Wall clock time and date at job start Sat Apr 11 2020 06:18:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86804 * 120.00232 * 2 1 4 4 H 1.48495 * 109.47105 * 275.54814 * 3 2 1 5 5 H 1.48503 * 109.46789 * 35.54391 * 3 2 1 6 6 H 1.48499 * 109.47042 * 155.54054 * 3 2 1 7 7 C 1.37875 * 119.99857 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00230 * 348.94271 * 7 2 1 9 9 C 1.50706 * 120.00021 * 168.94905 * 7 2 1 10 10 C 1.53005 * 115.54479 * 323.05779 * 9 7 2 11 11 O 1.45199 * 109.46877 * 183.99804 * 10 9 7 12 12 C 1.34851 * 117.00310 * 184.73231 * 11 10 9 13 13 O 1.21616 * 119.99369 * 354.55876 * 12 11 10 14 14 C 1.46592 * 120.00092 * 174.83746 * 12 11 10 15 15 C 1.41547 * 126.53467 * 5.26287 * 14 12 11 16 16 N 1.30262 * 108.18517 * 179.87867 * 15 14 12 17 17 N 1.39895 * 109.25808 * 0.38093 * 16 15 14 18 18 C 1.46495 * 125.73752 * 179.78488 * 17 16 15 19 19 C 1.50701 * 109.47404 * 269.96565 * 18 17 16 20 20 C 1.38231 * 119.99703 * 269.72465 * 19 18 17 21 21 C 1.38235 * 119.99823 * 179.76440 * 20 19 18 22 22 C 1.38235 * 120.00238 * 0.50742 * 21 20 19 23 23 C 1.38234 * 119.99576 * 359.74928 * 22 21 20 24 24 C 1.38232 * 120.00201 * 89.99946 * 19 18 17 25 25 C 1.34831 * 108.52715 * 359.75564 * 17 16 15 26 26 N 1.37950 * 126.45345 * 179.97438 * 25 17 16 27 27 C 1.52992 * 117.50291 * 108.73206 * 9 7 2 28 28 C 1.52995 * 117.49926 * 177.39590 * 9 7 2 29 29 H 0.97003 * 119.99881 * 359.97438 * 1 2 3 30 30 H 1.08996 * 109.47080 * 64.00157 * 10 9 7 31 31 H 1.08999 * 109.47431 * 303.99646 * 10 9 7 32 32 H 1.08000 * 125.90650 * 359.97438 * 15 14 12 33 33 H 1.09002 * 109.46947 * 29.96254 * 18 17 16 34 34 H 1.08999 * 109.47472 * 149.95904 * 18 17 16 35 35 H 1.07996 * 120.00425 * 359.97438 * 20 19 18 36 36 H 1.08005 * 120.00211 * 180.23258 * 21 20 19 37 37 H 1.07992 * 120.00348 * 179.71994 * 22 21 20 38 38 H 1.07999 * 119.99958 * 179.97438 * 23 22 21 39 39 H 1.08007 * 119.99929 * 359.97438 * 24 19 18 40 40 H 0.96991 * 119.99785 * 179.97438 * 26 25 17 41 41 H 0.96998 * 119.99559 * 359.97438 * 26 25 17 42 42 H 1.09004 * 117.49983 * 215.00355 * 27 9 7 43 43 H 1.09001 * 117.49767 * 0.02562 * 27 9 7 44 44 H 1.09001 * 117.49851 * 359.96841 * 28 9 7 45 45 H 1.09001 * 117.50167 * 144.97012 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.3795 2.1141 -1.3935 5 1 1.5101 2.6160 0.8139 6 1 3.6004 1.4091 0.5797 7 6 2.0045 -1.1941 -0.0005 8 1 1.4795 -2.1208 0.1784 9 6 3.4906 -1.2061 -0.2507 10 6 3.9946 -0.1922 -1.2798 11 8 5.4194 -0.3805 -1.4870 12 6 6.0423 0.5010 -2.2953 13 8 5.3961 1.3417 -2.8908 14 6 7.4977 0.4419 -2.4610 15 6 8.3675 -0.5387 -1.9267 16 7 9.5826 -0.2486 -2.2956 17 7 9.5646 0.9185 -3.0667 18 6 10.7345 1.5687 -3.6623 19 6 11.3008 2.5718 -2.6907 20 6 10.8576 3.8810 -2.7121 21 6 11.3736 4.8000 -1.8177 22 6 12.3403 4.4124 -0.9088 23 6 12.7872 3.1045 -0.8909 24 6 12.2675 2.1842 -1.7819 25 6 8.2894 1.3441 -3.1700 26 7 7.8508 2.4620 -3.8488 27 6 4.4041 -1.5229 0.9349 28 6 4.2083 -2.5553 -0.1781 29 1 -0.4850 0.8401 0.0004 30 1 3.8110 0.8181 -0.9145 31 1 3.4679 -0.3390 -2.2227 32 1 8.0741 -1.3823 -1.3196 33 1 11.4905 0.8175 -3.8909 34 1 10.4394 2.0779 -4.5797 35 1 10.1059 4.1850 -3.4254 36 1 11.0246 5.8221 -1.8319 37 1 12.7466 5.1315 -0.2130 38 1 13.5428 2.8017 -0.1811 39 1 12.6167 1.1622 -1.7678 40 1 6.9062 2.6816 -3.8624 41 1 8.4872 3.0285 -4.3125 42 1 5.3643 -1.0091 0.9819 43 1 3.9303 -1.7231 1.8959 44 1 3.6057 -3.4342 0.0511 45 1 5.0394 -2.7209 -0.8637 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000850135913.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:29 Heat of formation + Delta-G solvation = 56.606063 kcal Electronic energy + Delta-G solvation = -28967.818789 eV Core-core repulsion = 24953.361068 eV Total energy + Delta-G solvation = -4014.457721 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.53500 -39.70532 -39.33963 -36.98113 -35.39929 -34.87785 -34.20542 -32.21993 -31.35769 -30.98687 -29.11946 -27.63595 -26.75397 -25.14878 -23.18167 -22.77858 -22.22768 -21.30069 -20.86258 -20.08811 -19.07568 -18.25467 -17.30669 -17.13391 -16.80788 -16.33875 -16.08288 -15.79563 -15.70346 -15.30264 -15.03224 -14.73578 -14.45984 -13.86943 -13.78156 -13.53160 -13.39766 -13.10539 -13.00070 -12.82820 -12.65507 -12.47047 -11.74120 -11.70961 -11.48102 -11.41482 -11.02915 -10.95411 -10.68802 -10.40613 -10.33630 -10.03544 -9.63094 -9.44999 -9.39312 -9.36220 -9.18869 -9.14805 -8.63560 -8.28627 -8.01735 -6.20838 -4.15046 0.71534 0.95877 1.66448 2.07563 2.20693 3.26855 3.29017 3.31108 3.38545 3.42179 3.48442 3.57759 4.08457 4.14633 4.33052 4.49896 4.54365 4.68153 4.77717 4.80556 4.89936 5.03326 5.06617 5.17989 5.34019 5.40299 5.46748 5.57193 5.70569 5.83180 5.93030 5.96894 6.04366 6.06671 6.10214 6.12396 6.31668 6.50179 6.52254 6.62193 6.68937 6.83817 7.01737 7.07468 7.13356 7.27359 7.31097 7.67961 7.68989 8.34867 8.48061 8.84253 9.42120 10.91186 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.016410 B = 0.002733 C = 0.002626 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1705.905832 B =10241.064282 C =10660.683337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.077 3.923 3 Si 0.874 3.126 4 H -0.273 1.273 5 H -0.292 1.292 6 H -0.259 1.259 7 C -0.481 4.481 8 H 0.085 0.915 9 C 0.003 3.997 10 C 0.091 3.909 11 O -0.347 6.347 12 C 0.545 3.455 13 O -0.546 6.546 14 C -0.350 4.350 15 C 0.137 3.863 16 N -0.306 5.306 17 N -0.394 5.394 18 C 0.177 3.823 19 C -0.120 4.120 20 C -0.102 4.102 21 C -0.122 4.122 22 C -0.109 4.109 23 C -0.122 4.122 24 C -0.087 4.087 25 C 0.441 3.559 26 N -0.829 5.829 27 C -0.199 4.199 28 C -0.177 4.177 29 H 0.268 0.732 30 H 0.062 0.938 31 H 0.073 0.927 32 H 0.197 0.803 33 H 0.110 0.890 34 H 0.095 0.905 35 H 0.118 0.882 36 H 0.125 0.875 37 H 0.124 0.876 38 H 0.125 0.875 39 H 0.128 0.872 40 H 0.432 0.568 41 H 0.397 0.603 42 H 0.073 0.927 43 H 0.083 0.917 44 H 0.080 0.920 45 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.509 8.389 -7.655 29.762 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.126 4.126 3 Si 0.704 3.296 4 H -0.200 1.200 5 H -0.220 1.220 6 H -0.184 1.184 7 C -0.518 4.518 8 H 0.103 0.897 9 C 0.002 3.998 10 C 0.019 3.981 11 O -0.262 6.262 12 C 0.392 3.608 13 O -0.438 6.438 14 C -0.368 4.368 15 C -0.053 4.053 16 N -0.124 5.124 17 N -0.181 5.181 18 C 0.056 3.944 19 C -0.121 4.121 20 C -0.121 4.121 21 C -0.140 4.140 22 C -0.128 4.128 23 C -0.140 4.140 24 C -0.105 4.105 25 C 0.206 3.794 26 N -0.380 5.380 27 C -0.237 4.237 28 C -0.214 4.214 29 H 0.078 0.922 30 H 0.080 0.920 31 H 0.092 0.908 32 H 0.214 0.786 33 H 0.128 0.872 34 H 0.113 0.887 35 H 0.136 0.864 36 H 0.143 0.857 37 H 0.142 0.858 38 H 0.143 0.857 39 H 0.146 0.854 40 H 0.269 0.731 41 H 0.226 0.774 42 H 0.091 0.909 43 H 0.101 0.899 44 H 0.099 0.901 45 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 28.394 8.360 -7.810 30.612 hybrid contribution -0.690 1.700 -0.218 1.848 sum 27.703 10.060 -8.028 30.547 Atomic orbital electron populations 1.69899 1.06246 1.27377 1.48660 1.24997 0.94683 0.98978 0.93988 0.87125 0.79827 0.83861 0.78742 1.19959 1.21985 1.18450 1.20314 0.87433 0.95248 1.48767 0.89677 1.19379 0.93887 0.92871 0.93668 1.23439 0.74560 0.99957 1.00155 1.86495 1.26649 1.51540 1.61565 1.19692 0.86807 0.78234 0.76059 1.90729 1.67420 1.37981 1.47720 1.18436 0.91470 1.05491 1.21354 1.23962 0.88627 0.97555 0.95200 1.77145 1.21198 0.99472 1.14565 1.48303 1.03083 1.21922 1.44804 1.20470 0.86269 0.94423 0.93237 1.20022 0.98599 0.94270 0.99242 1.21013 0.99129 0.92842 0.99099 1.21154 0.97280 0.99751 0.95767 1.21263 0.96827 0.96386 0.98295 1.21215 1.00331 0.93471 0.98947 1.21105 0.95590 0.99735 0.94117 1.17933 0.85078 0.87023 0.89328 1.41825 1.13433 1.25499 1.57201 1.23091 1.01010 1.04920 0.94637 1.22729 1.02650 0.93538 1.02524 0.92234 0.92034 0.90836 0.78595 0.87151 0.88718 0.86414 0.85739 0.85813 0.85660 0.85436 0.73126 0.77366 0.90873 0.89874 0.90109 0.90145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.82 13.96 55.43 0.77 -26.05 16 2 C 0.08 2.24 5.43 -17.82 -0.10 2.14 16 3 Si 0.87 22.44 24.24 -169.99 -4.12 18.32 16 4 H -0.27 -7.02 7.11 56.52 0.40 -6.62 16 5 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 6 H -0.26 -6.50 6.38 56.52 0.36 -6.14 16 7 C -0.48 -13.61 9.57 -34.44 -0.33 -13.94 16 8 H 0.09 2.57 8.06 -52.48 -0.42 2.14 16 9 C 0.00 0.07 1.81 -155.66 -0.28 -0.21 16 10 C 0.09 2.17 4.25 37.16 0.16 2.33 16 11 O -0.35 -7.24 8.33 -40.90 -0.34 -7.58 16 12 C 0.54 10.61 7.92 34.10 0.27 10.88 16 13 O -0.55 -11.49 14.95 -19.36 -0.29 -11.78 16 14 C -0.35 -5.57 6.15 -104.83 -0.64 -6.21 16 15 C 0.14 1.93 11.86 -16.96 -0.20 1.73 16 16 N -0.31 -4.05 12.47 30.89 0.39 -3.66 16 17 N -0.39 -4.45 3.58 -61.21 -0.22 -4.66 16 18 C 0.18 1.31 6.34 -5.20 -0.03 1.27 16 19 C -0.12 -0.96 5.46 -104.63 -0.57 -1.53 16 20 C -0.10 -0.77 9.70 -39.58 -0.38 -1.15 16 21 C -0.12 -0.90 10.05 -39.58 -0.40 -1.30 16 22 C -0.11 -0.80 10.05 -39.58 -0.40 -1.20 16 23 C -0.12 -0.92 10.05 -39.58 -0.40 -1.31 16 24 C -0.09 -0.71 9.70 -39.58 -0.38 -1.09 16 25 C 0.44 5.69 7.98 -153.81 -1.23 4.46 16 26 N -0.83 -8.32 9.02 31.40 0.28 -8.04 16 27 C -0.20 -4.35 9.66 -26.70 -0.26 -4.61 16 28 C -0.18 -3.74 9.63 -26.70 -0.26 -4.00 16 29 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16 30 H 0.06 1.56 2.50 -51.93 -0.13 1.43 16 31 H 0.07 1.78 8.14 -51.93 -0.42 1.36 16 32 H 0.20 2.39 8.06 -52.49 -0.42 1.97 16 33 H 0.11 0.69 8.09 -51.93 -0.42 0.27 16 34 H 0.09 0.45 7.40 -51.93 -0.38 0.07 16 35 H 0.12 0.66 7.22 -52.49 -0.38 0.28 16 36 H 0.12 0.70 8.06 -52.48 -0.42 0.28 16 37 H 0.12 0.66 8.06 -52.49 -0.42 0.24 16 38 H 0.13 0.71 8.06 -52.49 -0.42 0.29 16 39 H 0.13 0.93 8.06 -52.48 -0.42 0.51 16 40 H 0.43 5.03 7.04 -40.82 -0.29 4.74 16 41 H 0.40 2.48 7.20 -40.82 -0.29 2.19 16 42 H 0.07 1.51 7.79 -51.93 -0.40 1.10 16 43 H 0.08 1.81 8.14 -51.93 -0.42 1.39 16 44 H 0.08 1.67 8.14 -51.93 -0.42 1.25 16 45 H 0.08 1.55 7.53 -51.93 -0.39 1.16 16 LS Contribution 378.60 15.07 5.71 5.71 Total: -1.00 -34.43 378.60 -8.93 -43.36 By element: Atomic # 1 Polarization: 13.81 SS G_CDS: -5.67 Total: 8.14 kcal Atomic # 6 Polarization: -8.31 SS G_CDS: -5.43 Total: -13.75 kcal Atomic # 7 Polarization: -43.64 SS G_CDS: 1.22 Total: -42.42 kcal Atomic # 8 Polarization: -18.73 SS G_CDS: -0.63 Total: -19.36 kcal Atomic # 14 Polarization: 22.44 SS G_CDS: -4.12 Total: 18.32 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -34.43 -8.93 -43.36 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000850135913.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.968 kcal (2) G-P(sol) polarization free energy of solvation -34.434 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.928 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.362 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds