Wall clock time and date at job start Sat Apr 11 2020 06:17:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31549 * 1 3 3 Si 1.86803 * 120.00199 * 2 1 4 4 H 1.48498 * 109.47027 * 270.00076 * 3 2 1 5 5 H 1.48501 * 109.46599 * 30.00144 * 3 2 1 6 6 H 1.48496 * 109.47444 * 149.99746 * 3 2 1 7 7 C 1.38659 * 120.00001 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99714 * 180.02562 * 7 2 1 9 9 O 1.34824 * 119.99997 * 359.97438 * 7 2 1 10 10 C 1.35759 * 116.99857 * 185.05901 * 9 7 2 11 11 C 1.38877 * 120.06748 * 354.46541 * 10 9 7 12 12 C 1.38102 * 119.92542 * 180.02562 * 11 10 9 13 13 C 1.38299 * 120.07024 * 0.02562 * 12 11 10 14 14 C 1.50706 * 119.92872 * 179.97438 * 13 12 11 15 15 N 1.46499 * 109.47249 * 90.00007 * 14 13 12 16 16 C 1.34751 * 120.03697 * 269.72711 * 15 14 13 17 17 N 1.30774 * 121.75158 * 179.54922 * 16 15 14 18 18 C 1.33583 * 120.97427 * 0.62104 * 17 16 15 19 19 C 1.35148 * 120.04863 * 359.85335 * 18 17 16 20 20 C 1.35244 * 120.03930 * 89.99866 * 15 14 13 21 21 O 1.21981 * 121.01159 * 0.05022 * 20 15 14 22 22 C 1.51240 * 120.26672 * 179.64894 * 19 18 17 23 23 C 1.53293 * 108.26675 * 69.97114 * 22 19 18 24 24 N 1.45436 * 110.71202 * 275.47901 * 23 22 19 25 25 C 1.45420 * 116.57827 * 69.19265 * 24 23 22 26 26 C 1.51423 * 120.09289 * 179.90081 * 18 17 16 27 27 C 1.38302 * 120.14044 * 0.25438 * 13 12 11 28 28 C 1.38100 * 120.06560 * 359.44849 * 27 13 12 29 29 H 0.97001 * 120.00400 * 0.02562 * 1 2 3 30 30 H 1.07995 * 120.03479 * 359.97438 * 11 10 9 31 31 H 1.08002 * 119.96259 * 180.02562 * 12 11 10 32 32 H 1.09001 * 109.46749 * 330.00032 * 14 13 12 33 33 H 1.09001 * 109.46686 * 210.00221 * 14 13 12 34 34 H 1.07994 * 119.12281 * 359.88009 * 16 15 14 35 35 H 1.09007 * 109.70676 * 189.65704 * 22 19 18 36 36 H 1.09000 * 109.70867 * 310.23297 * 22 19 18 37 37 H 1.09000 * 109.23207 * 35.79459 * 23 22 19 38 38 H 1.08996 * 109.23383 * 155.20367 * 23 22 19 39 39 H 1.00893 * 110.99970 * 197.60845 * 24 23 22 40 40 H 1.09002 * 109.19596 * 50.92608 * 25 24 23 41 41 H 1.09005 * 109.20186 * 170.21246 * 25 24 23 42 42 H 1.09002 * 109.69900 * 350.86490 * 26 18 17 43 43 H 1.09004 * 109.73185 * 230.28312 * 26 18 17 44 44 H 1.07997 * 119.96705 * 179.70419 * 27 13 12 45 45 H 1.08002 * 120.03051 * 180.27151 * 28 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 2.4970 2.0464 -1.4001 5 1 1.4469 2.6526 0.7001 6 1 3.5471 1.4402 0.7001 7 6 2.0088 -1.2008 -0.0005 8 1 3.0888 -1.2008 -0.0001 9 8 1.3347 -2.3684 -0.0005 10 6 2.0700 -3.5047 0.1056 11 6 3.4572 -3.4395 0.0922 12 6 4.2024 -4.5972 0.1998 13 6 3.5687 -5.8205 0.3203 14 6 4.3850 -7.0820 0.4369 15 7 4.6567 -7.3590 1.8496 16 6 5.7651 -6.8626 2.4333 17 7 6.0361 -7.0816 3.6938 18 6 5.2237 -7.8219 4.4530 19 6 4.1009 -8.3551 3.9225 20 6 3.7981 -8.1178 2.5680 21 8 2.7918 -8.5820 2.0582 22 6 3.1818 -9.2005 4.7755 23 6 2.4926 -8.2842 5.7930 24 7 3.3351 -8.0883 6.9622 25 6 4.5437 -7.3029 6.7690 26 6 5.5580 -8.0646 5.9098 27 6 2.1874 -5.8893 0.3282 28 6 1.4366 -4.7346 0.2271 29 1 -0.4851 0.8400 -0.0004 30 1 3.9526 -2.4846 -0.0032 31 1 5.2812 -4.5471 0.1898 32 1 5.3273 -6.9555 -0.0963 33 1 3.8310 -7.9146 0.0034 34 1 6.4451 -6.2635 1.8459 35 1 2.4321 -9.6791 4.1452 36 1 3.7617 -9.9609 5.2985 37 1 2.2926 -7.3185 5.3288 38 1 1.5500 -8.7358 6.1022 39 1 2.7973 -7.7388 7.7410 40 1 4.2870 -6.3659 6.2746 41 1 4.9885 -7.0847 7.7400 42 1 6.5641 -7.7024 6.1212 43 1 5.4978 -9.1308 6.1285 44 1 1.6954 -6.8465 0.4176 45 1 0.3580 -4.7885 0.2377 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000830507068.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:46 Heat of formation + Delta-G solvation = 7.437998 kcal Electronic energy + Delta-G solvation = -29291.930326 eV Core-core repulsion = 25275.340517 eV Total energy + Delta-G solvation = -4016.589809 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.97784 -39.23402 -38.37234 -37.50054 -36.80325 -34.90766 -32.47295 -32.45919 -31.70580 -30.37851 -30.14266 -27.57721 -26.32311 -25.51691 -24.59805 -23.45796 -22.05504 -21.60582 -20.96110 -20.59672 -18.74987 -18.08513 -17.36058 -17.09385 -16.50385 -16.30205 -16.01789 -15.15473 -14.93963 -14.78351 -14.65991 -14.53958 -14.38001 -13.77759 -13.72082 -13.57792 -13.32262 -12.88365 -12.82802 -12.78621 -12.53086 -12.25548 -12.13753 -11.73272 -11.66679 -11.46585 -11.38833 -11.30654 -11.21100 -10.97510 -10.74269 -10.52386 -10.05216 -10.02055 -9.92648 -9.46848 -8.95365 -8.62896 -8.32568 -8.25926 -7.38490 -6.56705 -4.15821 0.61416 1.86686 1.90635 2.10045 2.71350 3.05604 3.06672 3.11418 3.56786 3.86815 3.88827 3.91620 4.32679 4.40143 4.54944 4.71400 4.93022 4.94898 4.97414 5.06763 5.09059 5.14696 5.15701 5.20261 5.29590 5.41445 5.48661 5.50774 5.58852 5.70158 5.74811 5.76815 5.88889 6.00617 6.08150 6.14189 6.26597 6.35746 6.56997 6.58974 6.75454 6.91048 6.98766 7.11324 7.16748 7.18806 7.30127 7.66997 7.75835 7.87534 7.91000 8.88142 9.56129 10.60688 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.013441 B = 0.002780 C = 0.002644 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2082.656811 B =10068.644725 C =10588.432226 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.858 5.858 2 C 0.041 3.959 3 Si 0.943 3.057 4 H -0.272 1.272 5 H -0.276 1.276 6 H -0.267 1.267 7 C -0.395 4.395 8 H 0.094 0.906 9 O -0.172 6.172 10 C 0.163 3.837 11 C -0.238 4.238 12 C -0.053 4.053 13 C -0.225 4.225 14 C 0.147 3.853 15 N -0.512 5.512 16 C 0.374 3.626 17 N -0.541 5.541 18 C 0.170 3.830 19 C -0.260 4.260 20 C 0.526 3.474 21 O -0.532 6.532 22 C -0.052 4.052 23 C 0.078 3.922 24 N -0.715 5.715 25 C 0.080 3.920 26 C -0.069 4.069 27 C -0.043 4.043 28 C -0.196 4.196 29 H 0.272 0.728 30 H 0.129 0.871 31 H 0.108 0.892 32 H 0.095 0.905 33 H 0.101 0.899 34 H 0.199 0.801 35 H 0.085 0.915 36 H 0.083 0.917 37 H 0.030 0.970 38 H 0.078 0.922 39 H 0.349 0.651 40 H 0.031 0.969 41 H 0.082 0.918 42 H 0.090 0.910 43 H 0.096 0.904 44 H 0.119 0.881 45 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.394 -14.702 9.102 21.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.492 5.492 2 C -0.165 4.165 3 Si 0.767 3.233 4 H -0.197 1.197 5 H -0.201 1.201 6 H -0.191 1.191 7 C -0.471 4.471 8 H 0.111 0.889 9 O -0.074 6.074 10 C 0.108 3.892 11 C -0.257 4.257 12 C -0.072 4.072 13 C -0.227 4.227 14 C 0.027 3.973 15 N -0.227 5.227 16 C 0.089 3.911 17 N -0.264 5.264 18 C 0.050 3.950 19 C -0.267 4.267 20 C 0.325 3.675 21 O -0.409 6.409 22 C -0.091 4.091 23 C -0.051 4.051 24 N -0.349 5.349 25 C -0.049 4.049 26 C -0.108 4.108 27 C -0.062 4.062 28 C -0.216 4.216 29 H 0.082 0.918 30 H 0.147 0.853 31 H 0.126 0.874 32 H 0.113 0.887 33 H 0.119 0.881 34 H 0.216 0.784 35 H 0.104 0.896 36 H 0.101 0.899 37 H 0.048 0.952 38 H 0.096 0.904 39 H 0.169 0.831 40 H 0.049 0.951 41 H 0.100 0.900 42 H 0.108 0.892 43 H 0.114 0.886 44 H 0.136 0.864 45 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 12.226 -15.052 9.049 21.399 hybrid contribution -0.534 1.625 -0.553 1.798 sum 11.693 -13.426 8.496 19.727 Atomic orbital electron populations 1.70033 1.06042 1.27955 1.45136 1.25336 0.95870 0.98975 0.96269 0.85688 0.78942 0.79855 0.78831 1.19725 1.20125 1.19107 1.21364 0.91869 0.80711 1.53135 0.88903 1.83984 1.34548 1.11581 1.77263 1.19450 0.90349 0.88011 0.91369 1.21112 0.93777 0.98859 1.11955 1.20568 0.98108 0.91637 0.96904 1.19196 0.93915 0.93166 1.16453 1.20758 1.00781 0.97782 0.77983 1.47161 1.20211 1.41094 1.14275 1.24915 0.86079 0.89611 0.90467 1.68477 1.32833 1.21754 1.03310 1.20937 0.88872 0.88910 0.96259 1.21228 1.01045 1.09643 0.94826 1.17018 0.83757 0.79474 0.87255 1.90898 1.25490 1.51937 1.72625 1.20464 0.97438 0.96153 0.95074 1.21557 0.94927 0.98490 0.90171 1.57548 1.09868 1.58292 1.09204 1.21436 0.90225 0.93788 0.99488 1.20878 0.99905 1.02433 0.87566 1.20648 0.92810 0.97262 0.95467 1.20249 0.99788 0.90223 1.11322 0.91804 0.85315 0.87445 0.88697 0.88059 0.78448 0.89647 0.89907 0.95195 0.90358 0.83137 0.95119 0.89954 0.89187 0.88593 0.86353 0.86362 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.77 13.67 55.48 0.76 -24.01 16 2 C 0.04 1.10 5.49 -17.52 -0.10 1.00 16 3 Si 0.94 19.99 29.55 -169.99 -5.02 14.97 16 4 H -0.27 -5.61 7.11 56.52 0.40 -5.20 16 5 H -0.28 -5.75 7.11 56.52 0.40 -5.35 16 6 H -0.27 -5.42 7.11 56.52 0.40 -5.02 16 7 C -0.39 -10.79 9.49 30.89 0.29 -10.50 16 8 H 0.09 2.32 5.20 -52.49 -0.27 2.05 16 9 O -0.17 -4.83 9.76 0.04 0.00 -4.83 16 10 C 0.16 3.88 6.65 -39.11 -0.26 3.62 16 11 C -0.24 -4.90 9.17 -39.39 -0.36 -5.26 16 12 C -0.05 -0.88 9.69 -39.61 -0.38 -1.26 16 13 C -0.23 -3.63 5.47 -104.57 -0.57 -4.20 16 14 C 0.15 1.81 5.51 -5.19 -0.03 1.78 16 15 N -0.51 -6.65 2.56 -122.37 -0.31 -6.96 16 16 C 0.37 4.10 11.46 -90.41 -1.04 3.07 16 17 N -0.54 -6.58 10.37 -10.66 -0.11 -6.69 16 18 C 0.17 2.08 5.90 -82.57 -0.49 1.60 16 19 C -0.26 -3.54 5.01 -104.49 -0.52 -4.07 16 20 C 0.53 8.12 7.44 -15.08 -0.11 8.01 16 21 O -0.53 -9.58 15.43 4.94 0.08 -9.50 16 22 C -0.05 -0.62 5.47 -27.47 -0.15 -0.77 16 23 C 0.08 0.85 6.30 -4.46 -0.03 0.82 16 24 N -0.72 -6.54 6.29 -115.67 -0.73 -7.27 16 25 C 0.08 0.74 6.28 -4.51 -0.03 0.71 16 26 C -0.07 -0.66 5.64 -27.42 -0.15 -0.81 16 27 C -0.04 -0.80 9.69 -39.61 -0.38 -1.18 16 28 C -0.20 -4.22 9.99 -39.39 -0.39 -4.61 16 29 H 0.27 7.18 8.31 -40.82 -0.34 6.84 16 30 H 0.13 2.64 5.64 -52.49 -0.30 2.35 16 31 H 0.11 1.35 8.06 -52.49 -0.42 0.93 16 32 H 0.09 0.81 7.95 -51.93 -0.41 0.39 16 33 H 0.10 1.30 7.41 -51.93 -0.38 0.92 16 34 H 0.20 1.37 8.02 -52.49 -0.42 0.95 16 35 H 0.08 1.10 7.28 -51.93 -0.38 0.73 16 36 H 0.08 0.88 7.20 -51.93 -0.37 0.51 16 37 H 0.03 0.40 7.87 -51.93 -0.41 -0.01 16 38 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.35 2.58 8.88 -39.30 -0.35 2.23 16 40 H 0.03 0.35 7.86 -51.93 -0.41 -0.06 16 41 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 42 H 0.09 0.76 8.13 -51.93 -0.42 0.34 16 43 H 0.10 0.86 7.20 -51.93 -0.37 0.48 16 44 H 0.12 2.12 7.67 -52.49 -0.40 1.72 16 45 H 0.12 2.50 8.06 -52.49 -0.42 2.08 16 LS Contribution 370.61 15.07 5.59 5.59 Total: -1.00 -33.24 370.61 -10.19 -43.43 By element: Atomic # 1 Polarization: 13.07 SS G_CDS: -5.73 Total: 7.34 kcal Atomic # 6 Polarization: -7.36 SS G_CDS: -4.71 Total: -12.07 kcal Atomic # 7 Polarization: -44.53 SS G_CDS: -0.39 Total: -44.93 kcal Atomic # 8 Polarization: -14.40 SS G_CDS: 0.08 Total: -14.33 kcal Atomic # 14 Polarization: 19.99 SS G_CDS: -5.02 Total: 14.97 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -33.24 -10.19 -43.43 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000830507068.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.867 kcal (2) G-P(sol) polarization free energy of solvation -33.238 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.429 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.438 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds