Wall clock time and date at job start Sat Apr 11 2020 06:18:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31558 * 1 3 3 Si 1.86800 * 120.00191 * 2 1 4 4 H 1.48501 * 109.47073 * 269.99767 * 3 2 1 5 5 H 1.48500 * 109.47164 * 29.99812 * 3 2 1 6 6 H 1.48506 * 109.47262 * 149.99399 * 3 2 1 7 7 C 1.38648 * 120.00146 * 179.97438 * 2 1 3 8 8 H 1.08010 * 119.99730 * 0.02562 * 7 2 1 9 9 O 1.34825 * 120.00876 * 180.02562 * 7 2 1 10 10 C 1.35747 * 117.00679 * 185.05972 * 9 7 2 11 11 C 1.38874 * 120.06871 * 354.46360 * 10 9 7 12 12 C 1.38095 * 119.93185 * 179.97438 * 11 10 9 13 13 C 1.38304 * 120.07045 * 359.97438 * 12 11 10 14 14 C 1.50702 * 119.92939 * 180.02562 * 13 12 11 15 15 N 1.46496 * 109.47027 * 90.00309 * 14 13 12 16 16 C 1.34771 * 120.00060 * 179.71968 * 15 14 13 17 17 O 1.21280 * 119.99930 * 0.27677 * 16 15 14 18 18 C 1.50700 * 120.00398 * 180.27508 * 16 15 14 19 19 H 1.09003 * 109.43065 * 299.90413 * 18 16 15 20 20 C 1.53120 * 109.43509 * 180.02562 * 18 16 15 21 21 C 1.53491 * 109.31275 * 170.02018 * 20 18 16 22 22 C 1.50708 * 108.06022 * 48.69008 * 21 20 18 23 23 C 1.33860 * 128.68358 * 164.26040 * 22 21 20 24 24 N 1.34431 * 107.80220 * 180.08805 * 23 22 21 25 25 C 1.30784 * 109.31974 * 359.97438 * 24 23 22 26 26 N 1.34411 * 108.55032 * 359.93887 * 25 24 23 27 27 C 1.46478 * 128.43857 * 180.18545 * 26 25 24 28 28 C 1.38302 * 120.13468 * 0.28097 * 13 12 11 29 29 C 1.38093 * 120.06728 * 359.48790 * 28 13 12 30 30 H 0.97005 * 119.99809 * 0.02562 * 1 2 3 31 31 H 1.07998 * 120.03469 * 359.95415 * 11 10 9 32 32 H 1.08003 * 119.96837 * 180.02562 * 12 11 10 33 33 H 1.08991 * 109.47288 * 329.99864 * 14 13 12 34 34 H 1.09002 * 109.46580 * 210.00141 * 14 13 12 35 35 H 0.97008 * 120.00436 * 359.97438 * 15 14 13 36 36 H 1.09003 * 109.49186 * 289.96825 * 20 18 16 37 37 H 1.08999 * 109.49831 * 50.03328 * 20 18 16 38 38 H 1.08991 * 109.74651 * 168.33568 * 21 20 18 39 39 H 1.09005 * 109.74332 * 289.05394 * 21 20 18 40 40 H 1.08007 * 126.09914 * 0.05222 * 23 22 21 41 41 H 1.07999 * 125.72146 * 179.90682 * 25 24 23 42 42 H 1.08998 * 109.59712 * 42.88365 * 27 26 25 43 43 H 1.08994 * 109.60179 * 282.40544 * 27 26 25 44 44 H 1.07998 * 119.96040 * 179.72281 * 28 13 12 45 45 H 1.08006 * 120.03277 * 180.25779 * 29 28 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 2.4972 2.0463 -1.4001 5 1 1.4471 2.6527 0.7000 6 1 3.5472 1.4402 0.7002 7 6 2.0088 -1.2007 0.0005 8 1 1.4688 -2.1361 0.0005 9 8 3.3571 -1.2009 0.0011 10 6 3.9734 -2.4057 -0.1051 11 6 3.2234 -3.5745 -0.0922 12 6 3.8533 -4.7986 -0.2009 13 6 5.2295 -4.8614 -0.3231 14 6 5.9135 -6.1990 -0.4421 15 7 6.0160 -6.5710 -1.8553 16 6 6.6012 -7.7334 -2.2054 17 8 7.0385 -8.4739 -1.3502 18 6 6.7122 -8.1133 -3.6595 19 1 5.7147 -8.1803 -4.0940 20 6 7.4117 -9.4700 -3.7797 21 6 7.3028 -9.9710 -5.2265 22 6 7.7115 -8.8461 -6.1424 23 6 8.0432 -8.9007 -7.4381 24 7 8.3376 -7.6521 -7.8400 25 6 8.1974 -6.8292 -6.8332 26 7 7.8066 -7.5330 -5.7568 27 6 7.5205 -7.0462 -4.4053 28 6 5.9796 -3.6995 -0.3309 29 6 5.3552 -2.4722 -0.2274 30 1 -0.4850 0.8401 -0.0004 31 1 2.1487 -3.5261 0.0031 32 1 3.2705 -5.7079 -0.1914 33 1 5.3335 -6.9523 0.0908 34 1 6.9120 -6.1361 -0.0096 35 1 5.6659 -5.9789 -2.5394 36 1 8.4624 -9.3627 -3.5100 37 1 6.9354 -10.1856 -3.1096 38 1 7.9659 -10.8236 -5.3719 39 1 6.2743 -10.2632 -5.4385 40 1 8.0702 -9.7895 -8.0512 41 1 8.3675 -5.7631 -6.8618 42 1 6.9432 -6.1234 -4.4636 43 1 8.4560 -6.8622 -3.8772 44 1 7.0544 -3.7521 -0.4220 45 1 5.9412 -1.5650 -0.2378 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000844133349.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:21 Heat of formation + Delta-G solvation = -0.547314 kcal Electronic energy + Delta-G solvation = -28018.250962 eV Core-core repulsion = 24001.314884 eV Total energy + Delta-G solvation = -4016.936078 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -43.29612 -41.19890 -40.74744 -38.67897 -37.24056 -35.77208 -34.46215 -33.94313 -32.26922 -31.85702 -31.10813 -28.85919 -27.75649 -26.36745 -25.48653 -23.73967 -23.57452 -22.38299 -22.07262 -21.44799 -20.09116 -19.83881 -19.15925 -18.48220 -17.97723 -17.01250 -16.84698 -16.68298 -16.39308 -16.01729 -15.75162 -15.65854 -15.25064 -15.17657 -15.00779 -14.89744 -14.73892 -14.58227 -14.36029 -14.22990 -14.07683 -14.01482 -13.37788 -13.12566 -12.94894 -12.73602 -12.60284 -12.47734 -12.35219 -12.13694 -11.96536 -11.94461 -11.31150 -11.12607 -10.92453 -10.83089 -10.50039 -10.12273 -9.84045 -9.27382 -9.10181 -8.51872 -6.24924 0.48010 0.54221 1.11987 1.32110 1.34902 1.45281 1.51404 1.82898 2.18184 2.22048 2.26414 2.77673 3.04488 3.13455 3.29251 3.53811 3.56744 3.77289 3.84032 3.95330 4.00842 4.12945 4.13683 4.16775 4.26441 4.38599 4.43148 4.46717 4.53832 4.63628 4.73238 4.80382 4.82747 4.93854 4.95849 5.06903 5.17094 5.21629 5.32993 5.37012 5.42620 5.53262 5.69963 5.78171 5.81018 5.87785 6.18652 6.28156 6.49717 6.82421 7.12642 7.15290 7.55560 8.59309 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.015489 B = 0.002069 C = 0.001928 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1807.328939 B =13527.224290 C =14518.389935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C 0.010 3.990 3 Si 0.970 3.030 4 H -0.265 1.265 5 H -0.270 1.270 6 H -0.261 1.261 7 C -0.399 4.399 8 H 0.083 0.917 9 O -0.242 6.242 10 C 0.128 3.872 11 C -0.240 4.240 12 C -0.050 4.050 13 C -0.174 4.174 14 C 0.182 3.818 15 N -0.712 5.712 16 C 0.525 3.475 17 O -0.570 6.570 18 C -0.112 4.112 19 H 0.122 0.878 20 C -0.101 4.101 21 C -0.040 4.040 22 C -0.026 4.026 23 C -0.051 4.051 24 N -0.538 5.538 25 C 0.181 3.819 26 N -0.455 5.455 27 C 0.114 3.886 28 C -0.043 4.043 29 C -0.192 4.192 30 H 0.285 0.715 31 H 0.107 0.893 32 H 0.134 0.866 33 H 0.069 0.931 34 H 0.080 0.920 35 H 0.412 0.588 36 H 0.063 0.937 37 H 0.085 0.915 38 H 0.104 0.896 39 H 0.097 0.903 40 H 0.178 0.822 41 H 0.232 0.768 42 H 0.122 0.878 43 H 0.096 0.904 44 H 0.157 0.843 45 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.640 -16.888 -8.881 25.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.189 4.189 3 Si 0.792 3.208 4 H -0.190 1.190 5 H -0.195 1.195 6 H -0.186 1.186 7 C -0.475 4.475 8 H 0.100 0.900 9 O -0.150 6.150 10 C 0.078 3.922 11 C -0.259 4.259 12 C -0.069 4.069 13 C -0.175 4.175 14 C 0.059 3.941 15 N -0.364 5.364 16 C 0.311 3.689 17 O -0.449 6.449 18 C -0.134 4.134 19 H 0.139 0.861 20 C -0.140 4.140 21 C -0.078 4.078 22 C -0.141 4.141 23 C -0.197 4.197 24 N -0.257 5.257 25 C -0.101 4.101 26 N -0.139 5.139 27 C -0.008 4.008 28 C -0.062 4.062 29 C -0.211 4.211 30 H 0.094 0.906 31 H 0.125 0.875 32 H 0.151 0.849 33 H 0.087 0.913 34 H 0.098 0.902 35 H 0.249 0.751 36 H 0.082 0.918 37 H 0.103 0.897 38 H 0.122 0.878 39 H 0.115 0.885 40 H 0.196 0.804 41 H 0.248 0.752 42 H 0.140 0.860 43 H 0.114 0.886 44 H 0.174 0.826 45 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 17.058 -16.764 -8.883 25.513 hybrid contribution -1.042 0.958 0.614 1.543 sum 16.015 -15.806 -8.269 23.973 Atomic orbital electron populations 1.69729 1.06950 1.29647 1.49878 1.25288 0.95862 1.02217 0.95508 0.85224 0.78825 0.77426 0.79311 1.18985 1.19510 1.18567 1.20695 0.78048 0.96108 1.52642 0.89958 1.83520 1.21262 1.27636 1.82539 1.19774 0.93355 0.85018 0.94015 1.21270 1.00279 0.93168 1.11178 1.20929 0.94527 0.96107 0.95337 1.19539 0.92872 0.94734 1.10319 1.19935 1.00343 0.91790 0.82029 1.46207 1.59737 1.21256 1.09175 1.20469 0.76959 0.80755 0.90700 1.90727 1.49396 1.51946 1.52861 1.21577 1.03039 0.97116 0.91642 0.86056 1.21450 1.01023 0.94696 0.96796 1.20315 1.03434 0.93756 0.90277 1.21530 1.09500 0.86374 0.96679 1.22164 1.07680 0.96143 0.93694 1.70476 1.22605 1.02247 1.30356 1.25391 1.02903 1.00495 0.81294 1.45475 1.50249 1.07444 1.10705 1.22015 1.01890 0.97769 0.79164 1.20960 1.00410 0.89715 0.95071 1.20536 0.90390 0.99959 1.10264 0.90560 0.87486 0.84865 0.91281 0.90152 0.75124 0.91773 0.89684 0.87750 0.88518 0.80433 0.75209 0.86044 0.88587 0.82576 0.85192 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.43 13.96 21.61 0.30 -53.13 16 2 C 0.01 0.56 5.49 84.83 0.47 1.02 16 3 Si 0.97 43.57 28.62 68.60 1.96 45.53 16 4 H -0.26 -11.41 7.11 99.48 0.71 -10.70 16 5 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 6 H -0.26 -11.65 7.11 99.48 0.71 -10.95 16 7 C -0.40 -22.38 9.95 67.92 0.68 -21.70 16 8 H 0.08 4.84 5.44 -2.91 -0.02 4.82 16 9 O -0.24 -12.33 8.59 -22.66 -0.19 -12.53 16 10 C 0.13 5.39 6.65 22.58 0.15 5.54 16 11 C -0.24 -9.40 9.17 22.39 0.21 -9.19 16 12 C -0.05 -1.46 9.69 22.25 0.22 -1.24 16 13 C -0.17 -4.04 5.25 -19.83 -0.10 -4.14 16 14 C 0.18 3.32 5.80 85.63 0.50 3.82 16 15 N -0.71 -10.26 5.45 -466.81 -2.54 -12.80 16 16 C 0.53 8.39 7.14 87.66 0.63 9.02 16 17 O -0.57 -13.72 15.81 -3.03 -0.05 -13.77 16 18 C -0.11 -1.21 2.52 -11.42 -0.03 -1.24 16 19 H 0.12 1.08 8.11 -2.39 -0.02 1.06 16 20 C -0.10 -1.20 4.69 30.80 0.14 -1.06 16 21 C -0.04 -0.40 6.31 30.02 0.19 -0.21 16 22 C -0.03 -0.40 6.57 40.73 0.27 -0.13 16 23 C -0.05 -0.95 11.84 83.30 0.99 0.03 16 24 N -0.54 -11.97 11.27 -200.96 -2.26 -14.23 16 25 C 0.18 2.95 12.66 180.38 2.28 5.23 16 26 N -0.46 -6.34 3.13 -514.93 -1.61 -7.96 16 27 C 0.11 1.03 6.12 86.46 0.53 1.56 16 28 C -0.04 -1.03 9.69 22.25 0.22 -0.82 16 29 C -0.19 -6.26 9.99 22.39 0.22 -6.03 16 30 H 0.28 15.16 8.31 -92.70 -0.77 14.39 16 31 H 0.11 4.76 5.64 -2.91 -0.02 4.75 16 32 H 0.13 3.26 8.06 -2.91 -0.02 3.24 16 33 H 0.07 1.36 8.08 -2.39 -0.02 1.34 16 34 H 0.08 1.41 8.08 -2.39 -0.02 1.39 16 35 H 0.41 4.57 8.08 -92.70 -0.75 3.82 16 36 H 0.06 0.90 8.12 -2.39 -0.02 0.88 16 37 H 0.08 1.11 7.77 -2.39 -0.02 1.09 16 38 H 0.10 0.80 8.14 -2.39 -0.02 0.78 16 39 H 0.10 0.76 8.14 -2.38 -0.02 0.74 16 40 H 0.18 2.65 8.06 -2.91 -0.02 2.62 16 41 H 0.23 2.11 8.06 -2.91 -0.02 2.08 16 42 H 0.12 0.60 7.84 -2.39 -0.02 0.58 16 43 H 0.10 0.84 8.12 -2.39 -0.02 0.82 16 44 H 0.16 2.57 8.06 -2.91 -0.02 2.54 16 45 H 0.13 3.92 8.06 -2.91 -0.02 3.89 16 Total: -1.00 -73.38 377.85 3.42 -69.96 By element: Atomic # 1 Polarization: 18.17 SS G_CDS: 0.28 Total: 18.45 kcal Atomic # 6 Polarization: -27.07 SS G_CDS: 7.54 Total: -19.53 kcal Atomic # 7 Polarization: -82.00 SS G_CDS: -6.12 Total: -88.12 kcal Atomic # 8 Polarization: -26.05 SS G_CDS: -0.24 Total: -26.29 kcal Atomic # 14 Polarization: 43.57 SS G_CDS: 1.96 Total: 45.53 kcal Total: -73.38 3.42 -69.96 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000844133349.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.411 kcal (2) G-P(sol) polarization free energy of solvation -73.381 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.969 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.422 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.959 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.547 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds