Wall clock time and date at job start Sat Apr 11 2020 06:18:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30829 * 1 3 3 Si 1.86801 * 119.99736 * 2 1 4 4 H 1.48505 * 109.47160 * 359.97438 * 3 2 1 5 5 H 1.48495 * 109.47100 * 120.00151 * 3 2 1 6 6 H 1.48502 * 109.47051 * 240.00225 * 3 2 1 7 7 C 1.39937 * 120.00181 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00316 * 154.60639 * 7 2 1 9 9 C 1.41401 * 120.00394 * 334.60180 * 7 2 1 10 10 C 1.40739 * 120.23840 * 334.56896 * 9 7 2 11 11 C 1.37593 * 119.74077 * 180.02562 * 10 9 7 12 12 C 1.38658 * 120.25264 * 0.02562 * 11 10 9 13 13 C 1.38615 * 120.50051 * 0.02562 * 12 11 10 14 14 C 1.37643 * 120.24281 * 359.66907 * 13 12 11 15 15 C 1.50707 * 120.12639 * 180.31829 * 14 13 12 16 16 C 1.50694 * 109.47262 * 265.30991 * 15 14 13 17 17 O 1.21282 * 120.00405 * 0.02562 * 16 15 14 18 18 N 1.34773 * 120.00092 * 179.97438 * 16 15 14 19 19 C 1.46507 * 120.00266 * 180.02562 * 18 16 15 20 20 C 1.50696 * 109.47121 * 180.02562 * 19 18 16 21 21 C 1.40067 * 125.83366 * 95.00111 * 20 19 18 22 22 C 1.35191 * 107.73454 * 179.97438 * 21 20 19 23 23 N 1.35638 * 107.71983 * 0.07514 * 22 21 20 24 24 N 1.31098 * 125.82778 * 274.69027 * 20 19 18 25 25 C 1.46694 * 123.71452 * 179.80883 * 23 22 21 26 26 C 1.53533 * 107.97742 * 343.01844 * 25 23 22 27 27 C 1.53245 * 109.26799 * 47.16561 * 26 25 23 28 28 O 1.35968 * 128.72866 * 180.11781 * 22 21 20 29 29 H 0.96998 * 119.99709 * 174.17561 * 1 2 3 30 30 H 1.07996 * 120.12982 * 359.97438 * 10 9 7 31 31 H 1.08000 * 119.87342 * 180.02562 * 11 10 9 32 32 H 1.07996 * 119.75200 * 179.97438 * 12 11 10 33 33 H 1.07998 * 119.87807 * 179.97438 * 13 12 11 34 34 H 1.09001 * 109.47002 * 25.30721 * 15 14 13 35 35 H 1.08991 * 109.47139 * 145.30684 * 15 14 13 36 36 H 0.97000 * 120.00029 * 0.02562 * 18 16 15 37 37 H 1.09001 * 109.46742 * 300.00230 * 19 18 16 38 38 H 1.08991 * 109.47271 * 60.00114 * 19 18 16 39 39 H 1.08008 * 126.12939 * 0.02562 * 21 20 19 40 40 H 1.09003 * 109.75629 * 223.39761 * 25 23 22 41 41 H 1.08994 * 109.80296 * 102.66369 * 25 23 22 42 42 H 1.09002 * 109.50391 * 287.23268 * 26 25 23 43 43 H 1.08996 * 109.50825 * 167.10901 * 26 25 23 44 44 H 1.09002 * 109.50424 * 175.73784 * 27 26 25 45 45 H 1.08997 * 109.50642 * 55.60924 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 1.2771 2.7465 -0.0006 5 1 3.0960 1.6965 1.2124 6 1 3.0959 1.6965 -1.2125 7 6 2.0080 -1.2119 -0.0005 8 1 3.0097 -1.2569 -0.4016 9 6 1.4036 -2.3776 0.5241 10 6 0.3896 -2.2747 1.4946 11 6 -0.1912 -3.4157 1.9986 12 6 0.2195 -4.6634 1.5543 13 6 1.2180 -4.7766 0.5996 14 6 1.8086 -3.6485 0.0769 15 6 2.8891 -3.7745 -0.9661 16 6 4.2391 -3.7413 -0.2975 17 8 4.3165 -3.6271 0.9074 18 7 5.3607 -3.8395 -1.0384 19 6 6.6732 -3.8078 -0.3884 20 6 7.7535 -3.9337 -1.4314 21 6 8.4368 -2.8712 -2.0366 22 6 9.3231 -3.3968 -2.9117 23 7 9.2017 -4.7468 -2.8616 24 7 8.2183 -5.0565 -1.9233 25 6 10.0008 -5.6671 -3.6781 26 6 10.6208 -4.8626 -4.8294 27 6 11.2407 -3.5769 -4.2716 28 8 10.2032 -2.7510 -3.7224 29 1 -0.4849 -0.8357 -0.0852 30 1 0.0691 -1.3040 1.8430 31 1 -0.9698 -3.3393 2.7431 32 1 -0.2416 -5.5537 1.9556 33 1 1.5304 -5.7534 0.2610 34 1 2.7709 -4.7177 -1.4995 35 1 2.8121 -2.9465 -1.6708 36 1 5.2988 -3.9312 -2.0021 37 1 6.7917 -2.8647 0.1451 38 1 6.7498 -4.6358 0.3162 39 1 8.2837 -1.8205 -1.8388 40 1 9.3613 -6.4529 -4.0802 41 1 10.7902 -6.1093 -3.0705 42 1 9.8471 -4.6088 -5.5541 43 1 11.3937 -5.4584 -5.3149 44 1 11.7477 -3.0397 -5.0731 45 1 11.9580 -3.8279 -3.4903 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000848097735.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:26 Heat of formation + Delta-G solvation = -3.027687 kcal Electronic energy + Delta-G solvation = -28451.607059 eV Core-core repulsion = 24434.563425 eV Total energy + Delta-G solvation = -4017.043635 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.91262 -40.82670 -39.70683 -39.22153 -36.19469 -35.70187 -35.29112 -33.56489 -32.08745 -31.06910 -30.53291 -29.34549 -27.80916 -26.82096 -26.22670 -24.03678 -22.79493 -22.35777 -21.64680 -21.10587 -20.70939 -19.59572 -18.93053 -17.79259 -17.59101 -17.07141 -16.81563 -16.73200 -16.52190 -16.35284 -15.84547 -15.76109 -15.65048 -15.28803 -15.08478 -14.73204 -14.41371 -14.18295 -14.01714 -13.81121 -13.78269 -13.47201 -13.27629 -12.94922 -12.72106 -12.63194 -12.56598 -12.29893 -12.20517 -12.11647 -11.95248 -11.68252 -11.45608 -11.18058 -10.91639 -10.79924 -10.12307 -10.07421 -9.49601 -9.41080 -9.39341 -9.02155 -6.35632 0.62055 0.94429 1.02312 1.20039 1.41711 1.50499 1.65908 1.79810 1.81132 2.03140 2.34809 2.54165 2.76373 3.10685 3.50822 3.56582 3.62711 3.91648 3.95986 4.09252 4.12343 4.28074 4.32159 4.36152 4.39403 4.51341 4.53898 4.59498 4.60497 4.63956 4.71316 4.75562 4.87290 4.93905 5.00900 5.11411 5.15077 5.36168 5.41530 5.46921 5.53944 5.83302 5.88463 6.02482 6.08679 6.25298 6.33123 6.48749 6.50730 6.61223 6.90546 7.05812 7.38619 8.12107 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.013973 B = 0.002555 C = 0.002242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2003.394005 B =10955.680017 C =12486.643963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.821 5.821 2 C 0.004 3.996 3 Si 1.107 2.893 4 H -0.270 1.270 5 H -0.274 1.274 6 H -0.253 1.253 7 C -0.540 4.540 8 H 0.070 0.930 9 C 0.086 3.914 10 C -0.245 4.245 11 C -0.096 4.096 12 C -0.252 4.252 13 C -0.080 4.080 14 C -0.190 4.190 15 C -0.068 4.068 16 C 0.521 3.479 17 O -0.571 6.571 18 N -0.718 5.718 19 C 0.209 3.791 20 C 0.078 3.922 21 C -0.288 4.288 22 C 0.269 3.731 23 N -0.397 5.397 24 N -0.290 5.290 25 C 0.114 3.886 26 C -0.164 4.164 27 C 0.036 3.964 28 O -0.303 6.303 29 H 0.284 0.716 30 H 0.083 0.917 31 H 0.109 0.891 32 H 0.118 0.882 33 H 0.118 0.882 34 H 0.112 0.888 35 H 0.096 0.904 36 H 0.411 0.589 37 H 0.084 0.916 38 H 0.074 0.926 39 H 0.161 0.839 40 H 0.110 0.890 41 H 0.105 0.895 42 H 0.082 0.918 43 H 0.149 0.851 44 H 0.147 0.853 45 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.979 -8.630 -14.244 29.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.444 5.444 2 C -0.212 4.212 3 Si 0.925 3.075 4 H -0.195 1.195 5 H -0.199 1.199 6 H -0.177 1.177 7 C -0.568 4.568 8 H 0.088 0.912 9 C 0.083 3.917 10 C -0.265 4.265 11 C -0.115 4.115 12 C -0.271 4.271 13 C -0.098 4.098 14 C -0.192 4.192 15 C -0.107 4.107 16 C 0.309 3.691 17 O -0.449 6.449 18 N -0.372 5.372 19 C 0.084 3.916 20 C -0.088 4.088 21 C -0.318 4.318 22 C 0.101 3.899 23 N -0.193 5.193 24 N -0.117 5.117 25 C -0.005 4.005 26 C -0.202 4.202 27 C -0.038 4.038 28 O -0.210 6.210 29 H 0.096 0.904 30 H 0.102 0.898 31 H 0.127 0.873 32 H 0.136 0.864 33 H 0.136 0.864 34 H 0.130 0.870 35 H 0.114 0.886 36 H 0.247 0.753 37 H 0.102 0.898 38 H 0.092 0.908 39 H 0.178 0.822 40 H 0.128 0.872 41 H 0.123 0.877 42 H 0.101 0.899 43 H 0.167 0.833 44 H 0.165 0.835 45 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 23.871 -8.002 -13.504 28.569 hybrid contribution -0.066 -0.966 -0.119 0.975 sum 23.805 -8.968 -13.622 28.856 Atomic orbital electron populations 1.70554 1.08882 1.33189 1.31792 1.28226 0.95727 1.07183 0.90027 0.83141 0.74928 0.70510 0.78955 1.19499 1.19912 1.17668 1.20560 1.02748 0.94849 1.38644 0.91182 1.17786 0.90800 0.93278 0.89834 1.21146 1.05131 0.96961 1.03227 1.20891 0.98711 0.93147 0.98719 1.20709 1.04451 0.96385 1.05539 1.20806 0.95791 0.97030 0.96198 1.19503 1.03110 0.92994 1.03593 1.20254 0.88702 1.04442 0.97332 1.21075 0.86471 0.74389 0.87136 1.90670 1.87822 1.49760 1.16613 1.45843 1.04365 1.75749 1.11244 1.19351 0.78148 1.03072 0.91067 1.21875 0.98102 0.90353 0.98455 1.20422 1.05265 1.01202 1.04927 1.19471 0.93884 0.83043 0.93518 1.49423 1.31709 1.04793 1.33420 1.77269 1.05358 1.22175 1.06859 1.22395 0.94557 0.92087 0.91486 1.22666 1.03423 0.97205 0.96914 1.23559 0.87478 0.92431 1.00301 1.86646 1.38959 1.35479 1.59920 0.90411 0.89836 0.87279 0.86360 0.86364 0.86987 0.88563 0.75344 0.89757 0.90802 0.82161 0.87220 0.87717 0.89904 0.83264 0.83514 0.90069 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -45.78 12.32 21.82 0.27 -45.51 16 2 C 0.00 0.23 4.94 85.25 0.42 0.65 16 3 Si 1.11 45.58 30.00 68.60 2.06 47.64 16 4 H -0.27 -10.84 7.11 99.48 0.71 -10.13 16 5 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 6 H -0.25 -9.36 7.11 99.48 0.71 -8.65 16 7 C -0.54 -29.74 8.08 23.46 0.19 -29.55 16 8 H 0.07 3.78 6.73 -2.91 -0.02 3.76 16 9 C 0.09 4.76 5.30 -21.29 -0.11 4.64 16 10 C -0.25 -13.63 7.95 22.73 0.18 -13.45 16 11 C -0.10 -4.75 10.02 22.22 0.22 -4.53 16 12 C -0.25 -11.52 10.05 22.46 0.23 -11.30 16 13 C -0.08 -3.65 9.66 22.22 0.21 -3.44 16 14 C -0.19 -9.32 4.43 -19.40 -0.09 -9.41 16 15 C -0.07 -2.68 5.18 29.10 0.15 -2.53 16 16 C 0.52 20.90 7.46 87.66 0.65 21.56 16 17 O -0.57 -28.42 16.03 -3.04 -0.05 -28.47 16 18 N -0.72 -22.24 5.55 -466.80 -2.59 -24.83 16 19 C 0.21 6.13 6.23 85.63 0.53 6.67 16 20 C 0.08 2.07 6.59 43.11 0.28 2.35 16 21 C -0.29 -7.21 10.75 22.01 0.24 -6.97 16 22 C 0.27 5.91 7.57 83.40 0.63 6.54 16 23 N -0.40 -8.04 4.06 -458.09 -1.86 -9.90 16 24 N -0.29 -7.57 12.63 -47.14 -0.60 -8.17 16 25 C 0.11 1.09 7.41 86.52 0.64 1.73 16 26 C -0.16 -0.64 6.17 30.86 0.19 -0.45 16 27 C 0.04 0.24 7.01 72.06 0.50 0.75 16 28 O -0.30 -5.32 10.65 -93.19 -0.99 -6.32 16 29 H 0.28 16.43 6.68 -92.71 -0.62 15.81 16 30 H 0.08 4.87 6.49 -2.91 -0.02 4.85 16 31 H 0.11 4.75 8.06 -2.91 -0.02 4.72 16 32 H 0.12 4.60 8.06 -2.91 -0.02 4.58 16 33 H 0.12 4.55 8.06 -2.91 -0.02 4.53 16 34 H 0.11 3.55 8.05 -2.39 -0.02 3.53 16 35 H 0.10 3.81 7.06 -2.39 -0.02 3.79 16 36 H 0.41 10.63 8.46 -92.71 -0.78 9.85 16 37 H 0.08 2.55 8.14 -2.39 -0.02 2.53 16 38 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 39 H 0.16 3.76 8.06 -2.91 -0.02 3.74 16 40 H 0.11 0.90 8.14 -2.39 -0.02 0.88 16 41 H 0.10 0.68 8.14 -2.39 -0.02 0.66 16 42 H 0.08 0.50 8.14 -2.39 -0.02 0.48 16 43 H 0.15 -0.55 8.14 -2.39 -0.02 -0.57 16 44 H 0.15 0.17 8.14 -2.39 -0.02 0.15 16 45 H 0.08 0.42 8.14 -2.39 -0.02 0.40 16 Total: -1.00 -77.27 378.21 1.72 -75.55 By element: Atomic # 1 Polarization: 36.33 SS G_CDS: 0.39 Total: 36.72 kcal Atomic # 6 Polarization: -41.81 SS G_CDS: 5.08 Total: -36.73 kcal Atomic # 7 Polarization: -83.63 SS G_CDS: -4.78 Total: -88.40 kcal Atomic # 8 Polarization: -33.74 SS G_CDS: -1.04 Total: -34.79 kcal Atomic # 14 Polarization: 45.58 SS G_CDS: 2.06 Total: 47.64 kcal Total: -77.27 1.72 -75.55 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000848097735.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.527 kcal (2) G-P(sol) polarization free energy of solvation -77.271 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.744 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.716 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.554 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.028 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds