Wall clock time and date at job start Sat Apr 11 2020 06:18:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31633 * 1 3 3 Si 1.86805 * 119.99675 * 2 1 4 4 H 1.48497 * 109.47177 * 240.00173 * 3 2 1 5 5 H 1.48500 * 109.46848 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47092 * 119.99943 * 3 2 1 7 7 C 1.38798 * 120.00264 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99599 * 179.97438 * 7 2 1 9 9 S 1.76194 * 119.99986 * 359.97438 * 7 2 1 10 10 C 1.81007 * 99.99849 * 179.97438 * 9 7 2 11 11 C 1.52999 * 109.46816 * 179.97438 * 10 9 7 12 12 C 1.53003 * 109.46725 * 180.02562 * 11 10 9 13 13 O 1.45199 * 109.46980 * 180.02562 * 12 11 10 14 14 C 1.34234 * 116.99947 * 179.97438 * 13 12 11 15 15 O 1.20822 * 120.00090 * 0.02562 * 14 13 12 16 16 C 1.50702 * 119.99997 * 179.72219 * 14 13 12 17 17 H 1.09008 * 109.70400 * 60.58688 * 16 14 13 18 18 C 1.53064 * 109.71180 * 300.00308 * 16 14 13 19 19 C 1.50157 * 110.12760 * 191.67075 * 18 16 14 20 20 O 1.21285 * 118.26115 * 197.21434 * 19 18 16 21 21 N 1.33527 * 123.47724 * 17.19124 * 19 18 16 22 22 C 1.45459 * 123.69663 * 357.53870 * 21 19 18 23 23 H 1.08998 * 108.23452 * 262.37983 * 22 21 19 24 24 C 1.52476 * 111.02468 * 143.72444 * 22 21 19 25 25 C 1.52977 * 109.94590 * 294.66564 * 24 22 21 26 26 C 1.53078 * 109.14147 * 300.36375 * 25 24 22 27 27 C 1.52906 * 109.24842 * 60.92918 * 26 25 24 28 28 C 1.52699 * 110.79360 * 20.23968 * 22 21 19 29 29 H 1.08998 * 109.95525 * 187.99589 * 28 22 21 30 30 H 0.96994 * 120.00225 * 0.02562 * 1 2 3 31 31 H 1.08997 * 109.46885 * 60.00515 * 10 9 7 32 32 H 1.08991 * 109.47207 * 300.00137 * 10 9 7 33 33 H 1.09002 * 109.47327 * 60.00386 * 11 10 9 34 34 H 1.08999 * 109.47240 * 299.99807 * 11 10 9 35 35 H 1.08997 * 109.47282 * 60.00393 * 12 11 10 36 36 H 1.09002 * 109.47256 * 299.99620 * 12 11 10 37 37 H 1.09000 * 109.36129 * 311.87104 * 18 16 14 38 38 H 1.08999 * 109.36216 * 71.46956 * 18 16 14 39 39 H 0.96995 * 118.15358 * 177.51150 * 21 19 18 40 40 H 1.08997 * 109.39574 * 54.81352 * 24 22 21 41 41 H 1.09003 * 109.39176 * 174.62261 * 24 22 21 42 42 H 1.09006 * 109.52828 * 60.26353 * 25 24 22 43 43 H 1.09000 * 109.52919 * 180.40000 * 25 24 22 44 44 H 1.08992 * 109.51249 * 180.86829 * 26 25 24 45 45 H 1.08996 * 109.50368 * 300.95917 * 26 25 24 46 46 H 1.09003 * 109.41297 * 59.49411 * 27 26 25 47 47 H 1.09001 * 109.40958 * 179.35613 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 3.1040 1.6966 -1.2125 5 1 1.2852 2.7464 -0.0006 6 1 3.1040 1.6965 1.2125 7 6 2.0104 -1.2020 0.0005 8 1 3.0904 -1.2019 0.0001 9 16 1.1295 -2.7279 0.0019 10 6 2.5162 -3.8913 0.0013 11 6 1.9796 -5.3241 0.0031 12 6 3.1518 -6.3075 0.0032 13 8 2.6427 -7.6673 0.0042 14 6 3.5491 -8.6574 0.0040 15 8 4.7288 -8.3964 0.0034 16 6 3.0954 -10.0945 0.0113 17 1 2.5002 -10.2965 -0.8794 18 6 2.2583 -10.3652 1.2638 19 6 2.0407 -11.8415 1.4308 20 8 1.1531 -12.2112 2.1700 21 7 2.7725 -12.7689 0.8083 22 6 3.8295 -12.4591 -0.1417 23 1 3.4194 -12.5441 -1.1480 24 6 4.9864 -13.4440 -0.0132 25 6 5.6556 -13.2875 1.3535 26 6 6.1787 -11.8558 1.4952 27 6 5.0061 -10.8791 1.4009 28 6 4.3184 -11.0240 0.0403 29 1 5.0054 -10.7602 -0.7638 30 1 -0.4850 0.8400 -0.0004 31 1 3.1253 -3.7308 0.8908 32 1 3.1240 -3.7316 -0.8891 33 1 1.3701 -5.4850 -0.8862 34 1 1.3720 -5.4836 0.8938 35 1 3.7609 -6.1466 0.8927 36 1 3.7598 -6.1483 -0.8873 37 1 2.7797 -9.9756 2.1381 38 1 1.2938 -9.8663 1.1687 39 1 2.5891 -13.7017 1.0008 40 1 4.6090 -14.4612 -0.1170 41 1 5.7177 -13.2475 -0.7973 42 1 4.9288 -13.4894 2.1404 43 1 6.4856 -13.9893 1.4353 44 1 6.6706 -11.7419 2.4612 45 1 6.8914 -11.6481 0.6971 46 1 4.2900 -11.0951 2.1938 47 1 5.3742 -9.8592 1.5130 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000850150201.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:31 Heat of formation + Delta-G solvation = -156.562282 kcal Electronic energy + Delta-G solvation = -27416.749884 eV Core-core repulsion = 23496.199689 eV Total energy + Delta-G solvation = -3920.550194 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.149 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.90354 -40.27272 -38.49585 -36.87141 -34.87756 -34.23949 -33.49451 -32.45818 -30.38311 -29.80473 -27.18927 -25.87570 -25.31803 -23.38604 -23.26349 -21.41751 -21.29682 -20.73759 -18.79883 -17.93225 -17.45551 -17.38057 -16.86384 -16.51642 -16.33099 -16.05072 -15.84501 -14.94451 -14.83466 -14.57521 -14.54582 -14.12581 -14.04481 -13.64059 -13.42134 -13.13174 -12.89464 -12.80342 -12.72228 -12.49253 -12.14560 -12.08803 -11.76217 -11.52854 -11.37660 -11.18347 -11.02983 -11.00045 -10.98371 -10.87089 -10.81388 -10.69606 -10.59836 -10.34285 -10.05365 -9.65208 -9.45959 -9.08484 -8.38125 -6.58443 -6.26045 -3.97501 1.94370 2.24845 2.38557 2.81012 3.19884 3.21758 3.26438 3.50082 3.79364 3.96666 4.05715 4.14703 4.18716 4.38157 4.46807 4.51310 4.60940 4.76315 4.83501 4.89359 4.92902 5.00420 5.05628 5.10445 5.12111 5.22228 5.23153 5.33950 5.36594 5.38712 5.43567 5.49737 5.60170 5.63635 5.73185 5.74974 5.83174 5.89097 5.92858 6.12513 6.34309 6.38414 6.41220 6.63358 6.88885 7.55570 7.57171 7.80471 8.32954 9.20075 10.81991 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.026009 B = 0.001823 C = 0.001748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1076.290066 B =15352.295121 C =16015.595577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.869 5.869 2 C 0.071 3.929 3 Si 0.920 3.080 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.274 1.274 7 C -0.519 4.519 8 H 0.073 0.927 9 S -0.123 6.123 10 C -0.114 4.114 11 C -0.098 4.098 12 C 0.073 3.927 13 O -0.352 6.352 14 C 0.467 3.533 15 O -0.501 6.501 16 C -0.083 4.083 17 H 0.118 0.882 18 C -0.129 4.129 19 C 0.528 3.472 20 O -0.550 6.550 21 N -0.712 5.712 22 C 0.146 3.854 23 H 0.074 0.926 24 C -0.126 4.126 25 C -0.121 4.121 26 C -0.117 4.117 27 C -0.126 4.126 28 C -0.081 4.081 29 H 0.106 0.894 30 H 0.269 0.731 31 H 0.064 0.936 32 H 0.064 0.936 33 H 0.078 0.922 34 H 0.079 0.921 35 H 0.071 0.929 36 H 0.071 0.929 37 H 0.109 0.891 38 H 0.118 0.882 39 H 0.400 0.600 40 H 0.071 0.929 41 H 0.082 0.918 42 H 0.063 0.937 43 H 0.065 0.935 44 H 0.064 0.936 45 H 0.066 0.934 46 H 0.062 0.938 47 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.094 -29.436 -0.890 31.470 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.504 5.504 2 C -0.138 4.138 3 Si 0.746 3.254 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.199 1.199 7 C -0.668 4.668 8 H 0.091 0.909 9 S 0.105 5.895 10 C -0.263 4.263 11 C -0.137 4.137 12 C -0.002 4.002 13 O -0.268 6.268 14 C 0.309 3.691 15 O -0.389 6.389 16 C -0.102 4.102 17 H 0.136 0.864 18 C -0.169 4.169 19 C 0.314 3.686 20 O -0.428 6.428 21 N -0.365 5.365 22 C 0.040 3.960 23 H 0.091 0.909 24 C -0.164 4.164 25 C -0.159 4.159 26 C -0.154 4.154 27 C -0.163 4.163 28 C -0.099 4.099 29 H 0.124 0.876 30 H 0.078 0.922 31 H 0.082 0.918 32 H 0.082 0.918 33 H 0.097 0.903 34 H 0.097 0.903 35 H 0.089 0.911 36 H 0.089 0.911 37 H 0.127 0.873 38 H 0.136 0.864 39 H 0.236 0.764 40 H 0.090 0.910 41 H 0.101 0.899 42 H 0.082 0.918 43 H 0.084 0.916 44 H 0.083 0.917 45 H 0.085 0.915 46 H 0.081 0.919 47 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 9.720 -29.314 -0.554 30.889 hybrid contribution 2.011 1.121 -0.066 2.303 sum 11.731 -28.194 -0.620 30.543 Atomic orbital electron populations 1.70004 1.05918 1.27552 1.46963 1.25021 0.95104 0.99125 0.94511 0.86203 0.79226 0.81115 0.78874 1.19916 1.20785 1.19902 1.22649 0.94544 0.90691 1.58881 0.90898 1.84671 1.08707 0.99207 1.96888 1.23177 1.03472 0.96358 1.03301 1.21294 0.96432 0.91569 1.04392 1.23309 0.97827 0.76452 1.02629 1.86488 1.40200 1.17004 1.83121 1.23272 0.84752 0.88316 0.72735 1.90662 1.18405 1.84865 1.44922 1.21298 0.98696 0.88719 1.01483 0.86424 1.21699 1.03393 0.93291 0.98539 1.19927 0.80817 0.88569 0.79243 1.90800 1.32200 1.81631 1.38145 1.45530 1.35766 1.09968 1.45192 1.20706 0.88071 0.94675 0.92514 0.90856 1.21745 0.96983 0.98729 0.98989 1.21557 1.00206 0.97214 0.96924 1.21493 0.97576 0.94141 1.02221 1.21803 0.97682 1.01325 0.95502 1.21457 0.95536 0.91923 1.01031 0.87592 0.92168 0.91755 0.91760 0.90314 0.90280 0.91073 0.91081 0.87307 0.86385 0.76363 0.91020 0.89903 0.91800 0.91645 0.91724 0.91535 0.91911 0.89887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.73 13.22 55.49 0.73 -25.00 16 2 C 0.07 2.02 5.49 -17.43 -0.10 1.92 16 3 Si 0.92 21.35 29.55 -169.99 -5.02 16.33 16 4 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 5 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 6 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 7 C -0.52 -14.71 9.50 30.94 0.29 -14.42 16 8 H 0.07 1.99 7.80 -52.48 -0.41 1.58 16 9 S -0.12 -3.15 21.44 -107.50 -2.30 -5.46 16 10 C -0.11 -2.23 5.67 37.16 0.21 -2.02 16 11 C -0.10 -1.54 5.60 -26.73 -0.15 -1.69 16 12 C 0.07 0.97 5.47 37.16 0.20 1.18 16 13 O -0.35 -4.32 10.15 -39.27 -0.40 -4.71 16 14 C 0.47 5.01 6.96 36.01 0.25 5.26 16 15 O -0.50 -6.39 13.99 -18.75 -0.26 -6.66 16 16 C -0.08 -0.61 2.51 -91.40 -0.23 -0.84 16 17 H 0.12 0.69 8.12 -51.92 -0.42 0.27 16 18 C -0.13 -1.06 4.63 -28.11 -0.13 -1.19 16 19 C 0.53 4.86 6.84 -11.80 -0.08 4.78 16 20 O -0.55 -7.44 17.79 5.55 0.10 -7.34 16 21 N -0.71 -4.39 4.66 -55.38 -0.26 -4.65 16 22 C 0.15 0.66 2.89 -68.91 -0.20 0.46 16 23 H 0.07 0.26 8.14 -51.93 -0.42 -0.16 16 24 C -0.13 -0.43 5.54 -27.01 -0.15 -0.58 16 25 C -0.12 -0.55 5.84 -26.70 -0.16 -0.71 16 26 C -0.12 -0.67 5.92 -26.74 -0.16 -0.83 16 27 C -0.13 -0.90 4.31 -26.71 -0.12 -1.01 16 28 C -0.08 -0.50 1.81 -90.37 -0.16 -0.66 16 29 H 0.11 0.66 7.89 -51.93 -0.41 0.25 16 30 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 31 H 0.06 1.23 8.14 -51.92 -0.42 0.81 16 32 H 0.06 1.23 8.14 -51.92 -0.42 0.80 16 33 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 34 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 35 H 0.07 0.94 8.13 -51.93 -0.42 0.52 16 36 H 0.07 0.94 8.13 -51.93 -0.42 0.51 16 37 H 0.11 0.89 6.76 -51.93 -0.35 0.54 16 38 H 0.12 0.99 8.14 -51.93 -0.42 0.56 16 39 H 0.40 2.16 8.68 -40.82 -0.35 1.81 16 40 H 0.07 0.18 8.14 -51.93 -0.42 -0.25 16 41 H 0.08 0.23 8.14 -51.93 -0.42 -0.19 16 42 H 0.06 0.35 7.87 -51.93 -0.41 -0.06 16 43 H 0.06 0.26 8.14 -51.93 -0.42 -0.17 16 44 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 45 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 46 H 0.06 0.48 5.43 -51.93 -0.28 0.20 16 47 H 0.08 0.76 6.31 -51.93 -0.33 0.43 16 LS Contribution 384.10 15.07 5.79 5.79 Total: -1.00 -33.76 384.10 -9.89 -43.65 By element: Atomic # 1 Polarization: 6.00 SS G_CDS: -7.59 Total: -1.60 kcal Atomic # 6 Polarization: -9.68 SS G_CDS: -0.67 Total: -10.34 kcal Atomic # 7 Polarization: -30.12 SS G_CDS: 0.48 Total: -29.65 kcal Atomic # 8 Polarization: -18.15 SS G_CDS: -0.56 Total: -18.71 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Atomic # 16 Polarization: -3.15 SS G_CDS: -2.30 Total: -5.46 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -33.76 -9.89 -43.65 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000850150201.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -112.914 kcal (2) G-P(sol) polarization free energy of solvation -33.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.648 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds