Wall clock time and date at job start Sat Apr 11 2020 06:18:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30826 * 1 3 3 Si 1.86803 * 119.99557 * 2 1 4 4 H 1.48497 * 109.46950 * 274.66129 * 3 2 1 5 5 H 1.48494 * 109.47176 * 34.66389 * 3 2 1 6 6 H 1.48499 * 109.47141 * 154.66438 * 3 2 1 7 7 C 1.39948 * 120.00311 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99783 * 162.23425 * 7 2 1 9 9 C 1.41388 * 119.99746 * 342.23409 * 7 2 1 10 10 C 1.40719 * 120.24247 * 155.29087 * 9 7 2 11 11 C 1.37616 * 119.74696 * 180.02562 * 10 9 7 12 12 C 1.38634 * 120.24626 * 0.02562 * 11 10 9 13 13 C 1.50708 * 119.74647 * 179.97438 * 12 11 10 14 14 N 1.46493 * 109.47323 * 90.00046 * 13 12 11 15 15 C 1.34776 * 120.00096 * 180.02562 * 14 13 12 16 16 O 1.21608 * 119.99945 * 359.97438 * 15 14 13 17 17 C 1.47432 * 120.00008 * 179.97438 * 15 14 13 18 18 C 1.38038 * 126.41541 * 0.04384 * 17 15 14 19 19 N 1.34261 * 107.41743 * 179.97438 * 18 17 15 20 20 H 0.96994 * 125.75546 * 180.02562 * 19 18 17 21 21 N 1.39933 * 108.49137 * 359.97438 * 19 18 17 22 22 C 1.30446 * 108.89832 * 0.02562 * 21 19 18 23 23 C 1.50704 * 125.99210 * 179.97438 * 22 21 19 24 24 H 1.08997 * 109.87478 * 164.32528 * 23 22 21 25 25 C 1.54100 * 109.87398 * 285.33001 * 23 22 21 26 26 C 1.54813 * 104.18811 * 121.45448 * 25 23 22 27 27 C 1.55001 * 102.09193 * 20.87677 * 26 25 23 28 28 O 1.43743 * 109.87736 * 43.31199 * 23 22 21 29 29 C 1.38629 * 120.50360 * 0.25015 * 12 11 10 30 30 C 1.37617 * 120.24787 * 359.45215 * 29 12 11 31 31 H 0.96992 * 119.99968 * 359.97438 * 1 2 3 32 32 H 1.07998 * 120.12747 * 0.03795 * 10 9 7 33 33 H 1.07999 * 119.87920 * 179.97438 * 11 10 9 34 34 H 1.08995 * 109.46765 * 329.99295 * 13 12 11 35 35 H 1.09005 * 109.46321 * 209.99991 * 13 12 11 36 36 H 0.96998 * 120.00213 * 359.97438 * 14 13 12 37 37 H 1.07998 * 126.29291 * 359.97438 * 18 17 15 38 38 H 1.09007 * 110.48600 * 240.12194 * 25 23 22 39 39 H 1.08995 * 110.49388 * 2.64520 * 25 23 22 40 40 H 1.09002 * 110.90853 * 139.07433 * 26 25 23 41 41 H 1.09000 * 110.90903 * 262.68401 * 26 25 23 42 42 H 1.09004 * 110.61840 * 81.47662 * 27 26 25 43 43 H 1.08999 * 110.61722 * 204.47561 * 27 26 25 44 44 H 1.07999 * 119.87905 * 179.70116 * 29 12 11 45 45 H 1.08000 * 120.13021 * 180.26491 * 30 29 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 2.3911 2.1034 -1.3954 5 1 1.4923 2.6222 0.7963 6 1 3.5855 1.4139 0.5991 7 6 2.0081 -1.2119 0.0005 8 1 3.0494 -1.2343 -0.2848 9 6 1.3517 -2.4070 0.3747 10 6 1.8220 -3.6493 -0.0899 11 6 1.1751 -4.8061 0.2803 12 6 0.0637 -4.7507 1.1071 13 6 -0.6366 -6.0246 1.5049 14 7 -0.0448 -6.5415 2.7413 15 6 -0.5141 -7.6804 3.2883 16 8 -1.4292 -8.2786 2.7557 17 6 0.0818 -8.2010 4.5322 18 6 1.1184 -7.6324 5.2447 19 7 1.3537 -8.4179 6.3078 20 1 2.0290 -8.2650 6.9871 21 7 0.4595 -9.4936 6.2714 22 6 -0.3019 -9.3747 5.2189 23 6 -1.3983 -10.3231 4.8073 24 1 -2.0407 -9.8476 4.0661 25 6 -0.7854 -11.6098 4.2212 26 6 -1.3377 -12.7389 5.1249 27 6 -2.5882 -12.0711 5.7514 28 8 -2.1747 -10.7010 5.9565 29 6 -0.4119 -3.5321 1.5661 30 6 0.2229 -2.3631 1.2138 31 1 -0.4850 0.8400 0.0004 32 1 2.6875 -3.6947 -0.7342 33 1 1.5339 -5.7606 -0.0754 34 1 -0.5246 -6.7636 0.7117 35 1 -1.6955 -5.8219 1.6659 36 1 0.6854 -6.0646 3.1659 37 1 1.6437 -6.7229 4.9932 38 1 -1.1110 -11.7524 3.1907 39 1 0.3026 -11.5730 4.2750 40 1 -1.6177 -13.6098 4.5321 41 1 -0.6149 -13.0099 5.8944 42 1 -3.4327 -12.1161 5.0636 43 1 -2.8400 -12.5427 6.7013 44 1 -1.2814 -3.5004 2.2059 45 1 -0.1466 -1.4151 1.5759 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000869062463.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:56 Heat of formation + Delta-G solvation = -19.161016 kcal Electronic energy + Delta-G solvation = -28126.882962 eV Core-core repulsion = 24109.139733 eV Total energy + Delta-G solvation = -4017.743228 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.54753 -40.28072 -40.10468 -39.28394 -36.27350 -35.05657 -33.62533 -32.87012 -32.43817 -31.26206 -31.02763 -29.64628 -28.41153 -25.59391 -24.56333 -23.78879 -22.86303 -22.57782 -21.84652 -21.24302 -20.78906 -19.50683 -19.21327 -17.55824 -17.28327 -17.18023 -17.01082 -16.64600 -16.37195 -16.07532 -15.80412 -15.66013 -15.43323 -15.01143 -14.85072 -14.54875 -14.39086 -14.20612 -13.83917 -13.79558 -13.51095 -13.28121 -12.91681 -12.71771 -12.70051 -12.67343 -12.36976 -12.21044 -12.14788 -12.02095 -11.68827 -11.46540 -11.27293 -11.10307 -10.98162 -10.78214 -10.47297 -10.12769 -9.73021 -9.36370 -9.25217 -8.65281 -6.34674 0.51782 0.87239 0.95961 1.16777 1.39774 1.47194 1.54578 1.74847 2.20607 2.38970 2.44055 2.80921 2.98500 3.34205 3.60910 3.74264 3.77648 3.98841 4.00468 4.13135 4.21543 4.34952 4.36738 4.39702 4.42559 4.56776 4.64196 4.71384 4.80439 4.87075 4.90950 4.92417 5.03670 5.08028 5.16466 5.16978 5.22711 5.38632 5.45874 5.56366 5.71490 5.87774 5.94619 6.11233 6.22546 6.24048 6.38947 6.45862 6.70665 6.75334 6.94154 7.03460 7.35670 8.31274 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.025527 B = 0.001966 C = 0.001914 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1096.628651 B =14238.498966 C =14624.280592 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.822 5.822 2 C 0.035 3.965 3 Si 0.980 3.020 4 H -0.265 1.265 5 H -0.267 1.267 6 H -0.257 1.257 7 C -0.496 4.496 8 H 0.077 0.923 9 C 0.086 3.914 10 C -0.242 4.242 11 C -0.067 4.067 12 C -0.223 4.223 13 C 0.195 3.805 14 N -0.706 5.706 15 C 0.588 3.412 16 O -0.586 6.586 17 C -0.311 4.311 18 C 0.136 3.864 19 N -0.444 5.444 20 H 0.462 0.538 21 N -0.299 5.299 22 C 0.116 3.884 23 C 0.144 3.856 24 H 0.094 0.906 25 C -0.138 4.138 26 C -0.143 4.143 27 C 0.037 3.963 28 O -0.393 6.393 29 C -0.082 4.082 30 C -0.192 4.192 31 H 0.288 0.712 32 H 0.098 0.902 33 H 0.117 0.883 34 H 0.062 0.938 35 H 0.054 0.946 36 H 0.408 0.592 37 H 0.230 0.770 38 H 0.088 0.912 39 H 0.071 0.929 40 H 0.106 0.894 41 H 0.078 0.922 42 H 0.072 0.928 43 H 0.109 0.891 44 H 0.103 0.897 45 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.313 -16.968 11.612 20.691 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.447 5.447 2 C -0.180 4.180 3 Si 0.801 3.199 4 H -0.189 1.189 5 H -0.192 1.192 6 H -0.181 1.181 7 C -0.525 4.525 8 H 0.095 0.905 9 C 0.083 3.917 10 C -0.262 4.262 11 C -0.085 4.085 12 C -0.225 4.225 13 C 0.073 3.927 14 N -0.357 5.357 15 C 0.377 3.623 16 O -0.468 6.468 17 C -0.326 4.326 18 C -0.018 4.018 19 N -0.150 5.150 20 H 0.311 0.689 21 N -0.122 5.122 22 C -0.052 4.052 23 C 0.084 3.916 24 H 0.111 0.889 25 C -0.177 4.177 26 C -0.181 4.181 27 C -0.038 4.038 28 O -0.313 6.313 29 C -0.101 4.101 30 C -0.211 4.211 31 H 0.099 0.901 32 H 0.116 0.884 33 H 0.135 0.865 34 H 0.080 0.920 35 H 0.072 0.928 36 H 0.244 0.756 37 H 0.246 0.754 38 H 0.107 0.893 39 H 0.089 0.911 40 H 0.124 0.876 41 H 0.096 0.904 42 H 0.090 0.910 43 H 0.127 0.873 44 H 0.121 0.879 45 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 1.676 -17.803 12.431 21.778 hybrid contribution 0.685 1.849 -0.606 2.063 sum 2.361 -15.953 11.825 19.998 Atomic orbital electron populations 1.69874 1.09023 1.30636 1.35215 1.26763 0.95449 1.04567 0.91243 0.85225 0.79301 0.76112 0.79301 1.18938 1.19194 1.18066 1.19883 0.98421 0.92524 1.41684 0.90478 1.17998 0.91686 0.93106 0.88866 1.21154 1.04578 0.93017 1.07402 1.20683 0.94553 0.96943 0.96331 1.19178 1.01553 0.93011 1.08765 1.19717 0.95513 0.92035 0.85477 1.46034 1.38273 1.24701 1.26666 1.17527 0.81672 0.80127 0.82979 1.90668 1.31595 1.60107 1.64421 1.20241 1.07543 1.01857 1.02972 1.23727 0.94731 0.96754 0.86605 1.46211 1.29228 1.17806 1.21800 0.68902 1.77134 1.05462 1.08666 1.20922 1.22352 0.95972 0.94758 0.92111 1.21315 0.88876 0.93696 0.87689 0.88874 1.22892 1.01281 0.92660 1.00820 1.23111 0.97402 0.98261 0.99281 1.23861 0.96986 0.80563 1.02440 1.88941 1.70263 1.30461 1.41612 1.20751 0.98162 0.92407 0.98746 1.21253 1.00314 0.97033 1.02521 0.90093 0.88396 0.86507 0.91980 0.92768 0.75577 0.75378 0.89342 0.91050 0.87572 0.90376 0.91021 0.87294 0.87877 0.88313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -41.74 10.97 21.83 0.24 -41.50 16 2 C 0.04 1.71 5.14 85.26 0.44 2.15 16 3 Si 0.98 36.67 29.60 68.60 2.03 38.70 16 4 H -0.26 -9.60 7.11 99.48 0.71 -8.89 16 5 H -0.27 -9.58 7.11 99.48 0.71 -8.88 16 6 H -0.26 -9.37 7.11 99.48 0.71 -8.67 16 7 C -0.50 -25.55 9.05 23.46 0.21 -25.34 16 8 H 0.08 3.82 7.91 -2.91 -0.02 3.80 16 9 C 0.09 4.38 5.57 -21.29 -0.12 4.26 16 10 C -0.24 -11.00 9.80 22.73 0.22 -10.78 16 11 C -0.07 -2.61 9.67 22.22 0.21 -2.40 16 12 C -0.22 -8.51 5.27 -19.67 -0.10 -8.61 16 13 C 0.20 6.44 5.79 85.64 0.50 6.94 16 14 N -0.71 -19.80 5.54 -470.10 -2.60 -22.41 16 15 C 0.59 17.88 7.81 86.67 0.68 18.56 16 16 O -0.59 -21.64 14.67 -4.06 -0.06 -21.70 16 17 C -0.31 -7.95 6.13 -20.15 -0.12 -8.08 16 18 C 0.14 2.24 11.52 84.27 0.97 3.21 16 19 N -0.44 -7.10 7.29 -56.32 -0.41 -7.51 16 20 H 0.46 3.58 8.96 -213.43 -1.91 1.67 16 21 N -0.30 -7.42 12.63 -46.67 -0.59 -8.01 16 22 C 0.12 3.20 5.94 43.52 0.26 3.46 16 23 C 0.14 3.91 3.70 30.22 0.11 4.02 16 24 H 0.09 2.94 5.92 -2.39 -0.01 2.93 16 25 C -0.14 -2.88 6.63 31.59 0.21 -2.67 16 26 C -0.14 -2.23 7.16 31.90 0.23 -2.00 16 27 C 0.04 0.67 7.72 72.67 0.56 1.23 16 28 O -0.39 -10.81 11.19 -148.98 -1.67 -12.47 16 29 C -0.08 -3.49 9.67 22.22 0.21 -3.27 16 30 C -0.19 -9.50 8.70 22.73 0.20 -9.30 16 31 H 0.29 13.25 8.30 -92.71 -0.77 12.48 16 32 H 0.10 4.23 8.06 -2.91 -0.02 4.21 16 33 H 0.12 3.92 8.06 -2.91 -0.02 3.90 16 34 H 0.06 2.05 8.08 -2.39 -0.02 2.03 16 35 H 0.05 1.88 8.08 -2.38 -0.02 1.86 16 36 H 0.41 9.50 7.39 -92.71 -0.68 8.81 16 37 H 0.23 1.77 7.46 -2.91 -0.02 1.74 16 38 H 0.09 1.72 8.14 -2.38 -0.02 1.70 16 39 H 0.07 1.54 7.69 -2.39 -0.02 1.52 16 40 H 0.11 1.11 8.14 -2.39 -0.02 1.09 16 41 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 42 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 43 H 0.11 1.53 8.14 -2.39 -0.02 1.51 16 44 H 0.10 4.02 8.06 -2.91 -0.02 4.00 16 45 H 0.10 5.20 6.17 -2.91 -0.02 5.18 16 Total: -1.00 -69.26 379.30 0.06 -69.20 By element: Atomic # 1 Polarization: 35.85 SS G_CDS: -1.55 Total: 34.30 kcal Atomic # 6 Polarization: -33.27 SS G_CDS: 4.67 Total: -28.60 kcal Atomic # 7 Polarization: -76.06 SS G_CDS: -3.36 Total: -79.42 kcal Atomic # 8 Polarization: -32.45 SS G_CDS: -1.73 Total: -34.17 kcal Atomic # 14 Polarization: 36.67 SS G_CDS: 2.03 Total: 38.70 kcal Total: -69.26 0.06 -69.20 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000869062463.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.037 kcal (2) G-P(sol) polarization free energy of solvation -69.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.222 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.198 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds