Wall clock time and date at job start Sat Apr 11 2020 06:18:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31561 * 1 3 3 Si 1.86794 * 120.00407 * 2 1 4 4 H 1.48498 * 109.47320 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.47234 * 300.00485 * 3 2 1 6 6 H 1.48506 * 109.46646 * 60.00118 * 3 2 1 7 7 C 1.38653 * 119.99594 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99879 * 179.97438 * 7 2 1 9 9 O 1.34831 * 120.00071 * 359.97438 * 7 2 1 10 10 C 1.35754 * 117.00254 * 185.05271 * 9 7 2 11 11 C 1.38881 * 120.06322 * 354.46880 * 10 9 7 12 12 C 1.38105 * 119.92533 * 179.97438 * 11 10 9 13 13 C 1.38302 * 120.07084 * 359.97438 * 12 11 10 14 14 C 1.50696 * 119.93047 * 180.02562 * 13 12 11 15 15 C 1.50702 * 109.47683 * 89.99668 * 14 13 12 16 16 O 1.21278 * 119.99705 * 359.97438 * 15 14 13 17 17 N 1.34768 * 119.99984 * 180.02562 * 15 14 13 18 18 C 1.46501 * 120.00019 * 180.02562 * 17 15 14 19 19 H 1.09002 * 109.52351 * 325.08013 * 18 17 15 20 20 C 1.53116 * 109.49773 * 204.99682 * 18 17 15 21 21 C 1.53287 * 109.66566 * 170.16206 * 20 18 17 22 22 N 1.46361 * 108.75161 * 50.77743 * 21 20 18 23 23 C 1.34406 * 128.46168 * 162.64486 * 22 21 20 24 24 N 1.30781 * 108.55592 * 180.17811 * 23 22 21 25 25 C 1.34430 * 109.31875 * 359.93624 * 24 23 22 26 26 C 1.33861 * 107.79996 * 359.97438 * 25 24 23 27 27 C 1.50706 * 128.68360 * 180.09323 * 26 25 24 28 28 C 1.38302 * 120.13601 * 0.27030 * 13 12 11 29 29 C 1.38099 * 120.07255 * 359.49620 * 28 13 12 30 30 H 0.97005 * 119.99135 * 0.02562 * 1 2 3 31 31 H 1.08000 * 120.03697 * 359.95438 * 11 10 9 32 32 H 1.07999 * 119.96247 * 180.02562 * 12 11 10 33 33 H 1.09003 * 109.46959 * 329.98906 * 14 13 12 34 34 H 1.09004 * 109.46678 * 209.99796 * 14 13 12 35 35 H 0.97007 * 120.00194 * 359.97438 * 17 15 14 36 36 H 1.08993 * 109.43380 * 290.20180 * 20 18 17 37 37 H 1.09001 * 109.43092 * 50.11666 * 20 18 17 38 38 H 1.09006 * 109.60082 * 170.50513 * 21 20 18 39 39 H 1.09005 * 109.59773 * 290.97567 * 21 20 18 40 40 H 1.08006 * 125.72370 * 0.15224 * 23 22 21 41 41 H 1.08003 * 126.09797 * 180.02562 * 25 24 23 42 42 H 1.08998 * 109.74503 * 44.61913 * 27 26 25 43 43 H 1.08999 * 109.74534 * 283.89399 * 27 26 25 44 44 H 1.07999 * 119.96378 * 179.72369 * 28 13 12 45 45 H 1.08002 * 120.03677 * 180.25255 * 29 28 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2497 1.6176 0.0000 4 1 3.7097 1.3462 0.0006 5 1 1.8909 2.3964 -1.2124 6 1 1.8909 2.3963 1.2126 7 6 2.0088 -1.2008 -0.0005 8 1 3.0888 -1.2009 -0.0010 9 8 1.3346 -2.3684 -0.0005 10 6 2.0698 -3.5047 0.1055 11 6 3.4570 -3.4396 0.0920 12 6 4.2022 -4.5973 0.2005 13 6 3.5684 -5.8204 0.3231 14 6 4.3846 -7.0816 0.4419 15 6 4.6641 -7.3642 1.8955 16 8 4.2424 -6.6149 2.7509 17 7 5.3835 -8.4489 2.2449 18 6 5.6547 -8.7239 3.6581 19 1 5.7872 -7.7836 4.1933 20 6 6.9283 -9.5651 3.7798 21 6 7.3526 -9.6490 5.2504 22 7 6.1995 -10.0654 6.0497 23 6 6.1837 -10.5649 7.2974 24 7 4.9432 -10.8076 7.6329 25 6 4.1330 -10.4705 6.6146 26 6 4.8981 -10.0046 5.6199 27 6 4.4758 -9.4966 4.2653 28 6 2.1871 -5.8889 0.3317 29 6 1.4363 -4.7345 0.2284 30 1 -0.4849 0.8402 -0.0004 31 1 3.9525 -2.4847 -0.0036 32 1 5.2810 -4.5473 0.1905 33 1 5.3268 -6.9562 -0.0917 34 1 3.8305 -7.9150 0.0097 35 1 5.7211 -9.0481 1.5608 36 1 6.7378 -10.5686 3.3997 37 1 7.7256 -9.1021 3.1982 38 1 8.1543 -10.3796 5.3585 39 1 7.6977 -8.6715 5.5876 40 1 7.0503 -10.7375 7.9186 41 1 3.0567 -10.5588 6.6017 42 1 3.6166 -8.8345 4.3718 43 1 4.2164 -10.3369 3.6213 44 1 1.6951 -6.8460 0.4231 45 1 0.3577 -4.7883 0.2393 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000857944697.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:42 Heat of formation + Delta-G solvation = 22.413344 kcal Electronic energy + Delta-G solvation = -28034.668760 eV Core-core repulsion = 24018.728331 eV Total energy + Delta-G solvation = -4015.940429 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.62505 -40.01276 -38.87200 -37.31219 -36.36872 -34.37933 -32.62006 -32.28334 -31.28151 -30.52521 -30.13048 -27.87987 -26.51034 -25.18400 -24.63056 -22.50302 -21.95699 -21.75010 -20.97002 -20.21741 -19.47779 -17.96084 -17.65781 -17.04134 -16.88640 -16.70429 -15.73680 -15.45056 -14.74700 -14.61618 -14.42510 -14.41297 -14.25514 -14.15449 -13.95893 -13.74917 -13.54793 -13.41505 -13.33252 -12.70450 -12.64786 -12.59148 -12.33740 -11.92697 -11.71546 -11.54018 -11.46201 -11.25919 -10.84863 -10.75081 -10.58780 -10.40616 -10.28216 -9.84152 -9.77730 -9.31669 -9.29754 -8.80508 -8.59811 -8.13299 -7.14623 -6.42717 -4.01172 1.76652 2.25030 2.27150 2.41648 2.68174 2.90348 2.97750 3.13951 3.15728 3.20790 3.93794 3.98675 4.04164 4.25135 4.41937 4.46901 4.54211 4.64040 4.73045 4.85878 4.99277 5.06672 5.10323 5.11169 5.18790 5.24968 5.30253 5.33634 5.51957 5.60117 5.62769 5.68799 5.73524 5.86263 6.05803 6.20815 6.23608 6.43655 6.47655 6.72037 6.90656 6.93145 7.07516 7.25437 7.34402 7.38385 7.47292 7.80324 7.85863 8.02698 8.23532 9.03114 9.73766 10.75487 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.018108 B = 0.001940 C = 0.001899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1545.895383 B =14426.793473 C =14741.825267 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.863 5.863 2 C 0.038 3.962 3 Si 0.941 3.059 4 H -0.267 1.267 5 H -0.276 1.276 6 H -0.276 1.276 7 C -0.390 4.390 8 H 0.092 0.908 9 O -0.178 6.178 10 C 0.157 3.843 11 C -0.233 4.233 12 C -0.057 4.057 13 C -0.172 4.172 14 C -0.079 4.079 15 C 0.510 3.490 16 O -0.514 6.514 17 N -0.738 5.738 18 C 0.144 3.856 19 H 0.093 0.907 20 C -0.141 4.141 21 C 0.108 3.892 22 N -0.460 5.460 23 C 0.181 3.819 24 N -0.496 5.496 25 C -0.023 4.023 26 C -0.017 4.017 27 C -0.057 4.057 28 C -0.059 4.059 29 C -0.191 4.191 30 H 0.269 0.731 31 H 0.126 0.874 32 H 0.103 0.897 33 H 0.092 0.908 34 H 0.093 0.907 35 H 0.399 0.601 36 H 0.080 0.920 37 H 0.095 0.905 38 H 0.097 0.903 39 H 0.089 0.911 40 H 0.204 0.796 41 H 0.170 0.830 42 H 0.095 0.905 43 H 0.084 0.916 44 H 0.108 0.892 45 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.225 -22.383 4.989 28.681 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.498 5.498 2 C -0.166 4.166 3 Si 0.766 3.234 4 H -0.191 1.191 5 H -0.202 1.202 6 H -0.201 1.201 7 C -0.467 4.467 8 H 0.110 0.890 9 O -0.082 6.082 10 C 0.103 3.897 11 C -0.252 4.252 12 C -0.075 4.075 13 C -0.173 4.173 14 C -0.118 4.118 15 C 0.297 3.703 16 O -0.387 6.387 17 N -0.391 5.391 18 C 0.038 3.962 19 H 0.111 0.889 20 C -0.180 4.180 21 C -0.015 4.015 22 N -0.144 5.144 23 C -0.101 4.101 24 N -0.214 5.214 25 C -0.170 4.170 26 C -0.131 4.131 27 C -0.096 4.096 28 C -0.078 4.078 29 C -0.210 4.210 30 H 0.079 0.921 31 H 0.144 0.856 32 H 0.121 0.879 33 H 0.110 0.890 34 H 0.111 0.889 35 H 0.233 0.767 36 H 0.099 0.901 37 H 0.114 0.886 38 H 0.115 0.885 39 H 0.107 0.893 40 H 0.221 0.779 41 H 0.187 0.813 42 H 0.114 0.886 43 H 0.102 0.898 44 H 0.126 0.874 45 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 16.349 -21.856 6.279 28.007 hybrid contribution 1.059 0.832 -0.943 1.644 sum 17.407 -21.024 5.336 27.812 Atomic orbital electron populations 1.70056 1.05939 1.27504 1.46268 1.25295 0.95858 0.98836 0.96631 0.85643 0.79118 0.80410 0.78226 1.19135 1.20166 1.20144 1.21373 0.91813 0.80834 1.52636 0.89040 1.83978 1.34376 1.11464 1.78340 1.19388 0.90292 0.88044 0.91976 1.21106 0.93822 0.98764 1.11502 1.20497 0.97971 0.91803 0.97231 1.18612 0.93202 0.92731 1.12758 1.20404 1.01238 0.98196 0.92012 1.21144 0.77144 0.79736 0.92300 1.90768 1.49144 1.46734 1.52083 1.46108 1.57444 1.28354 1.07215 1.20898 0.93013 0.98983 0.83273 0.88931 1.22143 0.98624 1.01920 0.95281 1.21903 0.87094 1.02001 0.90468 1.45419 1.06949 1.48136 1.13936 1.24791 0.97847 1.02346 0.85072 1.70506 1.00187 1.21921 1.28768 1.21871 0.99698 1.05326 0.90064 1.21089 0.83921 1.09094 0.98994 1.20640 0.99224 0.99933 0.89824 1.20396 0.92752 0.96706 0.97902 1.20162 0.99518 0.90300 1.11070 0.92102 0.85608 0.87904 0.89010 0.88897 0.76687 0.90101 0.88615 0.88519 0.89288 0.77917 0.81316 0.88649 0.89779 0.87380 0.86532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.66 13.67 55.48 0.76 -24.91 16 2 C 0.04 1.06 5.49 -17.51 -0.10 0.96 16 3 Si 0.94 20.85 29.55 -169.99 -5.02 15.83 16 4 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 5 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 6 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 7 C -0.39 -11.11 9.49 30.89 0.29 -10.82 16 8 H 0.09 2.42 5.20 -52.49 -0.27 2.15 16 9 O -0.18 -5.20 9.76 0.04 0.00 -5.19 16 10 C 0.16 3.89 6.65 -39.11 -0.26 3.63 16 11 C -0.23 -5.19 9.17 -39.39 -0.36 -5.55 16 12 C -0.06 -1.06 9.69 -39.61 -0.38 -1.44 16 13 C -0.17 -2.89 4.38 -104.58 -0.46 -3.35 16 14 C -0.08 -0.89 5.83 -29.04 -0.17 -1.06 16 15 C 0.51 6.25 7.79 -10.99 -0.09 6.17 16 16 O -0.51 -9.08 15.70 5.56 0.09 -8.99 16 17 N -0.74 -5.70 5.08 -53.51 -0.27 -5.97 16 18 C 0.14 1.13 2.47 -67.62 -0.17 0.96 16 19 H 0.09 1.00 7.55 -51.93 -0.39 0.61 16 20 C -0.14 -0.61 5.39 -26.52 -0.14 -0.75 16 21 C 0.11 0.48 6.99 -3.97 -0.03 0.45 16 22 N -0.46 -3.69 3.13 -114.16 -0.36 -4.05 16 23 C 0.18 1.60 12.66 -90.72 -1.15 0.46 16 24 N -0.50 -5.99 11.27 -14.87 -0.17 -6.16 16 25 C -0.02 -0.26 11.84 -17.95 -0.21 -0.47 16 26 C -0.02 -0.16 6.57 -81.73 -0.54 -0.70 16 27 C -0.06 -0.50 5.89 -27.63 -0.16 -0.66 16 28 C -0.06 -1.07 9.69 -39.61 -0.38 -1.46 16 29 C -0.19 -4.16 9.99 -39.40 -0.39 -4.56 16 30 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 31 H 0.13 2.81 5.64 -52.49 -0.30 2.51 16 32 H 0.10 1.62 8.06 -52.49 -0.42 1.20 16 33 H 0.09 0.82 8.08 -51.93 -0.42 0.40 16 34 H 0.09 0.82 8.08 -51.93 -0.42 0.40 16 35 H 0.40 1.74 8.61 -40.82 -0.35 1.39 16 36 H 0.08 0.30 8.11 -51.93 -0.42 -0.12 16 37 H 0.10 0.27 8.14 -51.93 -0.42 -0.15 16 38 H 0.10 0.20 8.14 -51.93 -0.42 -0.23 16 39 H 0.09 0.36 8.14 -51.93 -0.42 -0.06 16 40 H 0.20 1.00 8.06 -52.48 -0.42 0.57 16 41 H 0.17 1.66 8.06 -52.48 -0.42 1.24 16 42 H 0.10 1.05 8.14 -51.93 -0.42 0.62 16 43 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 44 H 0.11 1.63 8.06 -52.49 -0.42 1.20 16 45 H 0.12 2.45 8.06 -52.49 -0.42 2.03 16 LS Contribution 380.06 15.07 5.73 5.73 Total: -1.00 -37.50 380.06 -9.88 -47.38 By element: Atomic # 1 Polarization: 10.45 SS G_CDS: -5.94 Total: 4.52 kcal Atomic # 6 Polarization: -13.48 SS G_CDS: -4.70 Total: -18.18 kcal Atomic # 7 Polarization: -41.05 SS G_CDS: -0.04 Total: -41.09 kcal Atomic # 8 Polarization: -14.27 SS G_CDS: 0.09 Total: -14.19 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.02 Total: 15.83 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -37.50 -9.88 -47.38 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000857944697.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.794 kcal (2) G-P(sol) polarization free energy of solvation -37.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.293 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.880 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.380 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds