Wall clock time and date at job start Sat Apr 11 2020 06:18:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86800 * 119.99663 * 2 1 4 4 H 1.48503 * 109.47142 * 239.99837 * 3 2 1 5 5 H 1.48498 * 109.47084 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47267 * 119.99771 * 3 2 1 7 7 C 1.38806 * 120.00191 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00123 * 163.08901 * 7 2 1 9 9 N 1.36934 * 120.00015 * 343.08772 * 7 2 1 10 10 C 1.46928 * 120.63265 * 331.83027 * 9 7 2 11 11 C 1.53201 * 108.89275 * 233.51651 * 10 9 7 12 12 C 1.53071 * 109.29371 * 305.57634 * 11 10 9 13 13 O 1.45201 * 109.45280 * 181.24320 * 12 11 10 14 14 C 1.34800 * 116.99605 * 89.78576 * 13 12 11 15 15 O 1.21547 * 120.00177 * 0.02562 * 14 13 12 16 16 C 1.47165 * 119.99506 * 180.02562 * 14 13 12 17 17 C 1.36526 * 126.19664 * 180.02562 * 16 14 13 18 18 N 1.36085 * 106.75991 * 179.97438 * 17 16 14 19 19 C 1.40208 * 126.21127 * 179.97438 * 18 17 16 20 20 C 1.38826 * 120.06622 * 359.72897 * 19 18 17 21 21 C 1.38121 * 119.93490 * 179.75975 * 20 19 18 22 22 C 1.38278 * 120.06430 * 0.49005 * 21 20 19 23 23 C 1.38278 * 120.13474 * 359.76441 * 22 21 20 24 24 C 1.38127 * 120.06081 * 359.97438 * 23 22 21 25 25 C 1.36131 * 107.57757 * 359.97438 * 18 17 16 26 26 N 1.30131 * 109.02499 * 359.74697 * 25 18 17 27 27 C 1.53045 * 109.66047 * 61.15498 * 12 11 10 28 28 C 1.46932 * 120.63392 * 151.80754 * 9 7 2 29 29 H 0.96995 * 120.00379 * 0.02562 * 1 2 3 30 30 H 1.09000 * 109.58613 * 353.36947 * 10 9 7 31 31 H 1.08995 * 109.59058 * 113.65812 * 10 9 7 32 32 H 1.09002 * 109.49837 * 65.38934 * 11 10 9 33 33 H 1.09003 * 109.49550 * 185.48233 * 11 10 9 34 34 H 1.09001 * 109.33784 * 301.13345 * 12 11 10 35 35 H 1.07997 * 126.62098 * 359.97438 * 17 16 14 36 36 H 1.07996 * 120.03231 * 359.97438 * 20 19 18 37 37 H 1.08000 * 119.97106 * 180.25201 * 21 20 19 38 38 H 1.08000 * 119.93599 * 179.74077 * 22 21 20 39 39 H 1.07998 * 119.97289 * 179.97438 * 23 22 21 40 40 H 1.08004 * 120.03163 * 179.97438 * 24 23 22 41 41 H 1.08001 * 125.48787 * 180.02562 * 25 18 17 42 42 H 1.09002 * 109.49555 * 178.74703 * 27 12 11 43 43 H 1.08999 * 109.49562 * 58.65207 * 27 12 11 44 44 H 1.08996 * 109.59017 * 246.20330 * 28 9 7 45 45 H 1.09009 * 109.58200 * 6.48305 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2851 2.7464 -0.0006 6 1 3.1039 1.6966 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0553 -1.2224 -0.2715 9 7 1.3701 -2.3622 0.3460 10 6 0.2261 -2.3400 1.2678 11 6 0.4939 -3.3200 2.4145 12 6 0.8120 -4.7009 1.8358 13 8 1.0376 -5.6395 2.9204 14 6 -0.0379 -6.3043 3.3880 15 8 -1.1340 -6.1052 2.9020 16 6 0.1153 -7.2712 4.4869 17 6 -0.8818 -8.0108 5.0549 18 7 -0.3037 -8.7680 6.0267 19 6 -0.9596 -9.6790 6.8668 20 6 -2.3298 -9.8697 6.7511 21 6 -2.9723 -10.7715 7.5768 22 6 -2.2538 -11.4765 8.5248 23 6 -0.8897 -11.2848 8.6460 24 6 -0.2408 -10.3883 7.8195 25 6 1.0268 -8.4804 6.0351 26 7 1.2751 -7.5944 5.1149 27 6 2.0674 -4.6174 0.9645 28 6 1.8137 -3.6528 -0.1983 29 1 -0.4850 0.8400 -0.0004 30 1 0.0993 -1.3344 1.6687 31 1 -0.6775 -2.6380 0.7360 32 1 1.3427 -2.9695 3.0019 33 1 -0.3882 -3.3843 3.0516 34 1 -0.0283 -5.0408 1.2304 35 1 -1.9274 -7.9975 4.7851 36 1 -2.8922 -9.3161 6.0139 37 1 -4.0376 -10.9233 7.4845 38 1 -2.7589 -12.1780 9.1722 39 1 -0.3311 -11.8365 9.3876 40 1 0.8245 -10.2387 7.9149 41 1 1.7592 -8.9204 6.6957 42 1 2.3041 -5.6063 0.5718 43 1 2.9024 -4.2538 1.5634 44 1 1.0401 -4.0603 -0.8491 45 1 2.7332 -3.5129 -0.7669 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000845497699.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:24 Heat of formation + Delta-G solvation = 31.792379 kcal Electronic energy + Delta-G solvation = -28161.124037 eV Core-core repulsion = 24145.590314 eV Total energy + Delta-G solvation = -4015.533723 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.85285 -40.05536 -39.51133 -37.32473 -35.65515 -34.67885 -32.61762 -31.92123 -30.38132 -30.25883 -29.87094 -29.50579 -25.62554 -24.49609 -24.03419 -22.79940 -22.16064 -21.68728 -21.30645 -20.07630 -19.30484 -19.04612 -17.26086 -16.94353 -16.61789 -16.25291 -16.12297 -15.46817 -15.32301 -15.18405 -14.75612 -14.62873 -14.19010 -13.97099 -13.87836 -13.53251 -13.44172 -13.21110 -12.78738 -12.66643 -12.41070 -12.34732 -11.78237 -11.45904 -11.23989 -11.09880 -11.07310 -10.68689 -10.67825 -10.59354 -10.38719 -10.24135 -10.14566 -9.84568 -9.71519 -9.61449 -9.33476 -9.27089 -8.84056 -8.42802 -6.66678 -5.75837 -3.18759 0.21195 0.63711 1.40386 1.99589 2.10364 2.99034 3.12982 3.29907 3.42243 3.47615 3.49388 3.95990 4.08394 4.14991 4.28967 4.47547 4.52871 4.59029 4.67930 4.84096 5.02096 5.08513 5.22569 5.29833 5.33894 5.43812 5.53351 5.60869 5.66868 5.76466 5.81092 5.82834 5.97351 6.10198 6.13273 6.29809 6.37840 6.55162 6.59534 6.67908 6.68775 6.77830 6.93238 7.02470 7.37534 7.38602 7.67838 7.82809 8.10394 8.47782 9.23399 9.86467 10.43345 11.33136 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.030998 B = 0.001851 C = 0.001828 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 903.056877 B =15120.899483 C =15311.792317 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.002 3.998 3 Si 0.904 3.096 4 H -0.282 1.282 5 H -0.291 1.291 6 H -0.283 1.283 7 C -0.254 4.254 8 H 0.067 0.933 9 N -0.592 5.592 10 C 0.175 3.825 11 C -0.153 4.153 12 C 0.097 3.903 13 O -0.337 6.337 14 C 0.549 3.451 15 O -0.509 6.509 16 C -0.028 4.028 17 C 0.040 3.960 18 N -0.410 5.410 19 C 0.131 3.869 20 C -0.131 4.131 21 C -0.091 4.091 22 C -0.125 4.125 23 C -0.092 4.092 24 C -0.130 4.130 25 C 0.193 3.807 26 N -0.432 5.432 27 C -0.127 4.127 28 C 0.149 3.851 29 H 0.255 0.745 30 H 0.093 0.907 31 H 0.022 0.978 32 H 0.065 0.935 33 H 0.054 0.946 34 H 0.079 0.921 35 H 0.196 0.804 36 H 0.134 0.866 37 H 0.135 0.865 38 H 0.131 0.869 39 H 0.135 0.865 40 H 0.135 0.865 41 H 0.218 0.782 42 H 0.059 0.941 43 H 0.071 0.929 44 H 0.021 0.979 45 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.040 -26.053 18.922 32.452 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.196 4.196 3 Si 0.734 3.266 4 H -0.208 1.208 5 H -0.217 1.217 6 H -0.210 1.210 7 C -0.384 4.384 8 H 0.084 0.916 9 N -0.315 5.315 10 C 0.049 3.951 11 C -0.193 4.193 12 C 0.044 3.956 13 O -0.252 6.252 14 C 0.393 3.607 15 O -0.398 6.398 16 C -0.154 4.154 17 C -0.095 4.095 18 N -0.088 5.088 19 C 0.038 3.962 20 C -0.150 4.150 21 C -0.110 4.110 22 C -0.143 4.143 23 C -0.111 4.111 24 C -0.149 4.149 25 C -0.090 4.090 26 N -0.149 5.149 27 C -0.166 4.166 28 C 0.022 3.978 29 H 0.065 0.935 30 H 0.111 0.889 31 H 0.040 0.960 32 H 0.083 0.917 33 H 0.072 0.928 34 H 0.097 0.903 35 H 0.213 0.787 36 H 0.152 0.848 37 H 0.153 0.847 38 H 0.148 0.852 39 H 0.153 0.847 40 H 0.152 0.848 41 H 0.234 0.766 42 H 0.078 0.922 43 H 0.090 0.910 44 H 0.039 0.961 45 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -3.691 -25.447 18.516 31.687 hybrid contribution -0.438 0.532 0.234 0.728 sum -4.129 -24.915 18.751 31.455 Atomic orbital electron populations 1.70020 1.05279 1.25695 1.53711 1.25071 0.95306 0.98492 1.00763 0.86343 0.78884 0.83230 0.78148 1.20849 1.21659 1.20986 1.19149 0.92593 0.84732 1.41888 0.91552 1.44108 1.35853 1.01670 1.49845 1.20762 0.88814 0.97989 0.87542 1.22676 1.00931 0.94658 1.01020 1.22981 0.99695 0.87390 0.85582 1.86698 1.36224 1.51858 1.50415 1.19484 0.82862 0.78131 0.80266 1.90864 1.26853 1.64368 1.57720 1.19609 0.90229 1.03644 1.01901 1.22689 1.00334 0.94765 0.91754 1.43147 1.09177 1.30331 1.26135 1.17882 0.92368 0.92764 0.93142 1.20998 0.91981 1.00525 1.01543 1.21098 1.00517 0.94876 0.94497 1.21320 0.94355 0.99969 0.98684 1.21075 0.94733 0.96980 0.98298 1.20884 1.00512 0.97757 0.95791 1.25447 0.83285 0.99090 1.01176 1.70798 1.26035 1.11705 1.06346 1.22215 0.96386 1.00047 0.97975 1.20893 0.98270 0.86507 0.92154 0.93517 0.88897 0.95953 0.91668 0.92767 0.90333 0.78731 0.84778 0.84734 0.85155 0.84724 0.84750 0.76592 0.92235 0.91050 0.96106 0.91804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.72 11.20 55.49 0.62 -26.10 16 2 C 0.00 0.07 4.92 -17.43 -0.09 -0.02 16 3 Si 0.90 22.06 29.59 -169.99 -5.03 17.03 16 4 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 5 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 6 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 7 C -0.25 -7.11 9.58 -15.06 -0.14 -7.26 16 8 H 0.07 1.81 7.88 -52.49 -0.41 1.39 16 9 N -0.59 -15.37 3.00 -172.31 -0.52 -15.89 16 10 C 0.17 4.42 5.30 -3.71 -0.02 4.40 16 11 C -0.15 -3.33 5.73 -26.59 -0.15 -3.48 16 12 C 0.10 1.96 2.42 -26.67 -0.06 1.90 16 13 O -0.34 -6.54 9.89 -40.77 -0.40 -6.94 16 14 C 0.55 9.93 7.92 34.35 0.27 10.20 16 15 O -0.51 -9.92 16.14 -19.30 -0.31 -10.23 16 16 C -0.03 -0.42 7.01 -83.11 -0.58 -1.01 16 17 C 0.04 0.45 10.57 -16.28 -0.17 0.28 16 18 N -0.41 -3.83 2.96 -61.90 -0.18 -4.02 16 19 C 0.13 0.94 6.63 -83.59 -0.55 0.39 16 20 C -0.13 -0.81 9.46 -39.41 -0.37 -1.18 16 21 C -0.09 -0.42 10.04 -39.61 -0.40 -0.82 16 22 C -0.12 -0.49 10.04 -39.55 -0.40 -0.89 16 23 C -0.09 -0.37 10.04 -39.61 -0.40 -0.77 16 24 C -0.13 -0.68 9.46 -39.40 -0.37 -1.05 16 25 C 0.19 1.89 11.88 -89.68 -1.07 0.82 16 26 N -0.43 -6.16 11.32 -10.99 -0.12 -6.28 16 27 C -0.13 -2.45 5.75 -26.61 -0.15 -2.60 16 28 C 0.15 3.23 6.52 -3.71 -0.02 3.21 16 29 H 0.25 7.29 8.31 -40.82 -0.34 6.95 16 30 H 0.09 2.58 6.06 -51.93 -0.31 2.26 16 31 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.06 1.44 8.14 -51.93 -0.42 1.02 16 33 H 0.05 1.14 8.14 -51.93 -0.42 0.71 16 34 H 0.08 1.64 7.16 -51.93 -0.37 1.27 16 35 H 0.20 1.75 7.11 -52.49 -0.37 1.38 16 36 H 0.13 0.72 6.78 -52.49 -0.36 0.36 16 37 H 0.13 0.35 8.06 -52.49 -0.42 -0.07 16 38 H 0.13 0.24 8.06 -52.49 -0.42 -0.19 16 39 H 0.13 0.23 8.06 -52.49 -0.42 -0.19 16 40 H 0.13 0.43 6.74 -52.48 -0.35 0.08 16 41 H 0.22 1.13 7.03 -52.49 -0.37 0.76 16 42 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 43 H 0.07 1.41 8.14 -51.93 -0.42 0.99 16 44 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 45 H 0.06 1.32 7.93 -51.92 -0.41 0.91 16 LS Contribution 376.71 15.07 5.68 5.68 Total: -1.00 -34.91 376.71 -10.86 -45.77 By element: Atomic # 1 Polarization: 4.76 SS G_CDS: -5.90 Total: -1.14 kcal Atomic # 6 Polarization: 6.81 SS G_CDS: -4.68 Total: 2.13 kcal Atomic # 7 Polarization: -52.09 SS G_CDS: -0.20 Total: -52.29 kcal Atomic # 8 Polarization: -16.46 SS G_CDS: -0.71 Total: -17.17 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.03 Total: 17.03 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -34.91 -10.86 -45.77 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000845497699.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.561 kcal (2) G-P(sol) polarization free energy of solvation -34.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.650 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.769 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.792 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds