Wall clock time and date at job start Sat Apr 11 2020 06:18:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86794 * 120.00323 * 2 1 4 4 H 1.48500 * 109.47289 * 269.99788 * 3 2 1 5 5 H 1.48497 * 109.47161 * 29.99778 * 3 2 1 6 6 H 1.48505 * 109.47253 * 150.00033 * 3 2 1 7 7 C 1.37885 * 119.99617 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00021 * 175.14391 * 7 2 1 9 9 C 1.50701 * 119.99800 * 355.42241 * 7 2 1 10 10 C 1.52996 * 115.55247 * 274.92003 * 9 7 2 11 11 O 1.45204 * 109.47414 * 296.16755 * 10 9 7 12 12 C 1.34746 * 116.99812 * 184.87585 * 11 10 9 13 13 O 1.21513 * 120.00165 * 5.10463 * 12 11 10 14 14 C 1.47387 * 119.99562 * 185.09913 * 12 11 10 15 15 C 1.36668 * 125.77944 * 184.77008 * 14 12 11 16 16 N 1.34780 * 106.83637 * 179.83793 * 15 14 12 17 17 C 1.46504 * 126.58798 * 180.12150 * 16 15 14 18 18 C 1.53001 * 109.46947 * 125.31995 * 17 16 15 19 19 C 1.50700 * 109.46885 * 180.02562 * 18 17 16 20 20 C 1.38232 * 120.00142 * 269.72340 * 19 18 17 21 21 C 1.38239 * 119.99786 * 179.76857 * 20 19 18 22 22 C 1.38233 * 120.00038 * 0.50481 * 21 20 19 23 23 C 1.38238 * 120.00025 * 359.75463 * 22 21 20 24 24 C 1.38229 * 119.99964 * 359.97438 * 23 22 21 25 25 N 1.40212 * 106.82809 * 0.41400 * 16 15 14 26 26 N 1.28759 * 108.38281 * 359.73318 * 25 16 15 27 27 C 1.52998 * 117.49426 * 129.25422 * 9 7 2 28 28 C 1.53000 * 117.49993 * 60.59586 * 9 7 2 29 29 H 0.97003 * 119.99369 * 5.00359 * 1 2 3 30 30 H 1.09005 * 109.46944 * 56.16148 * 10 9 7 31 31 H 1.08996 * 109.47217 * 176.16433 * 10 9 7 32 32 H 1.08004 * 126.58541 * 359.95722 * 15 14 12 33 33 H 1.08998 * 109.47091 * 245.31944 * 17 16 15 34 34 H 1.08998 * 109.46816 * 5.32149 * 17 16 15 35 35 H 1.08996 * 109.46994 * 300.00401 * 18 17 16 36 36 H 1.08998 * 109.47237 * 60.00411 * 18 17 16 37 37 H 1.08002 * 120.00057 * 0.02562 * 20 19 18 38 38 H 1.08001 * 119.99881 * 180.23800 * 21 20 19 39 39 H 1.08002 * 119.99979 * 179.72336 * 22 21 20 40 40 H 1.07997 * 119.99904 * 179.97438 * 23 22 21 41 41 H 1.08002 * 120.00392 * 179.97438 * 24 23 22 42 42 H 1.09002 * 117.50398 * 359.97438 * 27 9 7 43 43 H 1.09003 * 117.49661 * 145.02235 * 27 9 7 44 44 H 1.08995 * 117.50037 * 214.97529 * 28 9 7 45 45 H 1.09005 * 117.49642 * 359.97438 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5468 1.4400 0.7000 7 6 2.0045 -1.1942 0.0005 8 1 3.0816 -1.1960 -0.0786 9 6 1.2545 -2.4971 0.1053 10 6 0.9187 -2.9528 1.5267 11 8 2.1479 -3.2134 2.2545 12 6 2.0272 -3.7223 3.4963 13 8 0.9318 -4.0290 3.9235 14 6 3.2241 -3.9069 4.3364 15 6 3.2515 -4.4941 5.5703 16 7 4.5325 -4.4649 5.9881 17 6 5.0492 -4.9838 7.2570 18 6 6.1864 -5.9691 6.9798 19 6 6.7174 -6.5034 8.2850 20 6 7.7545 -5.8532 8.9272 21 6 8.2384 -6.3407 10.1269 22 6 7.6921 -7.4842 10.6790 23 6 6.6586 -8.1375 10.0340 24 6 6.1710 -7.6469 8.8373 25 7 5.2747 -3.8363 4.9782 26 7 4.4729 -3.5213 4.0213 27 6 1.5728 -3.5803 -0.9273 28 6 0.2451 -2.8218 -0.9977 29 1 -0.4849 0.8369 -0.0733 30 1 0.3543 -2.1711 2.0351 31 1 0.3213 -3.8635 1.4846 32 1 2.4087 -4.9046 6.1066 33 1 5.4233 -4.1579 7.8620 34 1 4.2492 -5.4940 7.7935 35 1 5.8122 -6.7949 6.3748 36 1 6.9864 -5.4590 6.4433 37 1 8.1840 -4.9621 8.4939 38 1 9.0461 -5.8306 10.6307 39 1 8.0732 -7.8676 11.6141 40 1 6.2321 -9.0311 10.4652 41 1 5.3638 -8.1574 8.3331 42 1 2.3243 -3.3505 -1.6826 43 1 1.5425 -4.6177 -0.5940 44 1 -0.6580 -3.3604 -0.7108 45 1 0.1232 -2.0928 -1.7989 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000835188795.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:03 Heat of formation + Delta-G solvation = 43.384966 kcal Electronic energy + Delta-G solvation = -27512.405792 eV Core-core repulsion = 23497.374760 eV Total energy + Delta-G solvation = -4015.031031 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -43.33912 -41.11016 -40.20609 -38.55271 -36.95896 -36.64329 -33.99605 -33.73832 -32.21805 -31.76064 -29.87038 -28.71700 -27.33122 -25.80599 -25.01256 -23.46090 -23.03495 -22.93555 -22.13244 -21.47780 -21.18118 -19.14301 -18.50234 -17.85465 -17.69891 -17.43585 -17.04145 -16.85446 -16.48740 -16.17846 -15.99557 -15.70956 -15.56608 -15.03054 -14.73554 -14.42052 -14.22393 -14.07866 -13.90188 -13.81195 -13.59135 -13.32086 -13.12506 -12.88873 -12.83806 -12.62843 -12.41967 -12.16425 -12.06379 -12.00458 -11.85070 -11.80021 -11.68431 -11.42689 -11.36280 -10.87800 -10.48495 -10.43906 -10.07013 -9.80902 -9.65449 -8.11027 -6.22413 -0.00653 0.36833 0.43578 0.51363 0.99784 1.39435 1.41960 1.52894 1.72713 1.94181 2.42861 2.84717 3.10991 3.16017 3.31439 3.50640 3.71853 3.81633 3.83526 3.87518 4.00926 4.14424 4.18780 4.23286 4.29526 4.33922 4.38109 4.41389 4.50758 4.63402 4.64936 4.66680 4.85488 4.87367 4.90623 4.99392 5.15643 5.19013 5.20923 5.36776 5.40137 5.57304 5.58997 5.65677 5.67421 5.67921 5.77521 6.12243 6.37729 6.62290 6.81402 6.93379 7.45057 8.96202 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.020595 B = 0.001897 C = 0.001808 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1359.212184 B =14756.809206 C =15481.107215 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C 0.024 3.976 3 Si 0.948 3.052 4 H -0.271 1.271 5 H -0.282 1.282 6 H -0.275 1.275 7 C -0.500 4.500 8 H 0.048 0.952 9 C -0.004 4.004 10 C 0.128 3.872 11 O -0.337 6.337 12 C 0.544 3.456 13 O -0.532 6.532 14 C -0.113 4.113 15 C 0.131 3.869 16 N -0.346 5.346 17 C 0.121 3.879 18 C -0.086 4.086 19 C -0.091 4.091 20 C -0.124 4.124 21 C -0.129 4.129 22 C -0.129 4.129 23 C -0.127 4.127 24 C -0.120 4.120 25 N -0.079 5.079 26 N -0.215 5.215 27 C -0.182 4.182 28 C -0.134 4.134 29 H 0.262 0.738 30 H 0.044 0.956 31 H 0.059 0.941 32 H 0.252 0.748 33 H 0.113 0.887 34 H 0.145 0.855 35 H 0.083 0.917 36 H 0.078 0.922 37 H 0.128 0.872 38 H 0.135 0.865 39 H 0.137 0.863 40 H 0.139 0.861 41 H 0.138 0.862 42 H 0.081 0.919 43 H 0.090 0.910 44 H 0.081 0.919 45 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.259 -17.283 24.237 32.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.176 4.176 3 Si 0.773 3.227 4 H -0.196 1.196 5 H -0.207 1.207 6 H -0.200 1.200 7 C -0.538 4.538 8 H 0.066 0.934 9 C -0.004 4.004 10 C 0.055 3.945 11 O -0.251 6.251 12 C 0.388 3.612 13 O -0.422 6.422 14 C -0.250 4.250 15 C -0.027 4.027 16 N -0.129 5.129 17 C 0.002 3.998 18 C -0.124 4.124 19 C -0.091 4.091 20 C -0.142 4.142 21 C -0.147 4.147 22 C -0.147 4.147 23 C -0.145 4.145 24 C -0.138 4.138 25 N -0.060 5.060 26 N -0.090 5.090 27 C -0.219 4.219 28 C -0.171 4.171 29 H 0.071 0.929 30 H 0.063 0.937 31 H 0.078 0.922 32 H 0.268 0.732 33 H 0.131 0.869 34 H 0.163 0.837 35 H 0.102 0.898 36 H 0.097 0.903 37 H 0.146 0.854 38 H 0.153 0.847 39 H 0.155 0.845 40 H 0.157 0.843 41 H 0.156 0.844 42 H 0.100 0.900 43 H 0.109 0.891 44 H 0.100 0.900 45 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 13.176 -16.781 23.981 32.098 hybrid contribution -0.720 0.864 0.047 1.126 sum 12.455 -15.917 24.028 31.398 Atomic orbital electron populations 1.70073 1.06760 1.27448 1.50189 1.25657 0.95712 1.01817 0.94416 0.85707 0.78714 0.79797 0.78441 1.19597 1.20708 1.20037 1.20592 0.92521 0.89979 1.50698 0.93403 1.18920 1.01303 0.94387 0.85804 1.22625 0.81885 0.97801 0.92207 1.86694 1.38679 1.73198 1.26538 1.19949 0.87050 0.73550 0.80639 1.90785 1.27693 1.49979 1.73736 1.20418 0.91436 1.15442 0.97701 1.23854 0.90044 0.95578 0.93196 1.50876 1.05759 1.39136 1.17174 1.22557 0.99778 0.99077 0.78369 1.20743 0.97692 0.98712 0.95258 1.19604 0.97313 0.96444 0.95780 1.21317 0.96769 1.00360 0.95802 1.21430 1.00460 0.96904 0.95917 1.21505 0.96761 0.95716 1.00685 1.21459 0.97015 1.00549 0.95504 1.21334 1.00407 0.95840 0.96201 1.81950 1.16167 1.14669 0.93220 1.74868 1.01149 1.13290 1.19657 1.23012 0.99237 0.96081 1.03604 1.22436 0.91923 1.01275 1.01483 0.92917 0.93720 0.92241 0.73246 0.86869 0.83746 0.89796 0.90299 0.85361 0.84723 0.84534 0.84337 0.84422 0.90024 0.89133 0.90031 0.91018 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -52.65 12.65 21.45 0.27 -52.38 16 2 C 0.02 1.37 5.43 84.66 0.46 1.83 16 3 Si 0.95 45.43 29.54 68.60 2.03 47.46 16 4 H -0.27 -12.44 7.11 99.48 0.71 -11.74 16 5 H -0.28 -13.16 7.11 99.48 0.71 -12.45 16 6 H -0.28 -13.29 7.11 99.48 0.71 -12.59 16 7 C -0.50 -28.84 8.75 25.60 0.22 -28.62 16 8 H 0.05 2.83 7.82 -2.91 -0.02 2.81 16 9 C 0.00 -0.19 1.70 -52.93 -0.09 -0.28 16 10 C 0.13 6.32 5.39 71.98 0.39 6.71 16 11 O -0.34 -16.11 10.14 -56.56 -0.57 -16.68 16 12 C 0.54 22.09 7.95 70.23 0.56 22.64 16 13 O -0.53 -21.73 16.57 19.80 0.33 -21.40 16 14 C -0.11 -3.73 7.02 40.79 0.29 -3.45 16 15 C 0.13 2.71 11.28 83.87 0.95 3.66 16 16 N -0.35 -6.51 3.69 -347.05 -1.28 -7.79 16 17 C 0.12 1.07 6.52 86.38 0.56 1.64 16 18 C -0.09 -0.88 5.55 29.85 0.17 -0.71 16 19 C -0.09 -0.91 5.13 -19.86 -0.10 -1.01 16 20 C -0.12 -1.33 9.70 22.27 0.22 -1.11 16 21 C -0.13 -1.26 10.05 22.27 0.22 -1.04 16 22 C -0.13 -1.14 10.05 22.27 0.22 -0.92 16 23 C -0.13 -1.09 10.05 22.27 0.22 -0.86 16 24 C -0.12 -1.05 9.70 22.27 0.22 -0.84 16 25 N -0.08 -2.29 13.64 37.02 0.51 -1.79 16 26 N -0.22 -7.88 12.39 -50.03 -0.62 -8.50 16 27 C -0.18 -8.11 9.96 30.62 0.30 -7.81 16 28 C -0.13 -6.34 9.15 30.62 0.28 -6.06 16 29 H 0.26 14.47 8.32 -92.71 -0.77 13.69 16 30 H 0.04 2.40 8.14 -2.38 -0.02 2.38 16 31 H 0.06 2.67 7.93 -2.39 -0.02 2.65 16 32 H 0.25 2.72 8.06 -2.91 -0.02 2.69 16 33 H 0.11 0.85 8.14 -2.39 -0.02 0.83 16 34 H 0.14 0.29 8.08 -2.39 -0.02 0.27 16 35 H 0.08 0.87 8.08 -2.39 -0.02 0.85 16 36 H 0.08 1.06 8.08 -2.39 -0.02 1.04 16 37 H 0.13 1.19 8.06 -2.91 -0.02 1.17 16 38 H 0.13 0.89 8.06 -2.91 -0.02 0.87 16 39 H 0.14 0.71 8.06 -2.91 -0.02 0.68 16 40 H 0.14 0.67 8.06 -2.91 -0.02 0.65 16 41 H 0.14 0.75 8.06 -2.91 -0.02 0.72 16 42 H 0.08 3.59 8.14 -2.39 -0.02 3.57 16 43 H 0.09 3.56 8.14 -2.39 -0.02 3.54 16 44 H 0.08 3.53 8.14 -2.39 -0.02 3.51 16 45 H 0.07 3.65 8.14 -2.38 -0.02 3.63 16 Total: -1.00 -75.30 398.84 6.74 -68.57 By element: Atomic # 1 Polarization: 7.78 SS G_CDS: 0.99 Total: 8.77 kcal Atomic # 6 Polarization: -21.33 SS G_CDS: 5.09 Total: -16.24 kcal Atomic # 7 Polarization: -69.34 SS G_CDS: -1.12 Total: -70.46 kcal Atomic # 8 Polarization: -37.84 SS G_CDS: -0.25 Total: -38.09 kcal Atomic # 14 Polarization: 45.43 SS G_CDS: 2.03 Total: 47.46 kcal Total: -75.30 6.74 -68.57 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835188795.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.950 kcal (2) G-P(sol) polarization free energy of solvation -75.301 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.736 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.565 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds