Wall clock time and date at job start Sat Apr 11 2020 06:18:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31561 * 1 3 3 Si 1.86807 * 119.99673 * 2 1 4 4 H 1.48496 * 109.46882 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.46928 * 300.00305 * 3 2 1 6 6 H 1.48501 * 109.46708 * 60.00421 * 3 2 1 7 7 C 1.38645 * 120.00090 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00199 * 179.97438 * 7 2 1 9 9 O 1.34831 * 120.00522 * 359.97438 * 7 2 1 10 10 C 1.35747 * 117.00245 * 185.05597 * 9 7 2 11 11 C 1.38900 * 120.07271 * 354.45848 * 10 9 7 12 12 C 1.38073 * 119.93357 * 179.97438 * 11 10 9 13 13 C 1.38326 * 120.06626 * 0.02562 * 12 11 10 14 14 C 1.38274 * 120.14387 * 359.97438 * 13 12 11 15 15 C 1.50694 * 119.96868 * 179.72116 * 14 13 12 16 16 C 1.50699 * 109.47382 * 89.99949 * 15 14 13 17 17 O 1.21277 * 119.99612 * 0.02562 * 16 15 14 18 18 N 1.34769 * 120.00194 * 179.97438 * 16 15 14 19 19 C 1.46501 * 120.00322 * 180.02562 * 18 16 15 20 20 H 1.09005 * 109.49418 * 35.00066 * 19 18 16 21 21 C 1.53110 * 109.50251 * 155.06700 * 19 18 16 22 22 C 1.53270 * 109.71425 * 189.83424 * 21 19 18 23 23 N 1.46479 * 108.71129 * 309.27859 * 22 21 19 24 24 C 1.34411 * 128.44160 * 197.34035 * 23 22 21 25 25 N 1.30784 * 108.55114 * 179.76470 * 24 23 22 26 26 C 1.34423 * 109.31908 * 0.07410 * 25 24 23 27 27 C 1.33855 * 107.80281 * 0.02562 * 26 25 24 28 28 C 1.50713 * 128.68252 * 179.90909 * 27 26 25 29 29 C 1.38130 * 120.06544 * 359.97438 * 14 13 12 30 30 H 0.97003 * 120.00205 * 359.97438 * 1 2 3 31 31 H 1.08002 * 120.02932 * 359.96272 * 11 10 9 32 32 H 1.07995 * 119.96615 * 179.97438 * 12 11 10 33 33 H 1.08005 * 119.92972 * 180.02562 * 13 12 11 34 34 H 1.09003 * 109.47246 * 210.00262 * 15 14 13 35 35 H 1.09008 * 109.47249 * 329.99742 * 15 14 13 36 36 H 0.97010 * 120.00430 * 0.02562 * 18 16 15 37 37 H 1.09001 * 109.43003 * 309.93644 * 21 19 18 38 38 H 1.08997 * 109.43230 * 69.78950 * 21 19 18 39 39 H 1.08997 * 109.60884 * 189.50312 * 22 21 19 40 40 H 1.08998 * 109.56990 * 69.03144 * 22 21 19 41 41 H 1.07997 * 125.72078 * 359.77238 * 24 23 22 42 42 H 1.07999 * 126.09444 * 180.02562 * 26 25 24 43 43 H 1.09007 * 109.74185 * 76.05048 * 28 27 26 44 44 H 1.08994 * 109.78406 * 315.35071 * 28 27 26 45 45 H 1.07999 * 120.03002 * 179.97438 * 29 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6178 0.0000 4 1 3.7095 1.3465 -0.0006 5 1 1.8907 2.3965 -1.2125 6 1 1.8908 2.3964 1.2126 7 6 2.0089 -1.2007 -0.0005 8 1 3.0889 -1.2007 -0.0010 9 8 1.3348 -2.3684 -0.0005 10 6 2.0702 -3.5045 0.1055 11 6 3.4576 -3.4394 0.0919 12 6 4.2027 -4.5967 0.2005 13 6 3.5689 -5.8202 0.3222 14 6 2.1880 -5.8884 0.3361 15 6 1.5015 -7.2240 0.4626 16 6 1.2805 -7.5393 1.9196 17 8 1.6442 -6.7563 2.7713 18 7 0.6779 -8.6908 2.2759 19 6 0.4625 -8.9971 3.6923 20 1 0.2476 -8.0765 4.2350 21 6 -0.7189 -9.9609 3.8329 22 6 -1.1051 -10.0932 5.3103 23 7 0.1001 -10.3957 6.0858 24 6 0.1895 -10.8965 7.3299 25 7 1.4543 -11.0164 7.6403 26 6 2.2071 -10.5961 6.6090 27 6 1.3804 -10.2041 5.6319 28 6 1.7240 -9.6509 4.2728 29 6 1.4369 -4.7341 0.2289 30 1 -0.4850 0.8400 0.0004 31 1 3.9530 -2.4845 -0.0037 32 1 5.2815 -4.5467 0.1895 33 1 4.1540 -6.7240 0.4074 34 1 0.5409 -7.1890 -0.0514 35 1 2.1255 -7.9972 0.0141 36 1 0.3866 -9.3170 1.5947 37 1 -1.5689 -9.5775 3.2684 38 1 -0.4373 -10.9391 3.4432 39 1 -1.8281 -10.9004 5.4285 40 1 -1.5391 -9.1563 5.6595 41 1 -0.6434 -11.1564 7.9664 42 1 3.2864 -10.5780 6.5749 43 1 2.0537 -10.4585 3.6191 44 1 2.5149 -8.9068 4.3665 45 1 0.3583 -4.7882 0.2394 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000857949348.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:44 Heat of formation + Delta-G solvation = 22.711885 kcal Electronic energy + Delta-G solvation = -28175.702125 eV Core-core repulsion = 24159.774642 eV Total energy + Delta-G solvation = -4015.927483 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.59851 -40.02014 -38.86425 -37.27648 -36.34998 -34.35633 -32.62677 -32.25651 -31.76251 -30.58655 -29.19288 -27.96920 -26.78150 -25.24399 -24.68556 -22.54723 -21.79827 -21.58506 -21.04231 -20.31670 -19.48491 -17.76157 -17.53323 -17.03437 -16.88973 -16.59284 -15.63506 -15.51411 -15.01037 -14.66485 -14.40626 -14.38748 -14.28360 -14.15786 -13.97389 -13.77704 -13.52481 -13.39611 -13.31250 -12.69371 -12.61208 -12.39485 -12.30829 -11.91052 -11.68455 -11.53325 -11.44806 -11.26082 -10.83419 -10.75011 -10.59464 -10.40534 -10.26420 -9.82943 -9.79013 -9.30605 -9.29250 -8.81144 -8.57828 -8.04609 -7.19041 -6.41503 -4.00364 1.79083 2.09752 2.41511 2.44216 2.68589 2.91723 2.98848 3.14602 3.16453 3.21580 3.97536 3.99520 4.08000 4.28413 4.43808 4.49639 4.55082 4.67571 4.75836 4.87318 4.94733 5.05376 5.09711 5.14693 5.18906 5.22344 5.24643 5.47572 5.53935 5.61654 5.66259 5.70060 5.77384 5.95277 6.08128 6.20125 6.22604 6.36121 6.49377 6.68086 6.92817 6.94046 7.10455 7.28385 7.33630 7.40105 7.46986 7.82265 7.85419 8.03841 8.23246 9.04628 9.75296 10.76928 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.016855 B = 0.002050 C = 0.001994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1660.834730 B =13654.095694 C =14038.704294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.865 5.865 2 C 0.038 3.962 3 Si 0.940 3.060 4 H -0.267 1.267 5 H -0.276 1.276 6 H -0.276 1.276 7 C -0.390 4.390 8 H 0.092 0.908 9 O -0.180 6.180 10 C 0.154 3.846 11 C -0.230 4.230 12 C -0.075 4.075 13 C -0.196 4.196 14 C -0.034 4.034 15 C -0.093 4.093 16 C 0.515 3.485 17 O -0.512 6.512 18 N -0.736 5.736 19 C 0.144 3.856 20 H 0.094 0.906 21 C -0.142 4.142 22 C 0.108 3.892 23 N -0.459 5.459 24 C 0.182 3.818 25 N -0.496 5.496 26 C -0.023 4.023 27 C -0.016 4.016 28 C -0.056 4.056 29 C -0.175 4.175 30 H 0.268 0.732 31 H 0.126 0.874 32 H 0.107 0.893 33 H 0.103 0.897 34 H 0.100 0.900 35 H 0.099 0.901 36 H 0.400 0.600 37 H 0.097 0.903 38 H 0.080 0.920 39 H 0.097 0.903 40 H 0.090 0.910 41 H 0.204 0.796 42 H 0.169 0.831 43 H 0.084 0.916 44 H 0.095 0.905 45 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.247 -23.610 5.217 24.284 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.500 5.500 2 C -0.166 4.166 3 Si 0.765 3.235 4 H -0.191 1.191 5 H -0.202 1.202 6 H -0.202 1.202 7 C -0.466 4.466 8 H 0.109 0.891 9 O -0.084 6.084 10 C 0.101 3.899 11 C -0.249 4.249 12 C -0.093 4.093 13 C -0.215 4.215 14 C -0.035 4.035 15 C -0.133 4.133 16 C 0.301 3.699 17 O -0.385 6.385 18 N -0.390 5.390 19 C 0.038 3.962 20 H 0.112 0.888 21 C -0.180 4.180 22 C -0.015 4.015 23 N -0.144 5.144 24 C -0.100 4.100 25 N -0.214 5.214 26 C -0.170 4.170 27 C -0.131 4.131 28 C -0.096 4.096 29 C -0.194 4.194 30 H 0.078 0.922 31 H 0.144 0.856 32 H 0.125 0.875 33 H 0.121 0.879 34 H 0.118 0.882 35 H 0.117 0.883 36 H 0.234 0.766 37 H 0.115 0.885 38 H 0.099 0.901 39 H 0.115 0.885 40 H 0.108 0.892 41 H 0.221 0.779 42 H 0.186 0.814 43 H 0.102 0.898 44 H 0.113 0.887 45 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -2.247 -23.054 6.499 24.058 hybrid contribution -0.040 0.805 -0.958 1.252 sum -2.287 -22.249 5.541 23.043 Atomic orbital electron populations 1.70051 1.05933 1.27436 1.46603 1.25277 0.95844 0.98790 0.96676 0.85653 0.79160 0.80448 0.78199 1.19109 1.20193 1.20167 1.21365 0.91812 0.80832 1.52586 0.89063 1.83971 1.34263 1.11383 1.78787 1.19275 0.90263 0.87978 0.92395 1.21184 0.93843 0.98975 1.10913 1.20684 0.98398 0.92312 0.97908 1.20344 0.93282 0.97003 1.10886 1.18641 0.93228 0.91892 0.99704 1.20591 1.02672 0.97229 0.92769 1.20839 0.76831 0.80370 0.91821 1.90783 1.48137 1.47250 1.52368 1.46046 1.63395 1.22343 1.07182 1.20909 0.93492 0.98637 0.83127 0.88823 1.22139 0.99577 1.01054 0.95230 1.21930 0.85628 1.03067 0.90849 1.45456 1.06724 1.48157 1.14054 1.24791 0.96962 1.02844 0.85430 1.70500 1.01164 1.21414 1.28361 1.21851 0.99622 1.05391 0.90168 1.21080 0.84181 1.08932 0.98891 1.20636 0.98879 1.00220 0.89842 1.19934 0.99015 0.89976 1.10513 0.92166 0.85615 0.87466 0.87936 0.88225 0.88303 0.76606 0.88498 0.90109 0.88459 0.89189 0.77911 0.81364 0.89791 0.88687 0.86889 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.74 13.67 55.48 0.76 -24.98 16 2 C 0.04 1.06 5.49 -17.52 -0.10 0.96 16 3 Si 0.94 20.92 29.55 -169.99 -5.02 15.90 16 4 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 5 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 6 H -0.28 -6.04 7.11 56.52 0.40 -5.63 16 7 C -0.39 -11.12 9.49 30.88 0.29 -10.83 16 8 H 0.09 2.42 5.20 -52.48 -0.27 2.15 16 9 O -0.18 -5.26 9.76 0.06 0.00 -5.26 16 10 C 0.15 3.84 6.65 -39.11 -0.26 3.58 16 11 C -0.23 -5.18 9.17 -39.40 -0.36 -5.54 16 12 C -0.07 -1.43 10.04 -39.61 -0.40 -1.83 16 13 C -0.20 -3.47 9.70 -39.54 -0.38 -3.86 16 14 C -0.03 -0.60 4.37 -104.65 -0.46 -1.06 16 15 C -0.09 -1.13 5.83 -29.04 -0.17 -1.30 16 16 C 0.51 6.70 7.79 -10.99 -0.09 6.61 16 17 O -0.51 -9.42 15.70 5.56 0.09 -9.34 16 18 N -0.74 -6.14 5.08 -53.51 -0.27 -6.41 16 19 C 0.14 1.21 2.47 -67.62 -0.17 1.04 16 20 H 0.09 1.08 7.56 -51.93 -0.39 0.68 16 21 C -0.14 -0.69 5.39 -26.53 -0.14 -0.83 16 22 C 0.11 0.54 7.00 -3.91 -0.03 0.51 16 23 N -0.46 -3.85 3.13 -114.09 -0.36 -4.21 16 24 C 0.18 1.66 12.66 -90.71 -1.15 0.51 16 25 N -0.50 -6.07 11.27 -14.87 -0.17 -6.24 16 26 C -0.02 -0.27 11.84 -17.96 -0.21 -0.48 16 27 C -0.02 -0.16 6.57 -81.73 -0.54 -0.70 16 28 C -0.06 -0.51 5.89 -27.63 -0.16 -0.67 16 29 C -0.18 -3.78 9.65 -39.39 -0.38 -4.16 16 30 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 31 H 0.13 2.83 5.64 -52.49 -0.30 2.53 16 32 H 0.11 1.72 8.06 -52.49 -0.42 1.30 16 33 H 0.10 1.52 8.06 -52.48 -0.42 1.10 16 34 H 0.10 1.01 8.08 -51.93 -0.42 0.59 16 35 H 0.10 0.89 8.09 -51.92 -0.42 0.47 16 36 H 0.40 1.96 8.60 -40.82 -0.35 1.61 16 37 H 0.10 0.35 8.14 -51.93 -0.42 -0.07 16 38 H 0.08 0.33 8.11 -51.93 -0.42 -0.09 16 39 H 0.10 0.25 8.14 -51.93 -0.42 -0.18 16 40 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 41 H 0.20 1.06 8.06 -52.49 -0.42 0.64 16 42 H 0.17 1.65 8.06 -52.49 -0.42 1.23 16 43 H 0.08 0.63 8.14 -51.92 -0.42 0.21 16 44 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 45 H 0.11 2.35 8.06 -52.49 -0.42 1.93 16 LS Contribution 380.07 15.07 5.73 5.73 Total: -1.00 -37.77 380.07 -9.88 -47.65 By element: Atomic # 1 Polarization: 11.13 SS G_CDS: -5.94 Total: 5.19 kcal Atomic # 6 Polarization: -13.33 SS G_CDS: -4.70 Total: -18.03 kcal Atomic # 7 Polarization: -41.80 SS G_CDS: -0.04 Total: -41.84 kcal Atomic # 8 Polarization: -14.68 SS G_CDS: 0.09 Total: -14.59 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -37.77 -9.88 -47.65 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000857949348.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.360 kcal (2) G-P(sol) polarization free energy of solvation -37.769 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.879 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.648 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.712 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds