Wall clock time and date at job start Sat Apr 11 2020 06:18:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86798 * 119.99747 * 2 1 4 4 H 1.48501 * 109.46780 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47312 * 299.99977 * 3 2 1 6 6 H 1.48503 * 109.47166 * 60.00239 * 3 2 1 7 7 C 1.37875 * 119.99790 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99895 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00226 * 359.97438 * 7 2 1 10 10 O 1.42896 * 110.64172 * 300.70003 * 9 7 2 11 11 C 1.55162 * 110.71796 * 177.56102 * 9 7 2 12 12 C 1.54909 * 101.57977 * 205.95893 * 11 9 7 13 13 N 1.47433 * 104.83398 * 37.00871 * 12 11 9 14 14 C 1.34773 * 125.65052 * 155.90771 * 13 12 11 15 15 O 1.21691 * 120.00367 * 178.95561 * 14 13 12 16 16 C 1.46684 * 119.99694 * 358.95424 * 14 13 12 17 17 C 1.37872 * 126.23455 * 8.26952 * 16 14 13 18 18 C 1.39836 * 107.08381 * 179.84477 * 17 16 14 19 19 C 1.35453 * 107.86440 * 0.41815 * 18 17 16 20 20 N 1.35534 * 108.87085 * 359.73515 * 19 18 17 21 21 C 1.46502 * 125.67453 * 180.02562 * 20 19 18 22 22 C 1.50704 * 109.47001 * 267.48485 * 21 20 19 23 23 C 1.38650 * 120.79036 * 264.30447 * 22 21 20 24 24 C 1.38206 * 119.16255 * 179.79776 * 23 22 21 25 25 N 1.31868 * 120.76113 * 0.48839 * 24 23 22 26 26 C 1.31863 * 121.72838 * 359.74145 * 25 24 23 27 27 C 1.38207 * 120.76481 * 0.02562 * 26 25 24 28 28 C 1.47023 * 108.69893 * 335.87207 * 13 12 11 29 29 H 0.96997 * 120.00217 * 0.02562 * 1 2 3 30 30 H 0.96703 * 113.99802 * 56.86174 * 10 9 7 31 31 H 1.08998 * 111.00305 * 324.03031 * 11 9 7 32 32 H 1.08998 * 111.00262 * 87.85086 * 11 9 7 33 33 H 1.09000 * 110.37102 * 155.84808 * 12 11 9 34 34 H 1.09005 * 110.36889 * 278.17635 * 12 11 9 35 35 H 1.08002 * 126.45303 * 359.97438 * 17 16 14 36 36 H 1.07994 * 126.06539 * 180.15018 * 18 17 16 37 37 H 1.08004 * 125.56185 * 179.72370 * 19 18 17 38 38 H 1.08994 * 109.47338 * 27.48759 * 21 20 19 39 39 H 1.08994 * 109.47125 * 147.48990 * 21 20 19 40 40 H 1.07998 * 120.41692 * 0.02562 * 23 22 21 41 41 H 1.07998 * 119.61828 * 180.20250 * 24 23 22 42 42 H 1.08010 * 119.62155 * 179.97438 * 26 25 24 43 43 H 1.08001 * 120.41769 * 179.97438 * 27 26 25 44 44 H 1.08999 * 109.88168 * 241.63945 * 28 13 12 45 45 H 1.09002 * 109.87959 * 120.48203 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8903 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 8 0.4083 -2.5943 1.1496 11 6 2.2322 -3.6995 -0.0629 12 6 1.3484 -4.7899 -0.7184 13 7 0.5271 -4.0666 -1.7063 14 6 -0.0389 -4.6069 -2.8036 15 8 -0.7151 -3.9158 -3.5425 16 6 0.1603 -6.0281 -3.1072 17 6 0.7605 -6.9602 -2.2876 18 6 0.7346 -8.1821 -2.9673 19 6 0.1409 -7.9775 -4.1674 20 7 -0.2129 -6.6728 -4.2647 21 6 -0.8815 -6.0521 -5.4110 22 6 0.1526 -5.4848 -6.3490 23 6 0.5150 -4.1482 -6.2814 24 6 1.4701 -3.6643 -7.1553 25 7 2.0272 -4.4556 -8.0512 26 6 1.7037 -5.7303 -8.1472 27 6 0.7600 -6.2856 -7.3040 28 6 0.4272 -2.6584 -1.2957 29 1 -0.4850 0.8400 -0.0004 30 1 -0.2239 -1.8676 1.2352 31 1 3.0942 -3.4673 -0.6883 32 1 2.5467 -3.9994 0.9367 33 1 1.9704 -5.5348 -1.2147 34 1 0.7124 -5.2631 0.0298 35 1 1.1711 -6.7809 -1.3049 36 1 1.1234 -9.1211 -2.6020 37 1 -0.0236 -8.7311 -4.9234 38 1 -1.4751 -6.8013 -5.9348 39 1 -1.5332 -5.2514 -5.0616 40 1 0.0593 -3.4943 -5.5527 41 1 1.7603 -2.6252 -7.1069 42 1 2.1812 -6.3474 -8.8941 43 1 0.4990 -7.3303 -7.3879 44 1 -0.6148 -2.4005 -1.1064 45 1 0.8346 -2.0151 -2.0757 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000844016375.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:15 Heat of formation + Delta-G solvation = 20.135330 kcal Electronic energy + Delta-G solvation = -30060.567353 eV Core-core repulsion = 26044.528142 eV Total energy + Delta-G solvation = -4016.039211 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.48423 -40.07221 -39.02396 -37.12428 -34.90686 -34.18579 -32.22960 -31.31651 -31.30430 -30.38287 -29.30972 -27.66416 -26.67992 -25.20236 -23.57133 -23.40848 -22.35546 -21.00330 -20.60116 -19.56714 -19.01373 -17.24116 -17.15323 -16.71513 -16.41713 -15.82864 -15.71299 -15.51831 -15.10691 -14.71173 -14.50088 -14.19815 -13.93009 -13.84768 -13.53210 -13.26323 -13.00625 -12.96804 -12.85570 -12.47019 -12.38330 -12.28903 -11.96054 -11.57527 -11.49201 -11.38692 -11.08039 -10.72718 -10.60350 -10.50786 -10.18102 -9.91105 -9.65272 -9.49503 -9.33588 -9.24078 -8.73449 -8.69895 -8.36125 -8.22969 -7.87275 -6.32986 -4.41758 0.95479 1.05973 1.66633 2.74909 2.82536 3.17597 3.26905 3.30376 3.61561 3.70253 3.82806 4.24024 4.34393 4.39891 4.43518 4.82733 4.87746 4.94619 4.96206 5.00664 5.10429 5.34268 5.38178 5.44082 5.48941 5.53977 5.71440 5.75598 5.81604 5.85400 6.00102 6.00892 6.14339 6.20388 6.29820 6.46658 6.59976 6.71449 6.80194 6.80842 6.95801 7.04000 7.20850 7.24049 7.34054 7.69491 7.84982 7.95744 8.12525 8.60196 8.65662 9.26923 9.36759 10.74600 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.012165 B = 0.003655 C = 0.003055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2301.209403 B = 7658.578336 C = 9162.676285 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.071 3.929 3 Si 0.903 3.097 4 H -0.271 1.271 5 H -0.282 1.282 6 H -0.281 1.281 7 C -0.537 4.537 8 H 0.068 0.932 9 C 0.248 3.752 10 O -0.585 6.585 11 C -0.120 4.120 12 C 0.087 3.913 13 N -0.593 5.593 14 C 0.590 3.410 15 O -0.564 6.564 16 C -0.031 4.031 17 C -0.159 4.159 18 C -0.207 4.207 19 C 0.006 3.994 20 N -0.408 5.408 21 C 0.138 3.862 22 C -0.067 4.067 23 C -0.139 4.139 24 C 0.096 3.904 25 N -0.481 5.481 26 C 0.089 3.911 27 C -0.158 4.158 28 C 0.107 3.893 29 H 0.270 0.730 30 H 0.385 0.615 31 H 0.077 0.923 32 H 0.078 0.922 33 H 0.079 0.921 34 H 0.070 0.930 35 H 0.159 0.841 36 H 0.140 0.860 37 H 0.163 0.837 38 H 0.098 0.902 39 H 0.123 0.877 40 H 0.155 0.845 41 H 0.158 0.842 42 H 0.154 0.846 43 H 0.131 0.869 44 H 0.067 0.933 45 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.067 -14.920 -10.374 18.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.132 4.132 3 Si 0.730 3.270 4 H -0.195 1.195 5 H -0.208 1.208 6 H -0.207 1.207 7 C -0.576 4.576 8 H 0.086 0.914 9 C 0.208 3.792 10 O -0.395 6.395 11 C -0.158 4.158 12 C -0.035 4.035 13 N -0.323 5.323 14 C 0.380 3.620 15 O -0.446 6.446 16 C -0.144 4.144 17 C -0.184 4.184 18 C -0.231 4.231 19 C -0.128 4.128 20 N -0.081 5.081 21 C 0.017 3.983 22 C -0.076 4.076 23 C -0.159 4.159 24 C -0.061 4.061 25 N -0.190 5.190 26 C -0.068 4.068 27 C -0.178 4.178 28 C -0.014 4.014 29 H 0.080 0.920 30 H 0.236 0.764 31 H 0.095 0.905 32 H 0.096 0.904 33 H 0.097 0.903 34 H 0.088 0.912 35 H 0.177 0.823 36 H 0.158 0.842 37 H 0.181 0.819 38 H 0.117 0.883 39 H 0.141 0.859 40 H 0.172 0.828 41 H 0.176 0.824 42 H 0.172 0.828 43 H 0.149 0.851 44 H 0.085 0.915 45 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 0.171 -14.454 -11.562 18.510 hybrid contribution -0.574 0.956 0.414 1.190 sum -0.402 -13.498 -11.148 17.511 Atomic orbital electron populations 1.69648 1.05994 1.27888 1.49895 1.25073 0.95044 0.99787 0.93335 0.86356 0.80117 0.82712 0.77800 1.19545 1.20750 1.20702 1.21565 0.93791 0.90052 1.52156 0.91404 1.19490 0.86139 0.92195 0.81414 1.86090 1.53632 1.52728 1.47007 1.22798 0.97575 0.95013 1.00386 1.22854 0.93652 0.95918 0.91093 1.48421 1.49080 1.12571 1.22267 1.16582 0.79956 0.84651 0.80842 1.90661 1.41520 1.62943 1.49509 1.20246 1.10469 0.94091 0.89614 1.22082 1.03019 0.92384 1.00952 1.20828 1.08049 0.98758 0.95510 1.21912 1.05202 0.85236 1.00456 1.43854 1.44067 1.07667 1.12546 1.20940 0.92972 0.99904 0.84486 1.20364 0.97272 0.94330 0.95587 1.22582 0.97650 0.96124 0.99591 1.22870 0.92606 0.99951 0.90653 1.67661 1.25187 1.05319 1.20875 1.22697 0.94743 0.91636 0.97691 1.22011 0.98373 1.00676 0.96785 1.23053 1.01883 0.77243 0.99229 0.91981 0.76414 0.90476 0.90362 0.90295 0.91233 0.82349 0.84227 0.81917 0.88336 0.85888 0.82768 0.82431 0.82833 0.85087 0.91480 0.91438 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.28 10.97 55.43 0.61 -22.67 16 2 C 0.07 1.80 5.26 -17.82 -0.09 1.71 16 3 Si 0.90 20.09 29.54 -169.99 -5.02 15.07 16 4 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 5 H -0.28 -6.30 7.11 56.52 0.40 -5.89 16 6 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 7 C -0.54 -13.71 8.12 -34.44 -0.28 -13.99 16 8 H 0.07 1.71 7.77 -52.49 -0.41 1.31 16 9 C 0.25 5.83 0.86 -89.94 -0.08 5.75 16 10 O -0.59 -14.39 13.09 -35.23 -0.46 -14.85 16 11 C -0.12 -2.32 6.22 -24.58 -0.15 -2.47 16 12 C 0.09 1.51 5.23 -2.52 -0.01 1.50 16 13 N -0.59 -11.91 3.33 -172.05 -0.57 -12.48 16 14 C 0.59 11.48 7.81 -12.85 -0.10 11.38 16 15 O -0.56 -11.82 12.76 5.20 0.07 -11.75 16 16 C -0.03 -0.51 6.84 -81.98 -0.56 -1.07 16 17 C -0.16 -2.26 9.16 -39.12 -0.36 -2.62 16 18 C -0.21 -2.46 10.81 -39.98 -0.43 -2.89 16 19 C 0.01 0.06 11.37 -16.91 -0.19 -0.13 16 20 N -0.41 -5.50 2.74 -114.15 -0.31 -5.81 16 21 C 0.14 1.64 5.77 -5.19 -0.03 1.61 16 22 C -0.07 -0.83 5.50 -104.32 -0.57 -1.41 16 23 C -0.14 -2.00 9.60 -39.44 -0.38 -2.38 16 24 C 0.10 1.31 11.18 -17.55 -0.20 1.12 16 25 N -0.48 -6.56 10.36 -13.25 -0.14 -6.69 16 26 C 0.09 0.99 11.18 -17.55 -0.20 0.80 16 27 C -0.16 -1.65 9.84 -39.44 -0.39 -2.04 16 28 C 0.11 2.50 5.39 -3.07 -0.02 2.49 16 29 H 0.27 6.74 8.31 -40.82 -0.34 6.40 16 30 H 0.38 9.76 7.18 45.56 0.33 10.09 16 31 H 0.08 1.45 8.04 -51.93 -0.42 1.03 16 32 H 0.08 1.43 8.14 -51.93 -0.42 1.01 16 33 H 0.08 1.17 5.31 -51.93 -0.28 0.90 16 34 H 0.07 1.17 8.01 -51.93 -0.42 0.75 16 35 H 0.16 2.09 4.71 -52.49 -0.25 1.84 16 36 H 0.14 1.30 8.06 -52.49 -0.42 0.88 16 37 H 0.16 1.21 8.06 -52.48 -0.42 0.78 16 38 H 0.10 0.83 8.12 -51.93 -0.42 0.41 16 39 H 0.12 1.72 6.24 -51.93 -0.32 1.40 16 40 H 0.15 2.52 5.90 -52.49 -0.31 2.21 16 41 H 0.16 1.89 8.06 -52.49 -0.42 1.47 16 42 H 0.15 1.23 8.06 -52.48 -0.42 0.81 16 43 H 0.13 0.97 8.06 -52.49 -0.42 0.55 16 44 H 0.07 1.72 8.01 -51.93 -0.42 1.30 16 45 H 0.07 1.71 7.82 -51.93 -0.41 1.30 16 LS Contribution 368.11 15.07 5.55 5.55 Total: -1.00 -29.87 368.11 -9.31 -39.18 By element: Atomic # 1 Polarization: 22.11 SS G_CDS: -4.99 Total: 17.12 kcal Atomic # 6 Polarization: 1.40 SS G_CDS: -4.04 Total: -2.64 kcal Atomic # 7 Polarization: -47.25 SS G_CDS: -0.41 Total: -47.66 kcal Atomic # 8 Polarization: -26.21 SS G_CDS: -0.39 Total: -26.61 kcal Atomic # 14 Polarization: 20.09 SS G_CDS: -5.02 Total: 15.07 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -29.87 -9.31 -39.18 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000844016375.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.314 kcal (2) G-P(sol) polarization free energy of solvation -29.869 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.179 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.135 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds