 118.74026 * 53.30483 * 21 20 19 28 28 H 0.96995 * 120.00256 * 359.97438 * 1 2 3 29 29 H 1.08998 * 109.47405 * 59.99663 * 10 9 7 30 30 H 1.09004 * 109.46959 * 299.99750 * 10 9 7 31 31 H 1.09007 * 109.46619 * 59.99681 * 11 10 9 32 32 H 1.08996 * 109.46834 * 299.99781 * 11 10 9 33 33 H 1.08998 * 109.47012 * 59.99904 * 12 11 10 34 34 H 1.09004 * 109.47140 * 300.00120 * 12 11 10 35 35 H 1.09005 * 109.45662 * 298.70209 * 18 16 14 36 36 H 1.08998 * 109.45901 * 58.66917 * 18 16 14 37 37 H 1.09008 * 109.49406 * 181.31392 * 19 18 16 38 38 H 1.09004 * 109.49907 * 301.37552 * 19 18 16 39 39 H 1.09000 * 109.51621 * 185.70445 * 20 19 18 40 40 H 1.09005 * 109.42927 * 65.42309 * 20 19 18 41 41 H 1.08996 * 115.55571 * 34.32938 * 24 22 21 42 42 H 1.08996 * 117.49757 * 0.02562 * 25 24 22 43 43 H 1.08998 * 117.49562 * 145.02542 * 25 24 22 44 44 H 1.08997 * 117.50357 * 214.97846 * 26 24 22 45 45 H 1.09005 * 117.49696 * 359.97438 * 26 24 22 46 46 H 1.08997 * 109.58570 * 66.43754 * 27 21 20 47 47 H 1.08999 * 109.58501 * 186.85914 * 27 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5478 1.4402 0.6999 7 6 2.0104 -1.2020 -0.0005 8 1 3.0904 -1.2020 -0.0010 9 16 1.1293 -2.7280 -0.0005 10 6 2.5159 -3.8914 -0.0005 11 6 1.9794 -5.3242 0.0001 12 6 3.1514 -6.3077 -0.0005 13 8 2.6422 -7.6675 -0.0005 14 6 3.5486 -8.6576 -0.0016 15 8 4.7284 -8.3966 -0.0020 16 6 3.0948 -10.0946 -0.0011 17 1 2.4931 -10.2868 -0.8894 18 6 2.2578 -10.3655 1.2512 19 6 1.7691 -11.8157 1.2363 20 6 2.9725 -12.7565 1.2457 21 7 3.8616 -12.4074 0.1293 22 6 4.2468 -13.3438 -0.7604 23 8 4.9768 -13.0419 -1.6807 24 6 3.7752 -14.7670 -0.6081 25 6 4.8190 -15.8205 -0.2317 26 6 4.2467 -15.7827 -1.6507 27 6 4.3178 -11.0170 -0.0024 28 1 -0.4850 0.8400 0.0004 29 1 3.1246 -3.7313 0.8894 30 1 3.1245 -3.7313 -0.8906 31 1 1.3705 -5.4845 -0.8897 32 1 1.3711 -5.4840 0.8903 33 1 3.7606 -6.1474 0.8890 34 1 3.7594 -6.1478 -0.8910 35 1 2.8675 -10.1969 2.1389 36 1 1.3999 -9.6934 1.2670 37 1 1.1538 -12.0013 2.1167 38 1 1.1794 -11.9916 0.3366 39 1 2.6312 -13.7855 1.1331 40 1 3.5097 -12.6487 2.1881 41 1 2.7694 -14.8886 -0.2064 42 1 5.8465 -15.4841 -0.0937 43 1 4.4998 -16.6354 0.4181 44 1 3.5513 -16.5728 -1.9341 45 1 4.8976 -15.4215 -2.4469 46 1 4.9670 -10.7645 0.8359 47 1 4.8637 -10.8987 -0.9384 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000805391788.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:17 Heat of formation + Delta-G solvation = -134.889168 kcal Electronic energy + Delta-G solvation = -26409.398386 eV Core-core repulsion = 22489.788008 eV Total energy + Delta-G solvation = -3919.610378 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.149 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.03385 -41.17769 -38.86159 -37.81162 -37.01898 -35.00595 -34.60741 -34.13706 -32.46098 -28.44379 -27.69720 -27.10999 -25.79588 -24.19473 -23.30022 -22.87517 -22.58443 -21.28805 -19.91234 -19.58327 -18.87118 -18.53195 -17.81804 -17.58514 -16.95782 -16.91040 -16.48983 -16.20266 -15.97514 -15.60835 -15.47619 -15.11892 -14.99640 -14.79042 -14.34160 -14.07098 -13.97144 -13.84510 -13.72915 -13.46835 -13.17754 -12.96236 -12.69521 -12.64763 -12.45579 -12.42555 -12.40543 -12.23582 -12.01384 -11.75681 -11.63810 -11.55427 -11.51293 -11.40806 -11.32985 -11.16255 -10.89040 -10.38207 -9.81037 -8.69365 -8.39473 -6.16051 1.01862 1.18867 1.33303 1.38675 1.42610 1.49326 1.72006 2.01514 2.25799 2.90718 2.95193 3.24316 3.30780 3.45763 3.62048 3.68649 3.81722 3.81973 3.94217 3.95441 3.97179 4.04250 4.10243 4.12317 4.18540 4.29385 4.46531 4.48924 4.58301 4.65564 4.66864 4.70030 4.75961 4.83346 4.92794 4.99066 5.04106 5.05310 5.08001 5.13600 5.23486 5.32620 5.33619 5.38597 5.42887 6.16341 6.29465 6.56380 7.03168 7.05913 8.69862 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.036647 B = 0.001526 C = 0.001496 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 763.871368 B =18342.993618 C =18707.794035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.018 3.982 3 Si 0.993 3.007 4 H -0.268 1.268 5 H -0.273 1.273 6 H -0.264 1.264 7 C -0.543 4.543 8 H 0.073 0.927 9 S -0.181 6.181 10 C -0.093 4.093 11 C -0.084 4.084 12 C 0.079 3.921 13 O -0.351 6.351 14 C 0.469 3.531 15 O -0.538 6.538 16 C -0.085 4.085 17 H 0.120 0.880 18 C -0.112 4.112 19 C -0.127 4.127 20 C 0.096 3.904 21 N -0.604 5.604 22 C 0.534 3.466 23 O -0.592 6.592 24 C -0.196 4.196 25 C -0.139 4.139 26 C -0.157 4.157 27 C 0.131 3.869 28 H 0.272 0.728 29 H 0.068 0.932 30 H 0.066 0.934 31 H 0.078 0.922 32 H 0.083 0.917 33 H 0.075 0.925 34 H 0.069 0.931 35 H 0.075 0.925 36 H 0.087 0.913 37 H 0.113 0.887 38 H 0.075 0.925 39 H 0.119 0.881 40 H 0.085 0.915 41 H 0.161 0.839 42 H 0.082 0.918 43 H 0.137 0.863 44 H 0.129 0.871 45 H 0.079 0.921 46 H 0.077 0.923 47 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.555 -35.222 4.966 35.747 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.187 4.187 3 Si 0.815 3.185 4 H -0.194 1.194 5 H -0.198 1.198 6 H -0.188 1.188 7 C -0.691 4.691 8 H 0.091 0.909 9 S 0.047 5.953 10 C -0.242 4.242 11 C -0.123 4.123 12 C 0.004 3.996 13 O -0.267 6.267 14 C 0.312 3.688 15 O -0.428 6.428 16 C -0.105 4.105 17 H 0.138 0.862 18 C -0.150 4.150 19 C -0.165 4.165 20 C -0.024 4.024 21 N -0.336 5.336 22 C 0.325 3.675 23 O -0.473 6.473 24 C -0.217 4.217 25 C -0.176 4.176 26 C -0.195 4.195 27 C 0.008 3.992 28 H 0.081 0.919 29 H 0.087 0.913 30 H 0.084 0.916 31 H 0.097 0.903 32 H 0.101 0.899 33 H 0.094 0.906 34 H 0.088 0.912 35 H 0.094 0.906 36 H 0.106 0.894 37 H 0.131 0.869 38 H 0.093 0.907 39 H 0.137 0.863 40 H 0.103 0.897 41 H 0.178 0.822 42 H 0.101 0.899 43 H 0.155 0.845 44 H 0.147 0.853 45 H 0.097 0.903 46 H 0.095 0.905 47 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 2.985 -35.019 4.511 35.435 hybrid contribution 2.046 2.041 -0.368 2.914 sum 5.031 -32.978 4.143 33.616 Atomic orbital electron populations 1.70134 1.07612 1.28646 1.47785 1.26033 0.96024 1.03009 0.93652 0.85029 0.78186 0.76459 0.78818 1.19355 1.19765 1.18834 1.23066 0.94844 0.92039 1.59147 0.90875 1.84593 1.12928 1.00705 1.97063 1.23079 1.00866 0.96667 1.03600 1.21095 0.96934 0.89681 1.04578 1.23053 0.96718 0.76967 1.02901 1.86462 1.40325 1.16557 1.83326 1.24051 0.84130 0.89342 0.71251 1.90683 1.19894 1.85503 1.46675 1.21434 0.99420 0.85114 1.04527 0.86240 1.21609 0.99691 0.99493 0.94201 1.21884 0.97476 0.92070 1.05099 1.22144 0.90388 1.01412 0.88489 1.48107 1.49439 1.07531 1.28476 1.20475 0.79098 0.87707 0.80216 1.90694 1.39434 1.82604 1.34558 1.22315 1.02815 0.86812 1.09726 1.23047 0.96894 0.98916 0.98731 1.23034 1.03700 0.99897 0.92843 1.21166 0.94265 0.80389 1.03395 0.91860 0.91300 0.91555 0.90314 0.89875 0.90645 0.91213 0.90635 0.89410 0.86856 0.90653 0.86286 0.89685 0.82190 0.89901 0.84491 0.85299 0.90262 0.90469 0.91189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -54.21 13.22 21.65 0.29 -53.92 16 2 C 0.02 1.02 5.49 84.86 0.47 1.49 16 3 Si 0.99 43.83 29.55 68.60 2.03 45.86 16 4 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 5 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 6 H -0.26 -11.21 7.11 99.48 0.71 -10.50 16 7 C -0.54 -31.27 9.50 67.95 0.65 -30.62 16 8 H 0.07 4.06 7.80 -2.91 -0.02 4.04 16 9 S -0.18 -9.52 21.44 -56.49 -1.21 -10.73 16 10 C -0.09 -3.68 5.67 71.98 0.41 -3.27 16 11 C -0.08 -2.65 5.60 30.59 0.17 -2.48 16 12 C 0.08 2.20 5.47 71.98 0.39 2.59 16 13 O -0.35 -9.02 10.11 -51.43 -0.52 -9.54 16 14 C 0.47 11.58 7.26 71.23 0.52 12.09 16 15 O -0.54 -16.68 15.67 21.94 0.34 -16.34 16 16 C -0.08 -1.46 2.78 -11.46 -0.03 -1.49 16 17 H 0.12 1.93 8.14 -2.38 -0.02 1.91 16 18 C -0.11 -1.22 5.11 30.62 0.16 -1.07 16 19 C -0.13 -0.63 6.06 30.52 0.19 -0.44 16 20 C 0.10 0.53 6.32 86.22 0.54 1.07 16 21 N -0.60 -8.82 2.98 -819.74 -2.44 -11.26 16 22 C 0.53 9.96 7.48 87.65 0.66 10.62 16 23 O -0.59 -17.19 15.67 -3.04 -0.05 -17.24 16 24 C -0.20 -1.89 5.14 -11.54 -0.06 -1.95 16 25 C -0.14 -1.04 10.24 30.61 0.31 -0.73 16 26 C -0.16 -1.60 10.05 30.61 0.31 -1.30 16 27 C 0.13 2.57 5.07 86.36 0.44 3.01 16 28 H 0.27 15.11 8.31 -92.71 -0.77 14.34 16 29 H 0.07 2.65 8.14 -2.40 -0.02 2.63 16 30 H 0.07 2.59 8.14 -2.39 -0.02 2.57 16 31 H 0.08 2.48 8.14 -2.38 -0.02 2.46 16 32 H 0.08 2.55 8.14 -2.39 -0.02 2.53 16 33 H 0.08 2.05 8.13 -2.39 -0.02 2.03 16 34 H 0.07 1.97 8.13 -2.39 -0.02 1.95 16 35 H 0.07 0.81 8.14 -2.38 -0.02 0.80 16 36 H 0.09 1.00 8.09 -2.39 -0.02 0.98 16 37 H 0.11 0.06 8.14 -2.38 -0.02 0.04 16 38 H 0.07 0.40 8.14 -2.39 -0.02 0.38 16 39 H 0.12 0.03 5.50 -2.39 -0.01 0.02 16 40 H 0.08 0.34 8.14 -2.38 -0.02 0.32 16 41 H 0.16 0.41 6.54 -2.39 -0.02 0.39 16 42 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 43 H 0.14 0.19 8.14 -2.39 -0.02 0.17 16 44 H 0.13 0.64 8.14 -2.39 -0.02 0.62 16 45 H 0.08 1.29 7.67 -2.38 -0.02 1.27 16 46 H 0.08 1.54 7.95 -2.39 -0.02 1.52 16 47 H 0.07 1.83 7.00 -2.39 -0.02 1.81 16 Total: -1.00 -78.51 400.03 4.50 -74.01 By element: Atomic # 1 Polarization: 10.68 SS G_CDS: 0.95 Total: 11.64 kcal Atomic # 6 Polarization: -17.58 SS G_CDS: 5.11 Total: -12.47 kcal Atomic # 7 Polarization: -63.03 SS G_CDS: -2.16 Total: -65.18 kcal Atomic # 8 Polarization: -42.89 SS G_CDS: -0.22 Total: -43.12 kcal Atomic # 14 Polarization: 43.83 SS G_CDS: 2.03 Total: 45.86 kcal Atomic # 16 Polarization: -9.52 SS G_CDS: -1.21 Total: -10.73 kcal Total: -78.51 4.50 -74.01 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805391788.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.879 kcal (2) G-P(sol) polarization free energy of solvation -78.512 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.391 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.502 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.010 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds