Wall clock time and date at job start Sat Apr 11 2020 06:18:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31630 * 1 3 3 Si 1.86797 * 119.99856 * 2 1 4 4 H 1.48499 * 109.47162 * 269.99622 * 3 2 1 5 5 H 1.48495 * 109.47319 * 29.99988 * 3 2 1 6 6 H 1.48496 * 109.47148 * 150.00100 * 3 2 1 7 7 C 1.38800 * 120.00100 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00142 * 180.02562 * 7 2 1 9 9 S 1.76199 * 119.99987 * 0.02562 * 7 2 1 10 10 C 1.81000 * 100.00067 * 179.97438 * 9 7 2 11 11 C 1.52996 * 109.47160 * 179.97438 * 10 9 7 12 12 C 1.53002 * 109.47396 * 180.02562 * 11 10 9 13 13 O 1.45201 * 109.47365 * 180.02562 * 12 11 10 14 14 C 1.34228 * 116.99865 * 180.02562 * 13 12 11 15 15 O 1.20826 * 120.00180 * 359.97438 * 14 13 12 16 16 C 1.50697 * 119.99773 * 180.27776 * 14 13 12 17 17 H 1.09001 * 109.71106 * 336.04132 * 16 14 13 18 18 C 1.53182 * 109.71016 * 215.44849 * 16 14 13 19 19 C 1.50084 * 110.46891 * 193.43795 * 18 16 14 20 20 O 1.21277 * 118.04759 * 196.34599 * 19 18 16 21 21 N 1.33633 * 123.89985 * 16.37199 * 19 18 16 22 22 C 1.45372 * 123.18775 * 356.17925 * 21 19 18 23 23 H 1.08995 * 108.76725 * 264.20445 * 22 21 19 24 24 C 1.52717 * 111.69471 * 144.16563 * 22 21 19 25 25 C 1.53202 * 108.88520 * 176.76177 * 24 22 21 26 26 C 1.52896 * 109.95486 * 59.33242 * 25 24 22 27 27 C 1.53194 * 109.96575 * 301.07654 * 26 25 24 28 28 C 1.52770 * 108.87743 * 59.41790 * 27 26 25 29 29 H 1.08993 * 109.32746 * 58.67284 * 28 27 26 30 30 H 0.96996 * 120.00087 * 0.02562 * 1 2 3 31 31 H 1.09002 * 109.46426 * 60.00247 * 10 9 7 32 32 H 1.08992 * 109.47320 * 300.00466 * 10 9 7 33 33 H 1.09004 * 109.47521 * 60.00024 * 11 10 9 34 34 H 1.09004 * 109.47456 * 300.00782 * 11 10 9 35 35 H 1.09002 * 109.46676 * 59.99951 * 12 11 10 36 36 H 1.09001 * 109.46641 * 300.00327 * 12 11 10 37 37 H 1.08993 * 109.30267 * 313.74558 * 18 16 14 38 38 H 1.09001 * 109.30143 * 73.13388 * 18 16 14 39 39 H 0.96998 * 118.40633 * 176.21407 * 21 19 18 40 40 H 1.08998 * 109.56875 * 296.59079 * 24 22 21 41 41 H 1.09002 * 109.56216 * 56.94726 * 24 22 21 42 42 H 1.08999 * 109.39134 * 179.47462 * 25 24 22 43 43 H 1.08991 * 109.39603 * 299.28028 * 25 24 22 44 44 H 1.09000 * 109.38777 * 61.22078 * 26 25 24 45 45 H 1.08995 * 109.39060 * 181.02035 * 26 25 24 46 46 H 1.09002 * 109.57210 * 179.24073 * 27 26 25 47 47 H 1.09006 * 109.57054 * 299.59926 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4477 2.6526 0.7000 6 1 3.5478 1.4402 0.7000 7 6 2.0103 -1.2020 0.0005 8 1 3.0902 -1.2020 0.0010 9 16 1.1293 -2.7280 0.0005 10 6 2.5159 -3.8914 0.0005 11 6 1.9794 -5.3242 0.0012 12 6 3.1514 -6.3077 0.0018 13 8 2.6422 -7.6675 0.0018 14 6 3.5486 -8.6576 0.0029 15 8 4.7283 -8.3967 0.0033 16 6 3.0947 -10.0946 -0.0034 17 1 2.0880 -10.1639 0.4087 18 6 4.0556 -10.9435 0.8347 19 6 3.8219 -12.4044 0.5822 20 8 4.2793 -13.2004 1.3747 21 7 3.1402 -12.8802 -0.4640 22 6 2.4774 -12.0269 -1.4366 23 1 1.4290 -11.9247 -1.1566 24 6 2.5545 -12.6111 -2.8455 25 6 1.7700 -11.7063 -3.8011 26 6 2.3588 -10.2953 -3.7851 27 6 2.3059 -9.7225 -2.3653 28 6 3.1054 -10.6328 -1.4348 29 1 4.1337 -10.6981 -1.7901 30 1 -0.4850 0.8400 -0.0004 31 1 3.1244 -3.7313 0.8906 32 1 3.1245 -3.7313 -0.8893 33 1 1.3705 -5.4847 -0.8886 34 1 1.3709 -5.4840 0.8913 35 1 3.7599 -6.1472 0.8918 36 1 3.7601 -6.1480 -0.8882 37 1 5.0827 -10.6920 0.5705 38 1 3.8962 -10.7305 1.8918 39 1 3.0845 -13.8416 -0.5799 40 1 3.5959 -12.6619 -3.1631 41 1 2.1203 -13.6108 -2.8504 42 1 1.8275 -12.1109 -4.8116 43 1 0.7273 -11.6652 -3.4865 44 1 3.3948 -10.3318 -4.1221 45 1 1.7832 -9.6554 -4.4537 46 1 2.7392 -8.7223 -2.3587 47 1 1.2701 -9.6756 -2.0289 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000850150207.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:38 Heat of formation + Delta-G solvation = -163.577353 kcal Electronic energy + Delta-G solvation = -27355.889039 eV Core-core repulsion = 23435.034648 eV Total energy + Delta-G solvation = -3920.854391 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.149 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.69964 -40.23157 -38.69618 -36.95409 -35.06194 -34.33486 -33.48866 -32.47307 -30.50885 -29.71093 -27.25690 -25.75716 -25.14710 -23.35365 -23.25592 -21.42644 -21.01366 -20.64678 -19.65690 -17.93783 -17.56906 -17.42160 -17.22273 -16.58392 -16.35036 -15.68410 -15.36766 -14.84750 -14.77122 -14.64989 -14.53777 -14.41634 -14.12461 -13.70763 -13.51395 -13.20505 -12.96553 -12.78917 -12.63557 -12.37629 -12.16055 -12.01624 -11.95874 -11.50384 -11.38833 -11.19984 -11.08525 -11.04687 -11.01308 -10.94848 -10.84534 -10.71033 -10.62681 -10.35838 -10.19000 -9.66404 -9.53964 -9.10578 -8.39654 -6.60078 -6.27812 -3.99094 1.91639 2.21558 2.36310 2.76793 3.18820 3.19754 3.26677 3.48887 3.77336 3.91389 3.97534 4.16216 4.17682 4.45127 4.46014 4.48909 4.67035 4.72711 4.75654 4.82617 4.88299 4.93558 5.04106 5.08988 5.11435 5.16246 5.26986 5.31398 5.34573 5.39589 5.42313 5.52045 5.55572 5.59688 5.69970 5.71702 5.74344 5.84204 5.91866 6.10028 6.31316 6.35986 6.39502 6.61615 6.83995 7.55252 7.56248 7.75963 8.31862 9.18708 10.80317 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.020191 B = 0.001945 C = 0.001836 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1386.415699 B =14393.772072 C =15248.074316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.869 5.869 2 C 0.071 3.929 3 Si 0.920 3.080 4 H -0.277 1.277 5 H -0.282 1.282 6 H -0.272 1.272 7 C -0.518 4.518 8 H 0.073 0.927 9 S -0.124 6.124 10 C -0.115 4.115 11 C -0.097 4.097 12 C 0.071 3.929 13 O -0.350 6.350 14 C 0.470 3.530 15 O -0.505 6.505 16 C -0.081 4.081 17 H 0.114 0.886 18 C -0.127 4.127 19 C 0.528 3.472 20 O -0.551 6.551 21 N -0.716 5.716 22 C 0.145 3.855 23 H 0.079 0.921 24 C -0.126 4.126 25 C -0.117 4.117 26 C -0.122 4.122 27 C -0.116 4.116 28 C -0.089 4.089 29 H 0.090 0.910 30 H 0.268 0.732 31 H 0.064 0.936 32 H 0.064 0.936 33 H 0.078 0.922 34 H 0.078 0.922 35 H 0.071 0.929 36 H 0.071 0.929 37 H 0.119 0.881 38 H 0.110 0.890 39 H 0.402 0.598 40 H 0.072 0.928 41 H 0.073 0.927 42 H 0.070 0.930 43 H 0.068 0.932 44 H 0.064 0.936 45 H 0.072 0.928 46 H 0.073 0.927 47 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.323 -26.835 -6.661 27.848 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.505 5.505 2 C -0.138 4.138 3 Si 0.746 3.254 4 H -0.202 1.202 5 H -0.207 1.207 6 H -0.197 1.197 7 C -0.667 4.667 8 H 0.092 0.908 9 S 0.105 5.895 10 C -0.263 4.263 11 C -0.136 4.136 12 C -0.004 4.004 13 O -0.266 6.266 14 C 0.312 3.688 15 O -0.392 6.392 16 C -0.101 4.101 17 H 0.132 0.868 18 C -0.166 4.166 19 C 0.315 3.685 20 O -0.429 6.429 21 N -0.368 5.368 22 C 0.040 3.960 23 H 0.097 0.903 24 C -0.165 4.165 25 C -0.155 4.155 26 C -0.160 4.160 27 C -0.154 4.154 28 C -0.108 4.108 29 H 0.108 0.892 30 H 0.078 0.922 31 H 0.083 0.917 32 H 0.082 0.918 33 H 0.097 0.903 34 H 0.097 0.903 35 H 0.089 0.911 36 H 0.089 0.911 37 H 0.137 0.863 38 H 0.128 0.872 39 H 0.238 0.762 40 H 0.091 0.909 41 H 0.092 0.908 42 H 0.088 0.912 43 H 0.087 0.913 44 H 0.083 0.917 45 H 0.090 0.910 46 H 0.091 0.909 47 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 2.638 -26.945 -6.195 27.774 hybrid contribution 1.966 1.164 -0.085 2.287 sum 4.604 -25.781 -6.280 26.931 Atomic orbital electron populations 1.70013 1.05924 1.27439 1.47085 1.25020 0.95106 0.99142 0.94507 0.86145 0.79447 0.81424 0.78398 1.20237 1.20722 1.19656 1.22689 0.94580 0.90651 1.58737 0.90842 1.84649 1.08746 0.99260 1.96887 1.23179 1.03469 0.96350 1.03336 1.21284 0.96391 0.91560 1.04334 1.23315 0.97850 0.76526 1.02673 1.86503 1.40106 1.16915 1.83102 1.23205 0.84719 0.88349 0.72506 1.90682 1.18581 1.84928 1.45051 1.21121 1.02536 0.88307 0.98117 0.86830 1.21655 1.02379 0.90073 1.02535 1.19965 0.77082 0.91057 0.80363 1.90788 1.50107 1.57331 1.44702 1.45560 1.54249 1.10715 1.26305 1.20853 0.96758 0.89246 0.89182 0.90317 1.21831 1.02010 0.99500 0.93123 1.21512 0.99751 0.94881 0.99315 1.21575 1.01723 0.96124 0.96534 1.21636 1.01039 0.98370 0.94370 1.21413 1.02175 0.94555 0.92696 0.89161 0.92230 0.91743 0.91753 0.90325 0.90322 0.91061 0.91109 0.86334 0.87168 0.76201 0.90922 0.90843 0.91156 0.91292 0.91727 0.90979 0.90878 0.90311 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.52 13.22 55.49 0.73 -24.79 16 2 C 0.07 2.00 5.49 -17.43 -0.10 1.90 16 3 Si 0.92 21.23 29.55 -169.99 -5.02 16.21 16 4 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 5 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 6 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 7 C -0.52 -14.57 9.50 30.94 0.29 -14.27 16 8 H 0.07 2.00 7.80 -52.49 -0.41 1.59 16 9 S -0.12 -3.13 21.44 -107.50 -2.30 -5.44 16 10 C -0.11 -2.20 5.67 37.16 0.21 -1.99 16 11 C -0.10 -1.48 5.60 -26.73 -0.15 -1.63 16 12 C 0.07 0.94 5.47 37.16 0.20 1.15 16 13 O -0.35 -4.20 9.93 -39.25 -0.39 -4.59 16 14 C 0.47 5.21 5.62 36.00 0.20 5.41 16 15 O -0.50 -6.97 15.79 -18.75 -0.30 -7.26 16 16 C -0.08 -0.63 2.38 -91.71 -0.22 -0.85 16 17 H 0.11 0.73 8.13 -51.93 -0.42 0.31 16 18 C -0.13 -1.07 5.22 -28.09 -0.15 -1.22 16 19 C 0.53 4.96 7.71 -11.79 -0.09 4.86 16 20 O -0.55 -7.43 17.78 5.56 0.10 -7.34 16 21 N -0.72 -4.58 5.24 -55.21 -0.29 -4.87 16 22 C 0.14 0.70 2.71 -68.73 -0.19 0.52 16 23 H 0.08 0.34 8.13 -51.93 -0.42 -0.08 16 24 C -0.13 -0.46 5.60 -26.77 -0.15 -0.61 16 25 C -0.12 -0.44 5.91 -26.68 -0.16 -0.60 16 26 C -0.12 -0.63 5.90 -26.68 -0.16 -0.78 16 27 C -0.12 -0.74 4.93 -26.75 -0.13 -0.87 16 28 C -0.09 -0.57 1.53 -90.82 -0.14 -0.70 16 29 H 0.09 0.64 8.11 -51.93 -0.42 0.22 16 30 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 31 H 0.06 1.23 8.14 -51.91 -0.42 0.80 16 32 H 0.06 1.21 8.14 -51.92 -0.42 0.79 16 33 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 34 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 35 H 0.07 0.95 8.13 -51.93 -0.42 0.53 16 36 H 0.07 0.92 8.13 -51.93 -0.42 0.50 16 37 H 0.12 1.09 7.39 -51.93 -0.38 0.71 16 38 H 0.11 0.90 8.14 -51.93 -0.42 0.47 16 39 H 0.40 2.18 8.71 -40.82 -0.36 1.82 16 40 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 41 H 0.07 0.20 8.14 -51.93 -0.42 -0.23 16 42 H 0.07 0.23 8.14 -51.93 -0.42 -0.19 16 43 H 0.07 0.24 8.14 -51.93 -0.42 -0.18 16 44 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 45 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 46 H 0.07 0.60 6.95 -51.93 -0.36 0.24 16 47 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 LS Contribution 391.01 15.07 5.89 5.89 Total: -1.00 -33.72 391.01 -10.12 -43.84 By element: Atomic # 1 Polarization: 5.87 SS G_CDS: -7.83 Total: -1.96 kcal Atomic # 6 Polarization: -8.98 SS G_CDS: -0.71 Total: -9.69 kcal Atomic # 7 Polarization: -30.11 SS G_CDS: 0.44 Total: -29.66 kcal Atomic # 8 Polarization: -18.60 SS G_CDS: -0.59 Total: -19.19 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Atomic # 16 Polarization: -3.13 SS G_CDS: -2.30 Total: -5.44 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -33.72 -10.12 -43.84 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000850150207.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -119.736 kcal (2) G-P(sol) polarization free energy of solvation -33.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.842 kcal (6) G-S(sol) free energy of system = (1) + (5) -163.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds