Wall clock time and date at job start Sat Apr 11 2020 06:18:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86794 * 120.00323 * 2 1 4 4 H 1.48500 * 109.47289 * 269.99788 * 3 2 1 5 5 H 1.48497 * 109.47161 * 29.99778 * 3 2 1 6 6 H 1.48505 * 109.47253 * 150.00033 * 3 2 1 7 7 C 1.37885 * 119.99617 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00021 * 175.14391 * 7 2 1 9 9 C 1.50701 * 119.99800 * 355.42241 * 7 2 1 10 10 C 1.52996 * 115.55247 * 274.92003 * 9 7 2 11 11 O 1.45204 * 109.47414 * 296.16755 * 10 9 7 12 12 C 1.34746 * 116.99812 * 184.87585 * 11 10 9 13 13 O 1.21513 * 120.00165 * 5.10463 * 12 11 10 14 14 C 1.47387 * 119.99562 * 185.09913 * 12 11 10 15 15 C 1.36668 * 125.77944 * 184.77008 * 14 12 11 16 16 N 1.34780 * 106.83637 * 179.83793 * 15 14 12 17 17 C 1.46504 * 126.58798 * 180.12150 * 16 15 14 18 18 C 1.53001 * 109.46947 * 125.31995 * 17 16 15 19 19 C 1.50700 * 109.46885 * 180.02562 * 18 17 16 20 20 C 1.38232 * 120.00142 * 269.72340 * 19 18 17 21 21 C 1.38239 * 119.99786 * 179.76857 * 20 19 18 22 22 C 1.38233 * 120.00038 * 0.50481 * 21 20 19 23 23 C 1.38238 * 120.00025 * 359.75463 * 22 21 20 24 24 C 1.38229 * 119.99964 * 359.97438 * 23 22 21 25 25 N 1.40212 * 106.82809 * 0.41400 * 16 15 14 26 26 N 1.28759 * 108.38281 * 359.73318 * 25 16 15 27 27 C 1.52998 * 117.49426 * 129.25422 * 9 7 2 28 28 C 1.53000 * 117.49993 * 60.59586 * 9 7 2 29 29 H 0.97003 * 119.99369 * 5.00359 * 1 2 3 30 30 H 1.09005 * 109.46944 * 56.16148 * 10 9 7 31 31 H 1.08996 * 109.47217 * 176.16433 * 10 9 7 32 32 H 1.08004 * 126.58541 * 359.95722 * 15 14 12 33 33 H 1.08998 * 109.47091 * 245.31944 * 17 16 15 34 34 H 1.08998 * 109.46816 * 5.32149 * 17 16 15 35 35 H 1.08996 * 109.46994 * 300.00401 * 18 17 16 36 36 H 1.08998 * 109.47237 * 60.00411 * 18 17 16 37 37 H 1.08002 * 120.00057 * 0.02562 * 20 19 18 38 38 H 1.08001 * 119.99881 * 180.23800 * 21 20 19 39 39 H 1.08002 * 119.99979 * 179.72336 * 22 21 20 40 40 H 1.07997 * 119.99904 * 179.97438 * 23 22 21 41 41 H 1.08002 * 120.00392 * 179.97438 * 24 23 22 42 42 H 1.09002 * 117.50398 * 359.97438 * 27 9 7 43 43 H 1.09003 * 117.49661 * 145.02235 * 27 9 7 44 44 H 1.08995 * 117.50037 * 214.97529 * 28 9 7 45 45 H 1.09005 * 117.49642 * 359.97438 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5468 1.4400 0.7000 7 6 2.0045 -1.1942 0.0005 8 1 3.0816 -1.1960 -0.0786 9 6 1.2545 -2.4971 0.1053 10 6 0.9187 -2.9528 1.5267 11 8 2.1479 -3.2134 2.2545 12 6 2.0272 -3.7223 3.4963 13 8 0.9318 -4.0290 3.9235 14 6 3.2241 -3.9069 4.3364 15 6 3.2515 -4.4941 5.5703 16 7 4.5325 -4.4649 5.9881 17 6 5.0492 -4.9838 7.2570 18 6 6.1864 -5.9691 6.9798 19 6 6.7174 -6.5034 8.2850 20 6 7.7545 -5.8532 8.9272 21 6 8.2384 -6.3407 10.1269 22 6 7.6921 -7.4842 10.6790 23 6 6.6586 -8.1375 10.0340 24 6 6.1710 -7.6469 8.8373 25 7 5.2747 -3.8363 4.9782 26 7 4.4729 -3.5213 4.0213 27 6 1.5728 -3.5803 -0.9273 28 6 0.2451 -2.8218 -0.9977 29 1 -0.4849 0.8369 -0.0733 30 1 0.3543 -2.1711 2.0351 31 1 0.3213 -3.8635 1.4846 32 1 2.4087 -4.9046 6.1066 33 1 5.4233 -4.1579 7.8620 34 1 4.2492 -5.4940 7.7935 35 1 5.8122 -6.7949 6.3748 36 1 6.9864 -5.4590 6.4433 37 1 8.1840 -4.9621 8.4939 38 1 9.0461 -5.8306 10.6307 39 1 8.0732 -7.8676 11.6141 40 1 6.2321 -9.0311 10.4652 41 1 5.3638 -8.1574 8.3331 42 1 2.3243 -3.3505 -1.6826 43 1 1.5425 -4.6177 -0.5940 44 1 -0.6580 -3.3604 -0.7108 45 1 0.1232 -2.0928 -1.7989 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000835188795.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:04 Heat of formation + Delta-G solvation = 61.409733 kcal Electronic energy + Delta-G solvation = -27511.624179 eV Core-core repulsion = 23497.374760 eV Total energy + Delta-G solvation = -4014.249419 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.24811 -39.82650 -39.46107 -36.72329 -35.92719 -35.20274 -33.03659 -31.87019 -31.38630 -31.08404 -29.19489 -26.96964 -25.32033 -25.07350 -23.63756 -23.07294 -22.17492 -21.48061 -21.08641 -20.28950 -19.20371 -17.98547 -17.30211 -16.68424 -16.42514 -16.25581 -15.89489 -15.57626 -15.43589 -15.14566 -14.76288 -14.50669 -14.27027 -13.89443 -13.83471 -13.70733 -13.42501 -13.09889 -12.76028 -12.47068 -12.13355 -12.07189 -11.84792 -11.59955 -11.55984 -11.42884 -11.15061 -10.88525 -10.81888 -10.52518 -10.48274 -10.28056 -10.15216 -9.85317 -9.44595 -9.41835 -9.37470 -9.21831 -8.84547 -8.37716 -8.13576 -5.97779 -4.03601 0.77166 0.90569 1.04563 1.73482 1.84431 3.19133 3.25653 3.35009 3.36884 3.41953 3.49057 3.99098 4.15372 4.29221 4.34726 4.44481 4.47082 4.54177 4.65012 4.70057 4.73791 4.88051 5.00236 5.01554 5.14616 5.29671 5.31211 5.36645 5.44002 5.55411 5.58125 5.80893 5.96230 6.00595 6.03486 6.09048 6.18729 6.28659 6.35922 6.49684 6.56011 6.70299 6.81000 7.10336 7.15194 7.40863 7.56631 7.92143 7.95690 8.36054 8.48636 8.98740 9.61719 11.10053 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.020595 B = 0.001897 C = 0.001808 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1359.212184 B =14756.809206 C =15481.107215 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.067 3.933 3 Si 0.891 3.109 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.271 1.271 7 C -0.483 4.483 8 H 0.064 0.936 9 C 0.033 3.967 10 C 0.115 3.885 11 O -0.314 6.314 12 C 0.545 3.455 13 O -0.521 6.521 14 C -0.075 4.075 15 C 0.094 3.906 16 N -0.366 5.366 17 C 0.129 3.871 18 C -0.093 4.093 19 C -0.086 4.086 20 C -0.111 4.111 21 C -0.118 4.118 22 C -0.120 4.120 23 C -0.119 4.119 24 C -0.114 4.114 25 N -0.066 5.066 26 N -0.170 5.170 27 C -0.205 4.205 28 C -0.138 4.138 29 H 0.260 0.740 30 H 0.074 0.926 31 H 0.044 0.956 32 H 0.207 0.793 33 H 0.101 0.899 34 H 0.106 0.894 35 H 0.083 0.917 36 H 0.094 0.906 37 H 0.126 0.874 38 H 0.123 0.877 39 H 0.122 0.878 40 H 0.123 0.877 41 H 0.124 0.876 42 H 0.081 0.919 43 H 0.065 0.935 44 H 0.064 0.936 45 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.956 -15.824 22.094 29.690 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.136 4.136 3 Si 0.719 3.281 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.195 1.195 7 C -0.520 4.520 8 H 0.082 0.918 9 C 0.032 3.968 10 C 0.042 3.958 11 O -0.227 6.227 12 C 0.387 3.613 13 O -0.411 6.411 14 C -0.212 4.212 15 C -0.062 4.062 16 N -0.151 5.151 17 C 0.008 3.992 18 C -0.131 4.131 19 C -0.087 4.087 20 C -0.129 4.129 21 C -0.136 4.136 22 C -0.138 4.138 23 C -0.137 4.137 24 C -0.132 4.132 25 N -0.047 5.047 26 N -0.045 5.045 27 C -0.243 4.243 28 C -0.176 4.176 29 H 0.070 0.930 30 H 0.092 0.908 31 H 0.062 0.938 32 H 0.223 0.777 33 H 0.119 0.881 34 H 0.124 0.876 35 H 0.102 0.898 36 H 0.112 0.888 37 H 0.144 0.856 38 H 0.141 0.859 39 H 0.140 0.860 40 H 0.141 0.859 41 H 0.142 0.858 42 H 0.099 0.901 43 H 0.084 0.916 44 H 0.082 0.918 45 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 12.840 -15.310 21.820 29.587 hybrid contribution -0.722 0.520 0.540 1.040 sum 12.118 -14.790 22.359 29.420 Atomic orbital electron populations 1.69993 1.05838 1.26761 1.49616 1.25012 0.94884 0.99044 0.94622 0.86590 0.80181 0.83263 0.78097 1.20688 1.21272 1.19525 1.20416 0.93025 0.88171 1.50432 0.91760 1.18789 0.99665 0.93934 0.84401 1.23000 0.81535 0.98205 0.93049 1.86705 1.39148 1.72199 1.24684 1.19493 0.85833 0.74443 0.81483 1.90815 1.27026 1.49419 1.73856 1.20527 0.92645 1.12048 0.95956 1.23301 0.88922 0.98637 0.95360 1.50567 1.06304 1.41202 1.16994 1.22033 0.98410 0.98383 0.80348 1.20856 0.98172 0.98932 0.95185 1.19634 0.97023 0.96043 0.95960 1.21152 0.96412 0.99937 0.95395 1.21198 1.00012 0.96555 0.95861 1.21223 0.96766 0.95818 1.00029 1.21179 0.97028 0.99996 0.95472 1.21116 1.00015 0.95996 0.96028 1.82052 1.15992 1.14047 0.92630 1.74892 1.00238 1.11579 1.17763 1.23009 1.00259 0.95599 1.05393 1.22522 0.90830 1.01372 1.02850 0.93021 0.90815 0.93788 0.77680 0.88125 0.87575 0.89829 0.88787 0.85647 0.85867 0.86030 0.85903 0.85849 0.90053 0.91625 0.91773 0.89101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.30 12.65 55.43 0.70 -24.60 16 2 C 0.07 1.87 5.43 -17.82 -0.10 1.78 16 3 Si 0.89 21.80 29.54 -169.99 -5.02 16.78 16 4 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 5 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 6 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 7 C -0.48 -13.59 8.75 -34.44 -0.30 -13.89 16 8 H 0.06 1.84 7.82 -52.49 -0.41 1.43 16 9 C 0.03 0.83 1.70 -155.66 -0.26 0.57 16 10 C 0.12 2.79 5.39 37.16 0.20 2.99 16 11 O -0.31 -7.34 10.14 -40.61 -0.41 -7.75 16 12 C 0.55 11.02 7.95 34.45 0.27 11.29 16 13 O -0.52 -10.79 16.57 -19.28 -0.32 -11.11 16 14 C -0.07 -1.26 7.02 -83.57 -0.59 -1.85 16 15 C 0.09 1.10 11.28 -16.82 -0.19 0.91 16 16 N -0.37 -3.90 3.69 -61.05 -0.23 -4.13 16 17 C 0.13 0.79 6.52 -4.04 -0.03 0.76 16 18 C -0.09 -0.57 5.55 -27.88 -0.15 -0.73 16 19 C -0.09 -0.51 5.13 -104.62 -0.54 -1.05 16 20 C -0.11 -0.67 9.70 -39.58 -0.38 -1.05 16 21 C -0.12 -0.66 10.05 -39.58 -0.40 -1.06 16 22 C -0.12 -0.65 10.05 -39.58 -0.40 -1.05 16 23 C -0.12 -0.64 10.05 -39.58 -0.40 -1.04 16 24 C -0.11 -0.64 9.70 -39.58 -0.38 -1.02 16 25 N -0.07 -0.99 13.64 60.35 0.82 -0.16 16 26 N -0.17 -3.09 12.39 32.83 0.41 -2.69 16 27 C -0.21 -4.64 9.96 -26.69 -0.27 -4.90 16 28 C -0.14 -3.28 9.15 -26.69 -0.24 -3.53 16 29 H 0.26 7.11 8.32 -40.82 -0.34 6.77 16 30 H 0.07 1.91 8.14 -51.93 -0.42 1.49 16 31 H 0.04 0.99 7.93 -51.93 -0.41 0.57 16 32 H 0.21 1.61 8.06 -52.48 -0.42 1.19 16 33 H 0.10 0.54 8.14 -51.93 -0.42 0.11 16 34 H 0.11 0.38 8.08 -51.93 -0.42 -0.04 16 35 H 0.08 0.53 8.08 -51.93 -0.42 0.11 16 36 H 0.09 0.68 8.08 -51.93 -0.42 0.26 16 37 H 0.13 0.63 8.06 -52.49 -0.42 0.21 16 38 H 0.12 0.49 8.06 -52.49 -0.42 0.07 16 39 H 0.12 0.44 8.06 -52.49 -0.42 0.02 16 40 H 0.12 0.45 8.06 -52.49 -0.42 0.03 16 41 H 0.12 0.52 8.06 -52.49 -0.42 0.10 16 42 H 0.08 1.81 8.14 -51.93 -0.42 1.39 16 43 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 44 H 0.06 1.41 8.14 -51.93 -0.42 0.99 16 45 H 0.09 2.28 8.14 -51.93 -0.42 1.86 16 LS Contribution 398.84 15.07 6.01 6.01 Total: -1.00 -33.73 398.84 -8.48 -42.21 By element: Atomic # 1 Polarization: 4.60 SS G_CDS: -6.29 Total: -1.69 kcal Atomic # 6 Polarization: -8.71 SS G_CDS: -4.15 Total: -12.86 kcal Atomic # 7 Polarization: -33.28 SS G_CDS: 1.71 Total: -31.58 kcal Atomic # 8 Polarization: -18.13 SS G_CDS: -0.73 Total: -18.86 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -33.73 -8.48 -42.21 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835188795.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.620 kcal (2) G-P(sol) polarization free energy of solvation -33.729 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.210 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.410 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds