Wall clock time and date at job start Sat Apr 11 2020 06:18:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86796 * 120.00249 * 2 1 4 4 H 1.48503 * 109.47273 * 240.00322 * 3 2 1 5 5 H 1.48508 * 109.47035 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47408 * 119.99829 * 3 2 1 7 7 C 1.37884 * 119.99975 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99752 * 180.02562 * 7 2 1 9 9 C 1.50696 * 119.99745 * 359.97438 * 7 2 1 10 10 O 1.42892 * 110.64241 * 56.86204 * 9 7 2 11 11 C 1.55162 * 110.71601 * 180.02562 * 9 7 2 12 12 C 1.54913 * 101.57823 * 154.04533 * 11 9 7 13 13 N 1.47422 * 104.83356 * 322.98655 * 12 11 9 14 14 C 1.34775 * 125.64823 * 204.09650 * 13 12 11 15 15 O 1.21701 * 119.99734 * 174.90343 * 14 13 12 16 16 C 1.46673 * 120.00258 * 354.90371 * 14 13 12 17 17 C 1.37869 * 126.23306 * 353.25866 * 16 14 13 18 18 C 1.39836 * 107.08677 * 180.23960 * 17 16 14 19 19 C 1.35454 * 107.86391 * 359.75971 * 18 17 16 20 20 N 1.35537 * 108.87281 * 0.02562 * 19 18 17 21 21 C 1.46492 * 125.67790 * 179.97438 * 20 19 18 22 22 C 1.50695 * 109.47454 * 269.30788 * 21 20 19 23 23 C 1.38652 * 120.79281 * 263.42984 * 22 21 20 24 24 C 1.38207 * 119.16217 * 179.97438 * 23 22 21 25 25 N 1.31864 * 120.76684 * 0.02562 * 24 23 22 26 26 C 1.31871 * 121.72653 * 0.02562 * 25 24 23 27 27 C 1.38204 * 120.76369 * 359.97303 * 26 25 24 28 28 C 1.47024 * 108.70151 * 24.35982 * 13 12 11 29 29 H 0.96994 * 120.00044 * 0.02562 * 1 2 3 30 30 H 0.96703 * 114.00318 * 303.13555 * 10 9 7 31 31 H 1.09000 * 111.00592 * 35.97003 * 11 9 7 32 32 H 1.08996 * 111.00362 * 272.11359 * 11 9 7 33 33 H 1.09009 * 110.36512 * 204.15156 * 12 11 9 34 34 H 1.08990 * 110.46447 * 81.87443 * 12 11 9 35 35 H 1.08000 * 126.45823 * 359.97438 * 17 16 14 36 36 H 1.08001 * 126.07098 * 179.73928 * 18 17 16 37 37 H 1.07999 * 125.56597 * 179.97438 * 19 18 17 38 38 H 1.09003 * 109.47130 * 149.30835 * 21 20 19 39 39 H 1.08994 * 109.47441 * 29.31326 * 21 20 19 40 40 H 1.07995 * 120.41565 * 0.04048 * 23 22 21 41 41 H 1.08001 * 119.61256 * 180.30190 * 24 23 22 42 42 H 1.07996 * 119.61962 * 179.97438 * 26 25 24 43 43 H 1.08008 * 120.42049 * 180.02562 * 27 26 25 44 44 H 1.09003 * 109.88317 * 118.13056 * 28 13 12 45 45 H 1.09000 * 109.88031 * 239.29662 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2126 5 1 1.2841 2.7465 -0.0006 6 1 3.1029 1.6964 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0017 10 8 0.3656 -2.5706 -1.1176 11 6 2.2334 -3.7002 0.0028 12 6 1.3740 -4.8042 0.6680 13 7 0.5905 -4.1018 1.7005 14 6 0.0656 -4.6649 2.8067 15 8 -0.4860 -3.9701 3.6399 16 6 0.1590 -6.1149 3.0064 17 6 0.6344 -7.0341 2.0954 18 6 0.5387 -8.2939 2.6947 19 6 0.0230 -8.1255 3.9359 20 7 -0.2096 -6.8057 4.1386 21 6 -0.7657 -6.2136 5.3577 22 6 -2.2668 -6.1454 5.2435 23 6 -2.8950 -4.9806 4.8300 24 6 -4.2737 -4.9556 4.7366 25 7 -4.9895 -6.0219 5.0359 26 6 -4.4262 -7.1460 5.4334 27 6 -3.0527 -7.2457 5.5505 28 6 0.4713 -2.6865 1.3204 29 1 -0.4850 0.8400 -0.0004 30 1 -0.2691 -1.8425 -1.1643 31 1 3.1182 -3.4807 0.6003 32 1 2.5098 -3.9797 -1.0138 33 1 2.0138 -5.5590 1.1253 34 1 0.7105 -5.2637 -0.0645 35 1 1.0063 -6.8217 1.1040 36 1 0.8249 -9.2343 2.2473 37 1 -0.1719 -8.9142 4.6474 38 1 -0.3653 -5.2083 5.4887 39 1 -0.4942 -6.8275 6.2164 40 1 -2.3142 -4.1043 4.5829 41 1 -4.7703 -4.0536 4.4106 42 1 -5.0453 -7.9986 5.6703 43 1 -2.5972 -8.1693 5.8762 44 1 -0.5777 -2.4294 1.1728 45 1 0.9039 -2.0563 2.0974 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000844016376.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:17 Heat of formation + Delta-G solvation = 18.236177 kcal Electronic energy + Delta-G solvation = -29944.410380 eV Core-core repulsion = 25928.288816 eV Total energy + Delta-G solvation = -4016.121564 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.48026 -40.04617 -39.02622 -37.12407 -34.89854 -34.17925 -32.19995 -31.30097 -31.27442 -30.39771 -29.29192 -27.67510 -26.67638 -25.20934 -23.54853 -23.39025 -22.34084 -21.01551 -20.58692 -19.55697 -19.00685 -17.24094 -17.13387 -16.74748 -16.39021 -15.89932 -15.64605 -15.52168 -15.14911 -14.74505 -14.45993 -14.08201 -13.96453 -13.85440 -13.44047 -13.18534 -13.11098 -12.91579 -12.88629 -12.52068 -12.35292 -12.15867 -12.07313 -11.53810 -11.45322 -11.42512 -11.05557 -10.72060 -10.65969 -10.55439 -10.19358 -9.88158 -9.66567 -9.47534 -9.35741 -9.20453 -8.73027 -8.69347 -8.36428 -8.23227 -7.87793 -6.33184 -4.41831 0.97334 1.09643 1.66273 2.75388 2.81756 3.19950 3.25742 3.27635 3.61772 3.68932 3.84321 4.23675 4.36483 4.41550 4.43959 4.82778 4.89333 4.94477 4.97637 5.00605 5.13355 5.33709 5.36829 5.45083 5.50138 5.55925 5.71631 5.77827 5.81798 5.89252 6.00763 6.01632 6.14358 6.23272 6.29657 6.45728 6.62774 6.71397 6.79696 6.80521 6.95878 7.03738 7.20269 7.23650 7.32797 7.69629 7.87296 7.95411 8.12241 8.59491 8.65533 9.27269 9.40113 10.74541 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.013917 B = 0.003315 C = 0.002888 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2011.493414 B = 8444.659833 C = 9692.715161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.071 3.929 3 Si 0.904 3.096 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.538 4.538 8 H 0.067 0.933 9 C 0.249 3.751 10 O -0.586 6.586 11 C -0.120 4.120 12 C 0.092 3.908 13 N -0.593 5.593 14 C 0.591 3.409 15 O -0.563 6.563 16 C -0.032 4.032 17 C -0.155 4.155 18 C -0.207 4.207 19 C 0.006 3.994 20 N -0.408 5.408 21 C 0.142 3.858 22 C -0.068 4.068 23 C -0.136 4.136 24 C 0.093 3.907 25 N -0.482 5.482 26 C 0.087 3.913 27 C -0.158 4.158 28 C 0.105 3.895 29 H 0.272 0.728 30 H 0.386 0.614 31 H 0.077 0.923 32 H 0.078 0.922 33 H 0.075 0.925 34 H 0.069 0.931 35 H 0.157 0.843 36 H 0.140 0.860 37 H 0.163 0.837 38 H 0.119 0.881 39 H 0.098 0.902 40 H 0.161 0.839 41 H 0.158 0.842 42 H 0.154 0.846 43 H 0.130 0.870 44 H 0.065 0.935 45 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.733 -15.491 9.270 18.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.132 4.132 3 Si 0.732 3.268 4 H -0.199 1.199 5 H -0.210 1.210 6 H -0.200 1.200 7 C -0.576 4.576 8 H 0.085 0.915 9 C 0.209 3.791 10 O -0.396 6.396 11 C -0.158 4.158 12 C -0.031 4.031 13 N -0.324 5.324 14 C 0.380 3.620 15 O -0.446 6.446 16 C -0.145 4.145 17 C -0.181 4.181 18 C -0.231 4.231 19 C -0.128 4.128 20 N -0.082 5.082 21 C 0.021 3.979 22 C -0.077 4.077 23 C -0.156 4.156 24 C -0.064 4.064 25 N -0.191 5.191 26 C -0.070 4.070 27 C -0.178 4.178 28 C -0.016 4.016 29 H 0.082 0.918 30 H 0.238 0.762 31 H 0.095 0.905 32 H 0.097 0.903 33 H 0.093 0.907 34 H 0.087 0.913 35 H 0.174 0.826 36 H 0.158 0.842 37 H 0.181 0.819 38 H 0.137 0.863 39 H 0.116 0.884 40 H 0.179 0.821 41 H 0.175 0.825 42 H 0.171 0.829 43 H 0.148 0.852 44 H 0.083 0.917 45 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -2.913 -15.321 9.880 18.462 hybrid contribution 0.945 1.221 0.216 1.559 sum -1.968 -14.100 10.096 17.453 Atomic orbital electron populations 1.69558 1.06024 1.28137 1.49834 1.25070 0.95049 0.99787 0.93290 0.86446 0.79547 0.82005 0.78844 1.19948 1.21044 1.20017 1.21495 0.93715 0.90103 1.52318 0.91500 1.19475 0.85851 0.92154 0.81655 1.86079 1.51378 1.53399 1.48751 1.22802 0.97702 0.94871 1.00391 1.22750 0.94096 0.95999 0.90208 1.48399 1.51173 1.12268 1.20560 1.16583 0.79164 0.84880 0.81349 1.90612 1.46458 1.64056 1.43470 1.20255 1.11938 0.93036 0.89261 1.21988 1.03960 0.92089 1.00066 1.20826 1.08960 0.98173 0.95185 1.21906 1.06580 0.84676 0.99607 1.43868 1.46244 1.06183 1.11884 1.20866 0.89499 1.02421 0.85113 1.20340 0.95306 0.94158 0.97848 1.22713 0.96253 1.00039 0.96579 1.22874 0.91197 0.96677 0.95629 1.67650 1.41344 0.99895 1.10195 1.22674 0.92360 0.95799 0.96140 1.22005 0.95386 0.98759 1.01700 1.23094 1.01694 0.77125 0.99675 0.91817 0.76179 0.90475 0.90335 0.90673 0.91308 0.82616 0.84227 0.81925 0.86333 0.88397 0.82141 0.82508 0.82901 0.85169 0.91653 0.91389 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.29 10.97 55.43 0.61 -22.68 16 2 C 0.07 1.81 5.28 -17.82 -0.09 1.72 16 3 Si 0.90 20.06 29.54 -169.99 -5.02 15.04 16 4 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 5 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 6 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 7 C -0.54 -13.71 8.12 -34.44 -0.28 -13.99 16 8 H 0.07 1.67 7.76 -52.48 -0.41 1.26 16 9 C 0.25 5.85 0.86 -89.93 -0.08 5.77 16 10 O -0.59 -14.48 13.07 -35.23 -0.46 -14.94 16 11 C -0.12 -2.31 6.23 -24.58 -0.15 -2.46 16 12 C 0.09 1.59 5.09 -2.53 -0.01 1.57 16 13 N -0.59 -11.85 3.33 -172.05 -0.57 -12.42 16 14 C 0.59 11.40 7.80 -12.86 -0.10 11.30 16 15 O -0.56 -11.63 12.22 5.19 0.06 -11.56 16 16 C -0.03 -0.52 6.83 -81.98 -0.56 -1.08 16 17 C -0.16 -2.21 9.15 -39.12 -0.36 -2.57 16 18 C -0.21 -2.46 10.81 -39.98 -0.43 -2.89 16 19 C 0.01 0.07 11.38 -16.91 -0.19 -0.12 16 20 N -0.41 -5.47 2.74 -114.16 -0.31 -5.79 16 21 C 0.14 1.68 5.69 -5.20 -0.03 1.65 16 22 C -0.07 -0.85 5.50 -104.32 -0.57 -1.43 16 23 C -0.14 -1.96 9.36 -39.44 -0.37 -2.33 16 24 C 0.09 1.28 11.18 -17.55 -0.20 1.08 16 25 N -0.48 -6.62 10.36 -13.25 -0.14 -6.75 16 26 C 0.09 0.98 11.18 -17.55 -0.20 0.79 16 27 C -0.16 -1.67 9.84 -39.44 -0.39 -2.06 16 28 C 0.11 2.45 5.55 -3.06 -0.02 2.44 16 29 H 0.27 6.80 8.31 -40.82 -0.34 6.47 16 30 H 0.39 9.88 6.98 45.56 0.32 10.19 16 31 H 0.08 1.43 8.03 -51.93 -0.42 1.01 16 32 H 0.08 1.43 8.14 -51.93 -0.42 1.01 16 33 H 0.08 1.10 5.86 -51.92 -0.30 0.79 16 34 H 0.07 1.16 7.75 -51.93 -0.40 0.76 16 35 H 0.16 2.07 4.76 -52.49 -0.25 1.82 16 36 H 0.14 1.31 8.06 -52.49 -0.42 0.89 16 37 H 0.16 1.21 8.06 -52.49 -0.42 0.78 16 38 H 0.12 1.62 6.46 -51.93 -0.34 1.28 16 39 H 0.10 0.82 8.13 -51.93 -0.42 0.39 16 40 H 0.16 2.63 5.49 -52.49 -0.29 2.35 16 41 H 0.16 1.88 8.06 -52.49 -0.42 1.46 16 42 H 0.15 1.25 8.06 -52.49 -0.42 0.83 16 43 H 0.13 0.98 8.06 -52.48 -0.42 0.56 16 44 H 0.07 1.66 8.07 -51.93 -0.42 1.24 16 45 H 0.07 1.72 7.82 -51.93 -0.41 1.31 16 LS Contribution 367.25 15.07 5.53 5.53 Total: -1.00 -29.68 367.25 -9.33 -39.02 By element: Atomic # 1 Polarization: 22.18 SS G_CDS: -5.01 Total: 17.17 kcal Atomic # 6 Polarization: 1.42 SS G_CDS: -4.03 Total: -2.61 kcal Atomic # 7 Polarization: -47.23 SS G_CDS: -0.41 Total: -47.64 kcal Atomic # 8 Polarization: -26.11 SS G_CDS: -0.40 Total: -26.51 kcal Atomic # 14 Polarization: 20.06 SS G_CDS: -5.02 Total: 15.04 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -29.68 -9.33 -39.02 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000844016376.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.253 kcal (2) G-P(sol) polarization free energy of solvation -29.684 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.333 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.017 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.236 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds