Wall clock time and date at job start Sat Apr 11 2020 06:18:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31629 * 1 3 3 Si 1.86792 * 120.00163 * 2 1 4 4 H 1.48502 * 109.47030 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47322 * 299.99529 * 3 2 1 6 6 H 1.48505 * 109.47181 * 59.99955 * 3 2 1 7 7 C 1.38800 * 119.99473 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99930 * 180.02562 * 7 2 1 9 9 S 1.76192 * 120.00492 * 359.97438 * 7 2 1 10 10 C 1.80993 * 100.00277 * 180.02562 * 9 7 2 11 11 C 1.53008 * 109.47528 * 180.02562 * 10 9 7 12 12 C 1.52995 * 109.47304 * 179.97438 * 11 10 9 13 13 O 1.45206 * 109.46934 * 179.97438 * 12 11 10 14 14 C 1.34232 * 116.99805 * 180.02562 * 13 12 11 15 15 O 1.20821 * 119.99999 * 359.97438 * 14 13 12 16 16 C 1.50693 * 119.99561 * 180.02562 * 14 13 12 17 17 H 1.09004 * 109.71192 * 323.94720 * 16 14 13 18 18 C 1.53072 * 109.70955 * 203.36225 * 16 14 13 19 19 C 1.50160 * 110.12781 * 288.95883 * 18 16 14 20 20 O 1.21281 * 118.26080 * 162.77756 * 19 18 16 21 21 N 1.33521 * 123.47445 * 342.80195 * 19 18 16 22 22 C 1.45460 * 123.70211 * 2.46996 * 21 19 18 23 23 H 1.09001 * 108.24002 * 97.61727 * 22 21 19 24 24 C 1.52477 * 111.02435 * 216.27531 * 22 21 19 25 25 C 1.52971 * 109.94954 * 65.32682 * 24 22 21 26 26 C 1.53069 * 109.14046 * 59.63872 * 25 24 22 27 27 C 1.52909 * 109.25107 * 299.06634 * 26 25 24 28 28 C 1.52703 * 110.79087 * 339.75214 * 22 21 19 29 29 H 1.08995 * 109.95676 * 172.00722 * 28 22 21 30 30 H 0.96995 * 119.99954 * 0.02562 * 1 2 3 31 31 H 1.09001 * 109.47194 * 299.99479 * 10 9 7 32 32 H 1.08998 * 109.47255 * 59.99997 * 10 9 7 33 33 H 1.08995 * 109.46732 * 300.00154 * 11 10 9 34 34 H 1.09007 * 109.46971 * 59.99966 * 11 10 9 35 35 H 1.08995 * 109.47710 * 299.99994 * 12 11 10 36 36 H 1.09007 * 109.46776 * 60.00285 * 12 11 10 37 37 H 1.09003 * 109.35949 * 49.15604 * 18 16 14 38 38 H 1.09001 * 109.36538 * 168.75536 * 18 16 14 39 39 H 0.96998 * 118.14916 * 182.48490 * 21 19 18 40 40 H 1.09005 * 109.39061 * 185.47372 * 24 22 21 41 41 H 1.09002 * 109.39001 * 305.17650 * 24 22 21 42 42 H 1.09004 * 109.52852 * 179.53782 * 25 24 22 43 43 H 1.09001 * 109.52754 * 299.66875 * 25 24 22 44 44 H 1.09000 * 109.51085 * 58.99583 * 26 25 24 45 45 H 1.08999 * 109.51506 * 179.09244 * 26 25 24 46 46 H 1.09002 * 109.41715 * 180.70875 * 27 26 25 47 47 H 1.08995 * 109.41698 * 300.51110 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.7103 1.3462 0.0006 5 1 1.8917 2.3963 -1.2125 6 1 1.8916 2.3964 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2022 0.0010 9 16 1.1292 -2.7280 0.0019 10 6 2.5156 -3.8914 0.0029 11 6 1.9791 -5.3244 0.0036 12 6 3.1511 -6.3078 0.0038 13 8 2.6418 -7.6676 0.0050 14 6 3.5482 -8.6578 0.0059 15 8 4.7279 -8.3969 0.0052 16 6 3.0942 -10.0947 0.0066 17 1 2.1921 -10.1950 0.6103 18 6 4.1999 -10.9852 0.5789 19 6 5.3429 -11.0773 -0.3906 20 8 6.4146 -11.4688 0.0207 21 7 5.2419 -10.7506 -1.6812 22 6 4.0308 -10.2195 -2.2871 23 1 4.1201 -9.1341 -2.3333 24 6 3.8542 -10.7445 -3.7077 25 6 3.6255 -12.2568 -3.6805 26 6 2.3702 -12.5599 -2.8588 27 6 2.5722 -12.0618 -1.4273 28 6 2.8084 -10.5487 -1.4332 29 1 1.9328 -10.0279 -1.8207 30 1 -0.4850 0.8400 -0.0004 31 1 3.1242 -3.7323 -0.8872 32 1 3.1243 -3.7306 0.8928 33 1 1.3703 -5.4839 0.8934 34 1 1.3707 -5.4849 -0.8866 35 1 3.7596 -6.1482 -0.8862 36 1 3.7598 -6.1474 0.8938 37 1 4.5558 -10.5609 1.5178 38 1 3.8013 -11.9828 0.7635 39 1 6.0201 -10.8746 -2.2469 40 1 2.9957 -10.2569 -4.1696 41 1 4.7496 -10.5242 -4.2888 42 1 3.4920 -12.6235 -4.6983 43 1 4.4866 -12.7474 -3.2266 44 1 1.5133 -12.0534 -3.3028 45 1 2.1923 -13.6353 -2.8489 46 1 1.6846 -12.2876 -0.8364 47 1 3.4355 -12.5617 -0.9881 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000850150206.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:36 Heat of formation + Delta-G solvation = -155.550989 kcal Electronic energy + Delta-G solvation = -27812.874226 eV Core-core repulsion = 23892.367885 eV Total energy + Delta-G solvation = -3920.506341 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.149 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.00943 -40.04577 -38.36796 -36.88613 -34.73248 -34.22427 -33.51727 -32.47438 -30.38299 -29.78913 -27.30695 -25.83468 -25.24313 -23.37717 -22.97497 -21.72479 -21.37111 -20.66801 -18.94512 -17.73701 -17.41058 -17.29466 -17.01735 -16.46608 -16.30002 -16.07262 -15.39137 -14.84814 -14.78753 -14.65995 -14.45200 -14.36202 -13.82667 -13.57369 -13.49944 -13.16980 -12.94758 -12.80641 -12.61593 -12.49774 -12.21283 -12.08348 -11.86883 -11.56350 -11.40068 -11.19466 -11.10427 -11.03977 -11.03162 -10.91911 -10.73789 -10.70761 -10.44573 -10.35296 -10.00048 -9.65931 -9.26862 -9.11435 -8.39383 -6.60162 -6.28074 -3.99201 1.95213 2.39247 2.47028 2.99785 3.18426 3.19697 3.27536 3.49525 3.87050 3.91762 3.96339 4.16910 4.22299 4.38417 4.49314 4.57371 4.60974 4.71532 4.83234 4.86018 4.97878 5.02292 5.04775 5.08917 5.12157 5.15785 5.22812 5.27022 5.34796 5.37601 5.42600 5.47964 5.55262 5.60241 5.66489 5.71495 5.71772 5.84168 5.87461 6.10219 6.35956 6.39415 6.53046 6.61691 7.09376 7.56490 7.57232 8.00253 8.32105 9.18665 10.80159 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.021143 B = 0.001980 C = 0.001929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1323.993502 B =14134.866776 C =14514.090489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.869 5.869 2 C 0.071 3.929 3 Si 0.920 3.080 4 H -0.271 1.271 5 H -0.279 1.279 6 H -0.279 1.279 7 C -0.518 4.518 8 H 0.074 0.926 9 S -0.124 6.124 10 C -0.115 4.115 11 C -0.097 4.097 12 C 0.072 3.928 13 O -0.352 6.352 14 C 0.459 3.541 15 O -0.497 6.497 16 C -0.085 4.085 17 H 0.122 0.878 18 C -0.124 4.124 19 C 0.536 3.464 20 O -0.558 6.558 21 N -0.704 5.704 22 C 0.140 3.860 23 H 0.067 0.933 24 C -0.127 4.127 25 C -0.121 4.121 26 C -0.119 4.119 27 C -0.118 4.118 28 C -0.086 4.086 29 H 0.108 0.892 30 H 0.267 0.733 31 H 0.063 0.937 32 H 0.064 0.936 33 H 0.078 0.922 34 H 0.078 0.922 35 H 0.070 0.930 36 H 0.070 0.930 37 H 0.107 0.893 38 H 0.116 0.884 39 H 0.399 0.601 40 H 0.083 0.917 41 H 0.071 0.929 42 H 0.066 0.934 43 H 0.064 0.936 44 H 0.068 0.932 45 H 0.066 0.934 46 H 0.075 0.925 47 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.218 -27.841 -5.762 28.612 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.505 5.505 2 C -0.138 4.138 3 Si 0.746 3.254 4 H -0.196 1.196 5 H -0.205 1.205 6 H -0.205 1.205 7 C -0.666 4.666 8 H 0.092 0.908 9 S 0.104 5.896 10 C -0.263 4.263 11 C -0.135 4.135 12 C -0.003 4.003 13 O -0.268 6.268 14 C 0.301 3.699 15 O -0.384 6.384 16 C -0.104 4.104 17 H 0.140 0.860 18 C -0.163 4.163 19 C 0.324 3.676 20 O -0.437 6.437 21 N -0.356 5.356 22 C 0.034 3.966 23 H 0.085 0.915 24 C -0.165 4.165 25 C -0.158 4.158 26 C -0.156 4.156 27 C -0.155 4.155 28 C -0.105 4.105 29 H 0.126 0.874 30 H 0.077 0.923 31 H 0.082 0.918 32 H 0.083 0.917 33 H 0.097 0.903 34 H 0.097 0.903 35 H 0.088 0.912 36 H 0.089 0.911 37 H 0.125 0.875 38 H 0.134 0.866 39 H 0.235 0.765 40 H 0.102 0.898 41 H 0.090 0.910 42 H 0.085 0.915 43 H 0.083 0.917 44 H 0.086 0.914 45 H 0.085 0.915 46 H 0.093 0.907 47 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 2.645 -27.939 -5.392 28.577 hybrid contribution 2.210 1.601 -0.218 2.738 sum 4.855 -26.338 -5.610 27.363 Atomic orbital electron populations 1.70022 1.05923 1.27335 1.47190 1.25022 0.95108 0.99153 0.94512 0.86092 0.79661 0.81731 0.77927 1.19580 1.20522 1.20520 1.22732 0.94614 0.90632 1.58603 0.90797 1.84640 1.08753 0.99282 1.96880 1.23181 1.03465 0.96349 1.03337 1.21283 0.96382 0.91569 1.04311 1.23298 0.97808 0.76542 1.02616 1.86485 1.40154 1.16923 1.83251 1.23431 0.84917 0.88599 0.72971 1.90731 1.18427 1.84828 1.44460 1.21301 1.01367 0.87951 0.99797 0.85958 1.21659 0.93394 1.01893 0.99400 1.19750 0.89591 0.75755 0.82552 1.90757 1.28582 1.47833 1.76513 1.45305 1.14782 1.65818 1.09730 1.20712 0.84540 0.98129 0.93199 0.91502 1.21749 1.03223 0.96794 0.94755 1.21541 0.98442 0.95487 1.00365 1.21521 0.98126 1.01148 0.94823 1.21700 1.02586 0.93220 0.97988 1.21558 0.98694 0.98181 0.92090 0.87373 0.92281 0.91776 0.91741 0.90313 0.90346 0.91206 0.91120 0.87499 0.86558 0.76505 0.89848 0.90998 0.91536 0.91714 0.91377 0.91503 0.90681 0.91311 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.59 13.22 55.49 0.73 -24.86 16 2 C 0.07 2.00 5.49 -17.43 -0.10 1.90 16 3 Si 0.92 21.34 29.55 -169.99 -5.02 16.31 16 4 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 5 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 6 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 7 C -0.52 -14.62 9.50 30.94 0.29 -14.33 16 8 H 0.07 2.03 7.80 -52.49 -0.41 1.62 16 9 S -0.12 -3.15 21.44 -107.50 -2.30 -5.46 16 10 C -0.11 -2.23 5.67 37.16 0.21 -2.02 16 11 C -0.10 -1.51 5.60 -26.73 -0.15 -1.66 16 12 C 0.07 0.99 5.47 37.15 0.20 1.19 16 13 O -0.35 -4.33 10.22 -39.26 -0.40 -4.73 16 14 C 0.46 5.23 5.68 36.00 0.20 5.43 16 15 O -0.50 -7.23 14.26 -18.75 -0.27 -7.50 16 16 C -0.08 -0.62 2.81 -91.40 -0.26 -0.88 16 17 H 0.12 0.61 8.14 -51.93 -0.42 0.19 16 18 C -0.12 -1.02 4.54 -28.11 -0.13 -1.15 16 19 C 0.54 6.05 5.54 -11.81 -0.07 5.99 16 20 O -0.56 -8.70 17.79 5.56 0.10 -8.60 16 21 N -0.70 -6.33 4.47 -55.37 -0.25 -6.58 16 22 C 0.14 1.00 2.34 -68.91 -0.16 0.84 16 23 H 0.07 0.61 6.90 -51.93 -0.36 0.25 16 24 C -0.13 -0.65 5.54 -27.01 -0.15 -0.80 16 25 C -0.12 -0.56 5.84 -26.71 -0.16 -0.71 16 26 C -0.12 -0.49 5.92 -26.74 -0.16 -0.64 16 27 C -0.12 -0.52 4.55 -26.70 -0.12 -0.65 16 28 C -0.09 -0.51 2.36 -90.36 -0.21 -0.72 16 29 H 0.11 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 31 H 0.06 1.23 8.14 -51.92 -0.42 0.81 16 32 H 0.06 1.25 8.14 -51.92 -0.42 0.82 16 33 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 34 H 0.08 1.20 8.14 -51.93 -0.42 0.77 16 35 H 0.07 0.95 8.13 -51.93 -0.42 0.52 16 36 H 0.07 0.98 8.13 -51.93 -0.42 0.56 16 37 H 0.11 0.98 8.10 -51.93 -0.42 0.56 16 38 H 0.12 0.63 6.81 -51.93 -0.35 0.28 16 39 H 0.40 3.41 8.68 -40.82 -0.35 3.06 16 40 H 0.08 0.38 8.14 -51.93 -0.42 -0.05 16 41 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 42 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 43 H 0.06 0.36 7.87 -51.93 -0.41 -0.05 16 44 H 0.07 0.26 8.14 -51.93 -0.42 -0.17 16 45 H 0.07 0.25 8.14 -51.93 -0.42 -0.17 16 46 H 0.07 0.24 8.14 -51.93 -0.42 -0.18 16 47 H 0.07 0.37 5.43 -51.93 -0.28 0.09 16 LS Contribution 383.00 15.07 5.77 5.77 Total: -1.00 -34.93 383.00 -10.02 -44.95 By element: Atomic # 1 Polarization: 6.54 SS G_CDS: -7.64 Total: -1.10 kcal Atomic # 6 Polarization: -7.47 SS G_CDS: -0.74 Total: -8.21 kcal Atomic # 7 Polarization: -31.92 SS G_CDS: 0.49 Total: -31.43 kcal Atomic # 8 Polarization: -20.26 SS G_CDS: -0.57 Total: -20.83 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.31 kcal Atomic # 16 Polarization: -3.15 SS G_CDS: -2.30 Total: -5.46 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -34.93 -10.02 -44.95 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000850150206.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -110.600 kcal (2) G-P(sol) polarization free energy of solvation -34.929 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.951 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds