Wall clock time and date at job start Sat Apr 11 2020 06:18:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30829 * 1 3 3 Si 1.86801 * 119.99736 * 2 1 4 4 H 1.48505 * 109.47160 * 359.97438 * 3 2 1 5 5 H 1.48495 * 109.47100 * 120.00151 * 3 2 1 6 6 H 1.48502 * 109.47051 * 240.00225 * 3 2 1 7 7 C 1.39937 * 120.00181 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00316 * 154.60639 * 7 2 1 9 9 C 1.41401 * 120.00394 * 334.60180 * 7 2 1 10 10 C 1.40739 * 120.23840 * 334.56896 * 9 7 2 11 11 C 1.37593 * 119.74077 * 180.02562 * 10 9 7 12 12 C 1.38658 * 120.25264 * 0.02562 * 11 10 9 13 13 C 1.38615 * 120.50051 * 0.02562 * 12 11 10 14 14 C 1.37643 * 120.24281 * 359.66907 * 13 12 11 15 15 C 1.50707 * 120.12639 * 180.31829 * 14 13 12 16 16 C 1.50694 * 109.47262 * 265.30991 * 15 14 13 17 17 O 1.21282 * 120.00405 * 0.02562 * 16 15 14 18 18 N 1.34773 * 120.00092 * 179.97438 * 16 15 14 19 19 C 1.46507 * 120.00266 * 180.02562 * 18 16 15 20 20 C 1.50696 * 109.47121 * 180.02562 * 19 18 16 21 21 C 1.40067 * 125.83366 * 95.00111 * 20 19 18 22 22 C 1.35191 * 107.73454 * 179.97438 * 21 20 19 23 23 N 1.35638 * 107.71983 * 0.07514 * 22 21 20 24 24 N 1.31098 * 125.82778 * 274.69027 * 20 19 18 25 25 C 1.46694 * 123.71452 * 179.80883 * 23 22 21 26 26 C 1.53533 * 107.97742 * 343.01844 * 25 23 22 27 27 C 1.53245 * 109.26799 * 47.16561 * 26 25 23 28 28 O 1.35968 * 128.72866 * 180.11781 * 22 21 20 29 29 H 0.96998 * 119.99709 * 174.17561 * 1 2 3 30 30 H 1.07996 * 120.12982 * 359.97438 * 10 9 7 31 31 H 1.08000 * 119.87342 * 180.02562 * 11 10 9 32 32 H 1.07996 * 119.75200 * 179.97438 * 12 11 10 33 33 H 1.07998 * 119.87807 * 179.97438 * 13 12 11 34 34 H 1.09001 * 109.47002 * 25.30721 * 15 14 13 35 35 H 1.08991 * 109.47139 * 145.30684 * 15 14 13 36 36 H 0.97000 * 120.00029 * 0.02562 * 18 16 15 37 37 H 1.09001 * 109.46742 * 300.00230 * 19 18 16 38 38 H 1.08991 * 109.47271 * 60.00114 * 19 18 16 39 39 H 1.08008 * 126.12939 * 0.02562 * 21 20 19 40 40 H 1.09003 * 109.75629 * 223.39761 * 25 23 22 41 41 H 1.08994 * 109.80296 * 102.66369 * 25 23 22 42 42 H 1.09002 * 109.50391 * 287.23268 * 26 25 23 43 43 H 1.08996 * 109.50825 * 167.10901 * 26 25 23 44 44 H 1.09002 * 109.50424 * 175.73784 * 27 26 25 45 45 H 1.08997 * 109.50642 * 55.60924 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 1.2771 2.7465 -0.0006 5 1 3.0960 1.6965 1.2124 6 1 3.0959 1.6965 -1.2125 7 6 2.0080 -1.2119 -0.0005 8 1 3.0097 -1.2569 -0.4016 9 6 1.4036 -2.3776 0.5241 10 6 0.3896 -2.2747 1.4946 11 6 -0.1912 -3.4157 1.9986 12 6 0.2195 -4.6634 1.5543 13 6 1.2180 -4.7766 0.5996 14 6 1.8086 -3.6485 0.0769 15 6 2.8891 -3.7745 -0.9661 16 6 4.2391 -3.7413 -0.2975 17 8 4.3165 -3.6271 0.9074 18 7 5.3607 -3.8395 -1.0384 19 6 6.6732 -3.8078 -0.3884 20 6 7.7535 -3.9337 -1.4314 21 6 8.4368 -2.8712 -2.0366 22 6 9.3231 -3.3968 -2.9117 23 7 9.2017 -4.7468 -2.8616 24 7 8.2183 -5.0565 -1.9233 25 6 10.0008 -5.6671 -3.6781 26 6 10.6208 -4.8626 -4.8294 27 6 11.2407 -3.5769 -4.2716 28 8 10.2032 -2.7510 -3.7224 29 1 -0.4849 -0.8357 -0.0852 30 1 0.0691 -1.3040 1.8430 31 1 -0.9698 -3.3393 2.7431 32 1 -0.2416 -5.5537 1.9556 33 1 1.5304 -5.7534 0.2610 34 1 2.7709 -4.7177 -1.4995 35 1 2.8121 -2.9465 -1.6708 36 1 5.2988 -3.9312 -2.0021 37 1 6.7917 -2.8647 0.1451 38 1 6.7498 -4.6358 0.3162 39 1 8.2837 -1.8205 -1.8388 40 1 9.3613 -6.4529 -4.0802 41 1 10.7902 -6.1093 -3.0705 42 1 9.8471 -4.6088 -5.5541 43 1 11.3937 -5.4584 -5.3149 44 1 11.7477 -3.0397 -5.0731 45 1 11.9580 -3.8279 -3.4903 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000848097735.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:27 Heat of formation + Delta-G solvation = 19.994184 kcal Electronic energy + Delta-G solvation = -28450.608756 eV Core-core repulsion = 24434.563425 eV Total energy + Delta-G solvation = -4016.045332 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.09829 -39.31623 -38.80642 -37.43471 -35.29856 -34.22334 -33.75833 -31.85144 -31.14269 -29.66601 -29.12530 -28.07559 -26.60735 -25.49243 -24.67356 -23.36654 -20.86890 -20.79916 -20.53341 -20.11869 -19.42824 -18.15867 -17.62501 -16.85555 -16.43518 -16.03072 -15.75789 -15.56301 -15.25048 -14.95871 -14.77600 -14.48100 -14.07680 -13.95912 -13.81528 -13.58008 -13.08796 -12.99204 -12.58102 -12.48819 -12.21861 -12.10729 -11.91889 -11.77740 -11.68133 -11.64154 -11.14186 -11.03793 -10.78404 -10.75161 -10.38499 -10.31527 -9.56340 -9.50136 -9.29131 -9.01175 -8.86957 -8.66586 -8.61336 -7.46477 -7.41560 -7.03622 -4.32854 1.52953 1.92714 2.37266 2.66261 2.86762 2.94607 3.22733 3.36475 3.40279 3.44802 3.65676 3.86095 3.90821 4.10228 4.23300 4.27213 4.54760 4.63949 4.68128 4.76912 4.90694 5.06142 5.19321 5.22548 5.44183 5.62352 5.70759 5.73734 5.85791 5.96917 6.03451 6.17110 6.26692 6.36893 6.42773 6.45276 6.76815 6.80458 6.98194 7.09284 7.30328 7.43053 7.51501 7.76721 7.91998 7.95193 8.00264 8.05117 8.30238 8.44136 8.87973 8.91530 9.01981 10.15775 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.013973 B = 0.002555 C = 0.002242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2003.394005 B =10955.680017 C =12486.643963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.800 5.800 2 C 0.040 3.960 3 Si 1.060 2.940 4 H -0.275 1.275 5 H -0.274 1.274 6 H -0.276 1.276 7 C -0.516 4.516 8 H 0.073 0.927 9 C 0.116 3.884 10 C -0.216 4.216 11 C -0.086 4.086 12 C -0.254 4.254 13 C -0.069 4.069 14 C -0.184 4.184 15 C -0.069 4.069 16 C 0.517 3.483 17 O -0.520 6.520 18 N -0.738 5.738 19 C 0.204 3.796 20 C 0.084 3.916 21 C -0.265 4.265 22 C 0.264 3.736 23 N -0.403 5.403 24 N -0.267 5.267 25 C 0.129 3.871 26 C -0.175 4.175 27 C 0.049 3.951 28 O -0.288 6.288 29 H 0.299 0.701 30 H 0.104 0.896 31 H 0.087 0.913 32 H 0.087 0.913 33 H 0.086 0.914 34 H 0.075 0.925 35 H 0.096 0.904 36 H 0.398 0.602 37 H 0.089 0.911 38 H 0.080 0.920 39 H 0.159 0.841 40 H 0.102 0.898 41 H 0.088 0.912 42 H 0.089 0.911 43 H 0.110 0.890 44 H 0.119 0.881 45 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.566 -7.239 -12.213 25.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.424 5.424 2 C -0.181 4.181 3 Si 0.884 3.116 4 H -0.200 1.200 5 H -0.200 1.200 6 H -0.202 1.202 7 C -0.544 4.544 8 H 0.091 0.909 9 C 0.113 3.887 10 C -0.236 4.236 11 C -0.105 4.105 12 C -0.273 4.273 13 C -0.087 4.087 14 C -0.186 4.186 15 C -0.109 4.109 16 C 0.305 3.695 17 O -0.394 6.394 18 N -0.394 5.394 19 C 0.079 3.921 20 C -0.082 4.082 21 C -0.295 4.295 22 C 0.097 3.903 23 N -0.198 5.198 24 N -0.093 5.093 25 C 0.009 3.991 26 C -0.214 4.214 27 C -0.026 4.026 28 O -0.195 6.195 29 H 0.112 0.888 30 H 0.122 0.878 31 H 0.105 0.895 32 H 0.105 0.895 33 H 0.104 0.896 34 H 0.094 0.906 35 H 0.114 0.886 36 H 0.231 0.769 37 H 0.107 0.893 38 H 0.098 0.902 39 H 0.177 0.823 40 H 0.120 0.880 41 H 0.106 0.894 42 H 0.108 0.892 43 H 0.128 0.872 44 H 0.137 0.863 45 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 21.427 -6.574 -11.410 25.150 hybrid contribution 0.566 -1.194 -0.682 1.487 sum 21.993 -7.768 -12.092 26.272 Atomic orbital electron populations 1.70451 1.08210 1.34241 1.29477 1.26926 0.95671 1.04167 0.91369 0.83718 0.75735 0.74118 0.78048 1.19990 1.19992 1.20192 1.20450 1.02745 0.93959 1.37236 0.90862 1.17397 0.90182 0.91821 0.89271 1.21133 1.03606 0.96942 1.01873 1.20594 0.98309 0.93258 0.98338 1.20256 1.05010 0.95775 1.06286 1.20361 0.96092 0.95827 0.96424 1.19017 1.02651 0.93543 1.03352 1.20236 0.89751 1.02523 0.98352 1.21193 0.85615 0.74911 0.87795 1.90688 1.87122 1.46995 1.14572 1.46083 1.04757 1.77759 1.10780 1.19433 0.78454 1.03540 0.90678 1.22208 0.97970 0.89828 0.98231 1.20318 1.04273 1.01094 1.03807 1.19466 0.94097 0.82722 0.93983 1.49080 1.32420 1.04195 1.34154 1.77375 1.04162 1.21959 1.05777 1.21876 0.94376 0.92007 0.90874 1.22646 1.02830 0.97689 0.98216 1.23104 0.88427 0.91808 0.99265 1.86642 1.38378 1.34124 1.60391 0.88759 0.87783 0.89452 0.89510 0.89606 0.90621 0.88588 0.76904 0.89337 0.90181 0.82302 0.88004 0.89417 0.89194 0.87197 0.86276 0.90990 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -21.52 12.32 55.55 0.68 -20.84 16 2 C 0.04 1.04 4.94 -17.34 -0.09 0.95 16 3 Si 1.06 22.31 30.00 -169.99 -5.10 17.21 16 4 H -0.28 -5.72 7.11 56.52 0.40 -5.31 16 5 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 6 H -0.28 -5.46 7.11 56.52 0.40 -5.06 16 7 C -0.52 -13.79 8.08 -37.74 -0.30 -14.09 16 8 H 0.07 1.92 6.73 -52.49 -0.35 1.57 16 9 C 0.12 3.14 5.30 -106.82 -0.57 2.57 16 10 C -0.22 -5.81 7.95 -38.87 -0.31 -6.12 16 11 C -0.09 -2.13 10.02 -39.66 -0.40 -2.52 16 12 C -0.25 -6.00 10.05 -39.29 -0.39 -6.39 16 13 C -0.07 -1.62 9.66 -39.66 -0.38 -2.00 16 14 C -0.18 -4.51 4.43 -103.91 -0.46 -4.97 16 15 C -0.07 -1.39 5.18 -29.03 -0.15 -1.54 16 16 C 0.52 10.42 7.46 -10.99 -0.08 10.34 16 17 O -0.52 -12.75 16.03 5.56 0.09 -12.66 16 18 N -0.74 -11.62 5.55 -61.48 -0.34 -11.96 16 19 C 0.20 2.98 6.23 -5.19 -0.03 2.95 16 20 C 0.08 1.13 6.59 -82.22 -0.54 0.59 16 21 C -0.27 -3.35 10.75 -39.98 -0.43 -3.78 16 22 C 0.26 3.05 7.57 -16.95 -0.13 2.93 16 23 N -0.40 -4.40 4.06 -61.08 -0.25 -4.65 16 24 N -0.27 -3.60 12.63 33.75 0.43 -3.18 16 25 C 0.13 0.80 7.41 -3.66 -0.03 0.77 16 26 C -0.18 -0.65 6.17 -26.33 -0.16 -0.81 16 27 C 0.05 0.24 7.01 37.28 0.26 0.50 16 28 O -0.29 -2.80 10.65 -19.64 -0.21 -3.01 16 29 H 0.30 8.23 6.68 -40.82 -0.27 7.96 16 30 H 0.10 2.87 6.49 -52.49 -0.34 2.53 16 31 H 0.09 1.91 8.06 -52.49 -0.42 1.49 16 32 H 0.09 1.82 8.06 -52.49 -0.42 1.40 16 33 H 0.09 1.78 8.06 -52.49 -0.42 1.36 16 34 H 0.08 1.29 8.05 -51.93 -0.42 0.87 16 35 H 0.10 1.91 7.06 -51.93 -0.37 1.55 16 36 H 0.40 5.37 8.46 -40.82 -0.35 5.02 16 37 H 0.09 1.30 8.14 -51.93 -0.42 0.88 16 38 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 39 H 0.16 1.84 8.06 -52.48 -0.42 1.42 16 40 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 42 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 43 H 0.11 0.07 8.14 -51.93 -0.42 -0.35 16 44 H 0.12 0.30 8.14 -51.93 -0.42 -0.13 16 45 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 LS Contribution 378.21 15.07 5.70 5.70 Total: -1.00 -34.21 378.21 -9.16 -43.37 By element: Atomic # 1 Polarization: 16.60 SS G_CDS: -5.97 Total: 10.64 kcal Atomic # 6 Polarization: -16.43 SS G_CDS: -4.19 Total: -20.62 kcal Atomic # 7 Polarization: -41.14 SS G_CDS: 0.52 Total: -40.62 kcal Atomic # 8 Polarization: -15.55 SS G_CDS: -0.12 Total: -15.67 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -5.10 Total: 17.21 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -34.21 -9.16 -43.37 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000848097735.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.363 kcal (2) G-P(sol) polarization free energy of solvation -34.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.369 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds