Wall clock time and date at job start Sat Apr 11 2020 06:17:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86798 * 120.00095 * 2 1 4 4 H 1.48506 * 109.47297 * 359.97438 * 3 2 1 5 5 H 1.48503 * 109.47261 * 239.99845 * 3 2 1 6 6 H 1.48500 * 109.47454 * 119.99838 * 3 2 1 7 7 C 1.38801 * 120.00132 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99941 * 179.97438 * 7 2 1 9 9 S 1.76199 * 119.99705 * 0.02562 * 7 2 1 10 10 C 1.80995 * 99.99933 * 179.97438 * 9 7 2 11 11 C 1.50701 * 109.47163 * 179.97438 * 10 9 7 12 12 O 1.21280 * 120.00101 * 0.02562 * 11 10 9 13 13 N 1.34776 * 119.99720 * 180.02562 * 11 10 9 14 14 C 1.47422 * 125.65305 * 359.68675 * 13 11 10 15 15 C 1.54688 * 104.94401 * 204.07616 * 14 13 11 16 16 H 1.08992 * 110.81822 * 81.32911 * 15 14 13 17 17 C 1.53002 * 111.13535 * 205.09435 * 15 14 13 18 18 C 1.52998 * 109.47521 * 292.38962 * 17 15 14 19 19 C 1.53002 * 109.47521 * 179.97438 * 18 17 15 20 20 C 1.53000 * 109.47162 * 59.99731 * 19 18 17 21 21 C 1.52998 * 109.47121 * 300.00513 * 20 19 18 22 22 C 1.53000 * 109.47162 * 172.38694 * 17 15 14 23 23 C 1.55151 * 101.67964 * 323.27579 * 15 14 13 24 24 C 1.47033 * 125.64739 * 180.02562 * 13 11 10 25 25 H 1.08997 * 109.87760 * 298.32214 * 24 13 11 26 26 C 1.50700 * 109.88203 * 59.48182 * 24 13 11 27 27 O 1.20824 * 119.99632 * 18.54887 * 26 24 13 28 28 O 1.34222 * 119.99900 * 198.54764 * 26 24 13 29 29 H 0.97001 * 120.00200 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.47176 * 299.99944 * 10 9 7 31 31 H 1.08998 * 109.47231 * 59.99799 * 10 9 7 32 32 H 1.08994 * 110.36838 * 323.01333 * 14 13 11 33 33 H 1.09010 * 110.36596 * 85.33107 * 14 13 11 34 34 H 1.09004 * 109.47082 * 52.38978 * 17 15 14 35 35 H 1.09004 * 109.46955 * 300.00093 * 18 17 15 36 36 H 1.09005 * 109.46965 * 59.99526 * 18 17 15 37 37 H 1.09004 * 109.47082 * 300.00016 * 19 18 17 38 38 H 1.08997 * 109.47151 * 179.97438 * 19 18 17 39 39 H 1.08998 * 109.47031 * 179.97438 * 20 19 18 40 40 H 1.09004 * 109.46890 * 60.00167 * 20 19 18 41 41 H 1.09004 * 109.46955 * 299.99613 * 21 20 19 42 42 H 1.08996 * 109.47085 * 179.97438 * 21 20 19 43 43 H 1.08997 * 109.47282 * 300.00158 * 22 17 15 44 44 H 1.09004 * 109.46890 * 60.00167 * 22 17 15 45 45 H 1.08997 * 110.72545 * 276.97449 * 23 15 14 46 46 H 1.09001 * 110.71993 * 153.69769 * 23 15 14 47 47 H 0.96705 * 117.00383 * 180.02562 * 28 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 1.2853 2.7465 -0.0006 5 1 3.1041 1.6964 -1.2125 6 1 3.1040 1.6964 1.2125 7 6 2.0103 -1.2020 0.0005 8 1 3.0903 -1.2020 0.0001 9 16 1.1292 -2.7279 0.0005 10 6 2.5157 -3.8914 0.0005 11 6 1.9872 -5.3027 0.0012 12 8 0.7910 -5.5023 0.0011 13 7 2.8440 -6.3430 0.0018 14 6 4.3150 -6.2448 -0.0046 15 6 4.8014 -7.5822 -0.6110 16 1 4.7464 -7.5568 -1.6992 17 6 6.2198 -7.9160 -0.1444 18 6 7.2036 -6.9075 -0.7410 19 6 8.6219 -7.2410 -0.2738 20 6 8.9932 -8.6511 -0.7371 21 6 8.0094 -9.6595 -0.1405 22 6 6.5907 -9.3260 -0.6081 23 6 3.7728 -8.5852 -0.0252 24 6 2.4665 -7.7641 0.0019 25 1 1.9009 -7.9972 0.9040 26 6 1.6399 -8.0749 -1.2192 27 8 1.6600 -7.3275 -2.1684 28 8 0.8816 -9.1818 -1.2524 29 1 -0.4850 -0.8400 -0.0004 30 1 3.1243 -3.7313 -0.8894 31 1 3.1244 -3.7313 0.8905 32 1 4.6366 -5.4076 -0.6240 33 1 4.6921 -6.1325 1.0120 34 1 6.2651 -7.8677 0.9437 35 1 7.1583 -6.9558 -1.8290 36 1 6.9393 -5.9030 -0.4106 37 1 8.6669 -7.1924 0.8142 38 1 9.3228 -6.5228 -0.6993 39 1 10.0038 -8.8884 -0.4047 40 1 8.9482 -8.6997 -1.8251 41 1 8.0544 -9.6109 0.9476 42 1 8.2736 -10.6640 -0.4709 43 1 5.8898 -10.0445 -0.1830 44 1 6.5453 -9.3743 -1.6962 45 1 4.0596 -8.8877 0.9819 46 1 3.6684 -9.4541 -0.6750 47 1 0.3692 -9.3391 -2.0573 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000833067777.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:59 Heat of formation + Delta-G solvation = -181.053919 kcal Electronic energy + Delta-G solvation = -28184.087530 eV Core-core repulsion = 24262.475299 eV Total energy + Delta-G solvation = -3921.612231 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.149 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.19808 -40.50830 -39.85511 -38.02432 -37.13085 -34.77484 -33.97197 -32.59418 -31.56208 -30.17650 -29.36613 -27.11941 -25.65955 -24.23196 -23.23950 -22.78665 -21.25671 -20.74817 -20.63195 -20.07911 -19.19404 -18.48208 -18.07733 -17.14116 -16.73369 -16.55057 -16.30857 -16.06233 -15.72500 -15.42762 -15.01717 -14.89712 -14.72798 -14.58930 -14.40720 -14.34317 -14.05344 -13.80536 -13.69166 -13.56280 -13.35027 -12.92277 -12.74814 -12.68377 -12.55926 -12.26763 -12.09560 -11.96107 -11.89798 -11.81835 -11.59679 -11.53106 -11.26263 -11.24362 -11.11517 -10.81199 -10.74024 -10.36941 -10.01244 -8.95274 -8.92121 -6.31160 0.95614 1.11808 1.30740 1.49917 1.59945 1.76456 1.81032 2.12287 2.32045 3.00218 3.02931 3.26160 3.28297 3.60761 3.68202 3.94848 4.01045 4.03534 4.04773 4.14123 4.16218 4.24940 4.31337 4.45243 4.48941 4.56231 4.65627 4.71083 4.72713 4.73602 4.77124 4.86120 4.87935 5.04686 5.06716 5.21071 5.27327 5.36074 5.37941 5.40513 5.49063 5.49591 5.54508 5.61287 5.69583 6.10339 6.12364 6.81409 6.92817 7.03935 8.48036 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.010941 B = 0.003102 C = 0.002488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2558.568394 B = 9025.302219 C =11250.235426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C -0.019 4.019 3 Si 1.138 2.862 4 H -0.280 1.280 5 H -0.264 1.264 6 H -0.260 1.260 7 C -0.612 4.612 8 H 0.076 0.924 9 S -0.195 6.195 10 C -0.098 4.098 11 C 0.551 3.449 12 O -0.559 6.559 13 N -0.601 5.601 14 C 0.095 3.905 15 C -0.087 4.087 16 H 0.073 0.927 17 C -0.063 4.063 18 C -0.121 4.121 19 C -0.118 4.118 20 C -0.122 4.122 21 C -0.117 4.117 22 C -0.114 4.114 23 C -0.097 4.097 24 C 0.140 3.860 25 H 0.120 0.880 26 C 0.469 3.531 27 O -0.545 6.545 28 O -0.506 6.506 29 H 0.259 0.741 30 H 0.102 0.898 31 H 0.116 0.884 32 H 0.076 0.924 33 H 0.103 0.897 34 H 0.092 0.908 35 H 0.054 0.946 36 H 0.061 0.939 37 H 0.067 0.933 38 H 0.057 0.943 39 H 0.062 0.938 40 H 0.054 0.946 41 H 0.068 0.932 42 H 0.064 0.936 43 H 0.078 0.922 44 H 0.055 0.945 45 H 0.130 0.870 46 H 0.105 0.895 47 H 0.425 0.575 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.697 -24.878 1.372 32.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.222 4.222 3 Si 0.955 3.045 4 H -0.205 1.205 5 H -0.189 1.189 6 H -0.184 1.184 7 C -0.760 4.760 8 H 0.094 0.906 9 S 0.032 5.968 10 C -0.249 4.249 11 C 0.339 3.661 12 O -0.437 6.437 13 N -0.336 5.336 14 C -0.026 4.026 15 C -0.107 4.107 16 H 0.091 0.909 17 C -0.082 4.082 18 C -0.158 4.158 19 C -0.156 4.156 20 C -0.159 4.159 21 C -0.155 4.155 22 C -0.151 4.151 23 C -0.135 4.135 24 C 0.034 3.966 25 H 0.138 0.862 26 C 0.311 3.689 27 O -0.434 6.434 28 O -0.319 6.319 29 H 0.070 0.930 30 H 0.121 0.879 31 H 0.134 0.866 32 H 0.095 0.905 33 H 0.121 0.879 34 H 0.110 0.890 35 H 0.073 0.927 36 H 0.080 0.920 37 H 0.086 0.914 38 H 0.076 0.924 39 H 0.081 0.919 40 H 0.073 0.927 41 H 0.086 0.914 42 H 0.083 0.917 43 H 0.097 0.903 44 H 0.074 0.926 45 H 0.148 0.852 46 H 0.123 0.877 47 H 0.287 0.713 Dipole moment (debyes) X Y Z Total from point charges 18.899 -23.242 1.465 29.992 hybrid contribution 0.451 -1.144 -1.038 1.610 sum 19.350 -24.386 0.427 31.134 Atomic orbital electron populations 1.70917 1.08051 1.29935 1.45872 1.27901 0.96300 1.06438 0.91574 0.82717 0.73947 0.69313 0.78545 1.20490 1.18874 1.18423 1.24014 0.96517 0.92518 1.62938 0.90551 1.85087 1.13031 1.01258 1.97459 1.23121 1.02154 0.92972 1.06635 1.19783 0.85489 0.86063 0.74742 1.90684 1.17038 1.85641 1.50358 1.48292 1.08459 1.03608 1.73289 1.22788 0.76540 1.00045 1.03184 1.22390 0.95604 0.92453 1.00215 0.90866 1.21057 0.90306 0.95504 1.01305 1.21643 0.94985 0.98829 1.00384 1.21512 0.95999 0.96799 1.01254 1.21556 0.99112 0.94934 1.00334 1.21526 0.94374 0.98622 1.00946 1.21608 0.97070 0.95602 1.00847 1.22825 0.87836 0.96894 1.05923 1.21482 0.98446 0.82673 0.93994 0.86231 1.24216 0.77476 0.77764 0.89451 1.90738 1.64108 1.49414 1.39150 1.84446 1.56768 1.42431 1.48284 0.92968 0.87949 0.86594 0.90550 0.87885 0.88993 0.92722 0.91991 0.91447 0.92415 0.91882 0.92716 0.91359 0.91683 0.90344 0.92639 0.85157 0.87662 0.71307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -59.17 13.67 21.65 0.30 -58.87 16 2 C -0.02 -1.13 5.49 84.86 0.47 -0.67 16 3 Si 1.14 49.90 29.92 68.60 2.05 51.95 16 4 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 5 H -0.26 -10.60 7.11 99.48 0.71 -9.90 16 6 H -0.26 -10.27 7.11 99.48 0.71 -9.57 16 7 C -0.61 -36.15 9.50 67.95 0.65 -35.50 16 8 H 0.08 4.20 7.80 -2.91 -0.02 4.18 16 9 S -0.20 -11.22 19.60 -56.49 -1.11 -12.32 16 10 C -0.10 -4.17 5.17 71.24 0.37 -3.80 16 11 C 0.55 22.36 7.21 87.66 0.63 22.99 16 12 O -0.56 -27.72 15.49 -3.03 -0.05 -27.77 16 13 N -0.60 -17.11 2.79 -792.60 -2.21 -19.32 16 14 C 0.10 1.81 5.40 86.78 0.47 2.28 16 15 C -0.09 -1.18 2.55 -9.48 -0.02 -1.21 16 16 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 17 C -0.06 -0.58 1.71 -10.79 -0.02 -0.60 16 18 C -0.12 -1.39 5.06 30.59 0.15 -1.23 16 19 C -0.12 -1.20 5.92 30.59 0.18 -1.02 16 20 C -0.12 -1.12 5.92 30.59 0.18 -0.94 16 21 C -0.12 -0.88 5.92 30.61 0.18 -0.70 16 22 C -0.11 -0.89 4.99 30.61 0.15 -0.73 16 23 C -0.10 -1.13 4.82 31.78 0.15 -0.98 16 24 C 0.14 3.15 3.41 44.59 0.15 3.30 16 25 H 0.12 2.52 8.14 -2.39 -0.02 2.51 16 26 C 0.47 13.10 6.68 71.24 0.48 13.57 16 27 O -0.54 -20.44 16.72 22.51 0.38 -20.06 16 28 O -0.51 -10.36 13.42 -51.34 -0.69 -11.04 16 29 H 0.26 17.56 7.12 -92.71 -0.66 16.90 16 30 H 0.10 4.16 7.84 -2.40 -0.02 4.14 16 31 H 0.12 4.37 8.14 -2.40 -0.02 4.35 16 32 H 0.08 1.58 7.42 -2.39 -0.02 1.57 16 33 H 0.10 1.48 7.98 -2.38 -0.02 1.46 16 34 H 0.09 0.65 8.08 -2.39 -0.02 0.63 16 35 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 36 H 0.06 0.77 7.52 -2.38 -0.02 0.75 16 37 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 38 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 39 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 40 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 41 H 0.07 0.46 8.14 -2.39 -0.02 0.44 16 42 H 0.06 0.45 8.14 -2.39 -0.02 0.43 16 43 H 0.08 0.43 7.27 -2.39 -0.02 0.41 16 44 H 0.05 0.54 8.14 -2.39 -0.02 0.52 16 45 H 0.13 0.74 8.04 -2.39 -0.02 0.73 16 46 H 0.10 0.98 7.79 -2.39 -0.02 0.96 16 47 H 0.43 5.64 9.10 -74.05 -0.67 4.97 16 Total: -1.00 -87.77 388.23 3.24 -84.53 By element: Atomic # 1 Polarization: 17.76 SS G_CDS: 0.40 Total: 18.16 kcal Atomic # 6 Polarization: -9.41 SS G_CDS: 4.17 Total: -5.24 kcal Atomic # 7 Polarization: -76.28 SS G_CDS: -1.92 Total: -78.20 kcal Atomic # 8 Polarization: -58.52 SS G_CDS: -0.36 Total: -58.87 kcal Atomic # 14 Polarization: 49.90 SS G_CDS: 2.05 Total: 51.95 kcal Atomic # 16 Polarization: -11.22 SS G_CDS: -1.11 Total: -12.32 kcal Total: -87.77 3.24 -84.53 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000833067777.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.527 kcal (2) G-P(sol) polarization free energy of solvation -87.768 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -184.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.242 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.526 kcal (6) G-S(sol) free energy of system = (1) + (5) -181.054 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds