Wall clock time and date at job start Sat Apr 11 2020 06:18:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30826 * 1 3 3 Si 1.86803 * 119.99557 * 2 1 4 4 H 1.48497 * 109.46950 * 274.66129 * 3 2 1 5 5 H 1.48494 * 109.47176 * 34.66389 * 3 2 1 6 6 H 1.48499 * 109.47141 * 154.66438 * 3 2 1 7 7 C 1.39948 * 120.00311 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99783 * 162.23425 * 7 2 1 9 9 C 1.41388 * 119.99746 * 342.23409 * 7 2 1 10 10 C 1.40719 * 120.24247 * 155.29087 * 9 7 2 11 11 C 1.37616 * 119.74696 * 180.02562 * 10 9 7 12 12 C 1.38634 * 120.24626 * 0.02562 * 11 10 9 13 13 C 1.50708 * 119.74647 * 179.97438 * 12 11 10 14 14 N 1.46493 * 109.47323 * 90.00046 * 13 12 11 15 15 C 1.34776 * 120.00096 * 180.02562 * 14 13 12 16 16 O 1.21608 * 119.99945 * 359.97438 * 15 14 13 17 17 C 1.47432 * 120.00008 * 179.97438 * 15 14 13 18 18 C 1.38038 * 126.41541 * 0.04384 * 17 15 14 19 19 N 1.34261 * 107.41743 * 179.97438 * 18 17 15 20 20 H 0.96994 * 125.75546 * 180.02562 * 19 18 17 21 21 N 1.39933 * 108.49137 * 359.97438 * 19 18 17 22 22 C 1.30446 * 108.89832 * 0.02562 * 21 19 18 23 23 C 1.50704 * 125.99210 * 179.97438 * 22 21 19 24 24 H 1.08997 * 109.87478 * 164.32528 * 23 22 21 25 25 C 1.54100 * 109.87398 * 285.33001 * 23 22 21 26 26 C 1.54813 * 104.18811 * 121.45448 * 25 23 22 27 27 C 1.55001 * 102.09193 * 20.87677 * 26 25 23 28 28 O 1.43743 * 109.87736 * 43.31199 * 23 22 21 29 29 C 1.38629 * 120.50360 * 0.25015 * 12 11 10 30 30 C 1.37617 * 120.24787 * 359.45215 * 29 12 11 31 31 H 0.96992 * 119.99968 * 359.97438 * 1 2 3 32 32 H 1.07998 * 120.12747 * 0.03795 * 10 9 7 33 33 H 1.07999 * 119.87920 * 179.97438 * 11 10 9 34 34 H 1.08995 * 109.46765 * 329.99295 * 13 12 11 35 35 H 1.09005 * 109.46321 * 209.99991 * 13 12 11 36 36 H 0.96998 * 120.00213 * 359.97438 * 14 13 12 37 37 H 1.07998 * 126.29291 * 359.97438 * 18 17 15 38 38 H 1.09007 * 110.48600 * 240.12194 * 25 23 22 39 39 H 1.08995 * 110.49388 * 2.64520 * 25 23 22 40 40 H 1.09002 * 110.90853 * 139.07433 * 26 25 23 41 41 H 1.09000 * 110.90903 * 262.68401 * 26 25 23 42 42 H 1.09004 * 110.61840 * 81.47662 * 27 26 25 43 43 H 1.08999 * 110.61722 * 204.47561 * 27 26 25 44 44 H 1.07999 * 119.87905 * 179.70116 * 29 12 11 45 45 H 1.08000 * 120.13021 * 180.26491 * 30 29 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 2.3911 2.1034 -1.3954 5 1 1.4923 2.6222 0.7963 6 1 3.5855 1.4139 0.5991 7 6 2.0081 -1.2119 0.0005 8 1 3.0494 -1.2343 -0.2848 9 6 1.3517 -2.4070 0.3747 10 6 1.8220 -3.6493 -0.0899 11 6 1.1751 -4.8061 0.2803 12 6 0.0637 -4.7507 1.1071 13 6 -0.6366 -6.0246 1.5049 14 7 -0.0448 -6.5415 2.7413 15 6 -0.5141 -7.6804 3.2883 16 8 -1.4292 -8.2786 2.7557 17 6 0.0818 -8.2010 4.5322 18 6 1.1184 -7.6324 5.2447 19 7 1.3537 -8.4179 6.3078 20 1 2.0290 -8.2650 6.9871 21 7 0.4595 -9.4936 6.2714 22 6 -0.3019 -9.3747 5.2189 23 6 -1.3983 -10.3231 4.8073 24 1 -2.0407 -9.8476 4.0661 25 6 -0.7854 -11.6098 4.2212 26 6 -1.3377 -12.7389 5.1249 27 6 -2.5882 -12.0711 5.7514 28 8 -2.1747 -10.7010 5.9565 29 6 -0.4119 -3.5321 1.5661 30 6 0.2229 -2.3631 1.2138 31 1 -0.4850 0.8400 0.0004 32 1 2.6875 -3.6947 -0.7342 33 1 1.5339 -5.7606 -0.0754 34 1 -0.5246 -6.7636 0.7117 35 1 -1.6955 -5.8219 1.6659 36 1 0.6854 -6.0646 3.1659 37 1 1.6437 -6.7229 4.9932 38 1 -1.1110 -11.7524 3.1907 39 1 0.3026 -11.5730 4.2750 40 1 -1.6177 -13.6098 4.5321 41 1 -0.6149 -13.0099 5.8944 42 1 -3.4327 -12.1161 5.0636 43 1 -2.8400 -12.5427 6.7013 44 1 -1.2814 -3.5004 2.2059 45 1 -0.1466 -1.4151 1.5759 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000869062463.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:56 Heat of formation + Delta-G solvation = 0.708011 kcal Electronic energy + Delta-G solvation = -28126.021376 eV Core-core repulsion = 24109.139733 eV Total energy + Delta-G solvation = -4016.881643 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.62280 -39.24423 -38.95575 -37.62633 -34.73561 -33.47515 -32.70461 -32.05271 -31.05972 -29.85835 -29.36480 -28.77756 -26.83338 -24.05367 -23.71275 -22.63956 -21.81588 -21.10196 -20.30398 -20.08821 -19.75868 -18.50839 -17.41475 -16.48281 -16.39868 -16.15570 -15.55098 -15.31696 -15.24360 -15.10550 -14.42387 -14.24972 -13.88734 -13.76202 -13.71792 -13.51781 -13.25269 -12.98269 -12.56897 -12.06705 -11.96382 -11.90581 -11.80781 -11.62032 -11.45153 -11.23214 -11.12324 -11.07745 -10.92579 -10.64681 -10.57878 -10.06144 -9.80787 -9.71043 -9.52020 -9.45861 -9.23497 -9.01553 -8.56894 -7.59611 -7.47606 -6.89119 -4.48831 1.39317 1.98158 2.48294 2.57492 2.95446 2.99833 3.00420 3.06564 3.52911 3.73202 3.83146 3.85990 4.22003 4.43604 4.51676 4.58649 4.70674 4.79082 4.99659 5.14718 5.24981 5.32421 5.45374 5.51737 5.57052 5.58944 5.73001 5.82829 5.84146 5.92328 5.97392 6.18154 6.23193 6.31096 6.36213 6.72820 6.83572 6.84477 6.91687 6.95554 7.16094 7.24224 7.36972 7.48817 7.68638 7.92938 7.94759 7.99962 8.17148 8.51180 8.55434 8.76347 8.84131 10.04982 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.025527 B = 0.001966 C = 0.001914 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1096.628651 B =14238.498966 C =14624.280592 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.786 5.786 2 C 0.075 3.925 3 Si 0.908 3.092 4 H -0.270 1.270 5 H -0.275 1.275 6 H -0.260 1.260 7 C -0.459 4.459 8 H 0.079 0.921 9 C 0.116 3.884 10 C -0.230 4.230 11 C -0.070 4.070 12 C -0.245 4.245 13 C 0.186 3.814 14 N -0.714 5.714 15 C 0.586 3.414 16 O -0.553 6.553 17 C -0.276 4.276 18 C 0.105 3.895 19 N -0.462 5.462 20 H 0.444 0.556 21 N -0.277 5.277 22 C 0.130 3.870 23 C 0.148 3.852 24 H 0.119 0.881 25 C -0.141 4.141 26 C -0.153 4.153 27 C 0.046 3.954 28 O -0.367 6.367 29 C -0.081 4.081 30 C -0.170 4.170 31 H 0.282 0.718 32 H 0.092 0.908 33 H 0.088 0.912 34 H 0.059 0.941 35 H 0.060 0.940 36 H 0.396 0.604 37 H 0.190 0.810 38 H 0.084 0.916 39 H 0.076 0.924 40 H 0.080 0.920 41 H 0.076 0.924 42 H 0.063 0.937 43 H 0.092 0.908 44 H 0.088 0.912 45 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.123 -16.033 10.619 19.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.411 5.411 2 C -0.143 4.143 3 Si 0.732 3.268 4 H -0.195 1.195 5 H -0.199 1.199 6 H -0.184 1.184 7 C -0.488 4.488 8 H 0.097 0.903 9 C 0.114 3.886 10 C -0.250 4.250 11 C -0.089 4.089 12 C -0.247 4.247 13 C 0.064 3.936 14 N -0.364 5.364 15 C 0.373 3.627 16 O -0.433 6.433 17 C -0.291 4.291 18 C -0.048 4.048 19 N -0.167 5.167 20 H 0.289 0.711 21 N -0.099 5.099 22 C -0.038 4.038 23 C 0.089 3.911 24 H 0.136 0.864 25 C -0.179 4.179 26 C -0.191 4.191 27 C -0.031 4.031 28 O -0.285 6.285 29 C -0.100 4.100 30 C -0.189 4.189 31 H 0.093 0.907 32 H 0.111 0.889 33 H 0.106 0.894 34 H 0.077 0.923 35 H 0.078 0.922 36 H 0.230 0.770 37 H 0.206 0.794 38 H 0.103 0.897 39 H 0.094 0.906 40 H 0.099 0.901 41 H 0.095 0.905 42 H 0.081 0.919 43 H 0.110 0.890 44 H 0.107 0.893 45 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 0.458 -16.846 11.399 20.345 hybrid contribution 1.097 1.718 -0.368 2.072 sum 1.555 -15.127 11.031 18.786 Atomic orbital electron populations 1.69820 1.07645 1.29483 1.34156 1.25956 0.94745 1.01484 0.92150 0.86302 0.80748 0.80568 0.79179 1.19476 1.19950 1.18374 1.19646 0.98175 0.91296 1.39650 0.90308 1.17670 0.90883 0.92050 0.88026 1.20967 1.04028 0.92861 1.07106 1.20413 0.94960 0.96488 0.97013 1.18989 1.02501 0.92633 1.10538 1.19947 0.96047 0.93280 0.84323 1.46335 1.38008 1.24654 1.27388 1.17285 0.82256 0.80614 0.82591 1.90681 1.30064 1.59184 1.63329 1.20354 1.05236 1.00759 1.02748 1.23229 0.96708 0.96700 0.88147 1.46179 1.29877 1.19026 1.21653 0.71147 1.77197 1.04617 1.07083 1.21021 1.22211 0.95601 0.94338 0.91692 1.21400 0.89014 0.92632 0.88063 0.86397 1.22914 1.01746 0.92993 1.00285 1.23126 0.98087 0.98334 0.99506 1.23590 0.96292 0.82096 1.01081 1.88981 1.69957 1.28206 1.41378 1.20571 0.98014 0.92589 0.98806 1.21312 0.99469 0.96793 1.01361 0.90665 0.88939 0.89361 0.92289 0.92197 0.76953 0.79360 0.89714 0.90553 0.90089 0.90489 0.91857 0.89006 0.89343 0.86448 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.46 10.97 55.55 0.61 -18.86 16 2 C 0.08 1.81 5.14 -17.34 -0.09 1.72 16 3 Si 0.91 17.74 29.60 -169.99 -5.03 12.71 16 4 H -0.27 -5.22 7.11 56.52 0.40 -4.82 16 5 H -0.27 -5.26 7.11 56.52 0.40 -4.86 16 6 H -0.26 -5.03 7.11 56.52 0.40 -4.63 16 7 C -0.46 -11.52 9.05 -37.74 -0.34 -11.87 16 8 H 0.08 1.90 7.91 -52.49 -0.41 1.48 16 9 C 0.12 2.92 5.57 -106.83 -0.60 2.32 16 10 C -0.23 -5.26 9.80 -38.87 -0.38 -5.64 16 11 C -0.07 -1.44 9.67 -39.66 -0.38 -1.82 16 12 C -0.24 -4.86 5.27 -104.33 -0.55 -5.41 16 13 C 0.19 3.23 5.79 -5.19 -0.03 3.20 16 14 N -0.71 -10.73 5.54 -62.56 -0.35 -11.08 16 15 C 0.59 9.21 7.81 -12.52 -0.10 9.11 16 16 O -0.55 -10.19 14.67 5.27 0.08 -10.11 16 17 C -0.28 -3.72 6.13 -105.07 -0.64 -4.36 16 18 C 0.10 1.02 11.52 -16.56 -0.19 0.83 16 19 N -0.46 -4.33 7.29 30.85 0.22 -4.10 16 20 H 0.44 2.44 8.96 -182.73 -1.64 0.80 16 21 N -0.28 -3.62 12.63 33.90 0.43 -3.19 16 22 C 0.13 1.83 5.94 -82.02 -0.49 1.34 16 23 C 0.15 2.00 3.70 -27.31 -0.10 1.90 16 24 H 0.12 1.78 5.92 -51.93 -0.31 1.47 16 25 C -0.14 -1.50 6.63 -25.20 -0.17 -1.67 16 26 C -0.15 -1.30 7.16 -24.72 -0.18 -1.48 16 27 C 0.05 0.44 7.72 38.21 0.29 0.73 16 28 O -0.37 -5.03 11.19 -35.23 -0.39 -5.42 16 29 C -0.08 -1.74 9.67 -39.66 -0.38 -2.13 16 30 C -0.17 -4.13 8.70 -38.87 -0.34 -4.47 16 31 H 0.28 6.35 8.30 -40.82 -0.34 6.01 16 32 H 0.09 2.01 8.06 -52.49 -0.42 1.58 16 33 H 0.09 1.62 8.06 -52.49 -0.42 1.19 16 34 H 0.06 1.03 8.08 -51.93 -0.42 0.61 16 35 H 0.06 1.08 8.08 -51.93 -0.42 0.66 16 36 H 0.40 5.18 7.39 -40.82 -0.30 4.88 16 37 H 0.19 1.17 7.46 -52.49 -0.39 0.78 16 38 H 0.08 0.84 8.14 -51.93 -0.42 0.41 16 39 H 0.08 0.84 7.69 -51.93 -0.40 0.44 16 40 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 42 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 43 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 44 H 0.09 1.76 8.06 -52.49 -0.42 1.34 16 45 H 0.12 2.98 6.17 -52.49 -0.32 2.65 16 LS Contribution 379.30 15.07 5.72 5.72 Total: -1.00 -30.79 379.30 -10.51 -41.30 By element: Atomic # 1 Polarization: 17.87 SS G_CDS: -7.13 Total: 10.74 kcal Atomic # 6 Polarization: -13.04 SS G_CDS: -4.66 Total: -17.70 kcal Atomic # 7 Polarization: -38.15 SS G_CDS: 0.92 Total: -37.23 kcal Atomic # 8 Polarization: -15.21 SS G_CDS: -0.32 Total: -15.53 kcal Atomic # 14 Polarization: 17.74 SS G_CDS: -5.03 Total: 12.71 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -30.79 -10.51 -41.30 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000869062463.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.008 kcal (2) G-P(sol) polarization free energy of solvation -30.789 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.218 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.300 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.708 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds