Wall clock time and date at job start Sat Apr 11 2020 06:19:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31561 * 1 3 3 Si 1.86798 * 119.99437 * 2 1 4 4 H 1.48500 * 109.47003 * 239.99407 * 3 2 1 5 5 H 1.48490 * 109.47859 * 359.97438 * 3 2 1 6 6 H 1.48508 * 109.46827 * 120.00266 * 3 2 1 7 7 C 1.38643 * 119.99859 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99874 * 180.02562 * 7 2 1 9 9 O 1.34831 * 120.00736 * 0.02562 * 7 2 1 10 10 C 1.35745 * 117.00312 * 185.05395 * 9 7 2 11 11 C 1.38877 * 120.07197 * 354.46843 * 10 9 7 12 12 C 1.38096 * 119.93329 * 180.02562 * 11 10 9 13 13 C 1.38304 * 120.06594 * 0.02562 * 12 11 10 14 14 C 1.50701 * 119.92625 * 179.97438 * 13 12 11 15 15 C 1.50699 * 109.47059 * 90.00766 * 14 13 12 16 16 O 1.21302 * 120.00258 * 359.97438 * 15 14 13 17 17 N 1.34780 * 119.99922 * 180.27713 * 15 14 13 18 18 C 1.40763 * 120.00062 * 179.72344 * 17 15 14 19 19 C 1.40467 * 126.15030 * 0.02562 * 18 17 15 20 20 N 1.31032 * 108.39277 * 179.97438 * 19 18 17 21 21 N 1.39609 * 108.28212 * 359.96498 * 20 19 18 22 22 C 1.35125 * 126.15187 * 179.71469 * 18 17 15 23 23 C 1.50840 * 127.97446 * 0.79120 * 22 18 17 24 24 C 1.53451 * 108.19233 * 163.77481 * 23 22 18 25 25 C 1.53139 * 109.23505 * 48.41826 * 24 23 22 26 26 C 1.46582 * 127.70652 * 180.11984 * 21 20 19 27 27 C 1.38298 * 120.14326 * 0.25695 * 13 12 11 28 28 C 1.38105 * 120.06444 * 359.45110 * 27 13 12 29 29 H 0.97000 * 120.00281 * 0.02562 * 1 2 3 30 30 H 1.08004 * 120.03543 * 359.97438 * 11 10 9 31 31 H 1.08004 * 119.96668 * 180.02562 * 12 11 10 32 32 H 1.09000 * 109.47468 * 330.00338 * 14 13 12 33 33 H 1.09001 * 109.47115 * 210.00399 * 14 13 12 34 34 H 0.96998 * 120.00268 * 359.71387 * 17 15 14 35 35 H 1.08005 * 125.80448 * 0.02562 * 19 18 17 36 36 H 1.08998 * 109.88506 * 43.98701 * 23 22 18 37 37 H 1.08998 * 109.51709 * 283.34517 * 23 22 18 38 38 H 1.09006 * 109.50985 * 288.49176 * 24 23 22 39 39 H 1.09000 * 109.55390 * 168.36621 * 24 23 22 40 40 H 1.08992 * 109.45008 * 170.26618 * 25 24 23 41 41 H 1.08994 * 109.44510 * 50.35202 * 25 24 23 42 42 H 1.09001 * 109.59090 * 282.47912 * 26 21 20 43 43 H 1.09000 * 109.58574 * 42.76548 * 26 21 20 44 44 H 1.07994 * 119.96878 * 179.70329 * 27 13 12 45 45 H 1.07993 * 120.03458 * 180.27464 * 28 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2494 1.6178 0.0000 4 1 3.1033 1.6965 -1.2124 5 1 1.2845 2.7465 -0.0006 6 1 3.1033 1.6965 1.2126 7 6 2.0088 -1.2007 0.0005 8 1 3.0889 -1.2007 0.0010 9 8 1.3348 -2.3684 0.0005 10 6 2.0700 -3.5045 0.1076 11 6 3.4572 -3.4394 0.0952 12 6 4.2024 -4.5969 0.2038 13 6 3.5686 -5.8203 0.3243 14 6 4.3849 -7.0816 0.4420 15 6 4.6631 -7.3661 1.8955 16 8 4.2405 -6.6179 2.7517 17 7 5.3866 -8.4485 2.2439 18 6 5.6514 -8.7110 3.6012 19 6 5.2269 -7.9362 4.6932 20 7 5.6657 -8.4967 5.7933 21 7 6.3814 -9.6437 5.4451 22 6 6.3546 -9.7570 4.0884 23 6 7.0266 -10.8643 3.3153 24 6 8.0192 -11.5676 4.2507 25 6 7.3227 -11.8883 5.5763 26 6 7.0515 -10.5892 6.3426 27 6 2.1873 -5.8891 0.3311 28 6 1.4366 -4.7345 0.2289 29 1 -0.4850 0.8400 -0.0004 30 1 3.9528 -2.4845 -0.0001 31 1 5.2812 -4.5469 0.1946 32 1 5.3276 -6.9554 -0.0904 33 1 3.8313 -7.9144 0.0083 34 1 5.7248 -9.0467 1.5593 35 1 4.6382 -7.0325 4.6359 36 1 7.5585 -10.4490 2.4594 37 1 6.2760 -11.5766 2.9726 38 1 8.8710 -10.9132 4.4360 39 1 8.3642 -12.4921 3.7879 40 1 7.9628 -12.5361 6.1752 41 1 6.3788 -12.3956 5.3768 42 1 7.9947 -10.1629 6.6845 43 1 6.4113 -10.7952 7.2004 44 1 1.6953 -6.8463 0.4205 45 1 0.3580 -4.7884 0.2388 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000870694614.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:02 Heat of formation + Delta-G solvation = 35.889383 kcal Electronic energy + Delta-G solvation = -28042.841812 eV Core-core repulsion = 24027.485748 eV Total energy + Delta-G solvation = -4015.356064 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.77414 -39.71124 -38.73509 -36.87097 -36.42599 -34.82270 -32.50475 -32.16479 -31.22850 -30.48538 -30.09314 -28.00462 -26.33727 -25.04527 -24.59319 -22.66682 -22.15096 -21.91022 -20.60355 -19.96141 -19.35445 -17.92541 -17.40794 -16.92965 -16.76809 -16.08229 -15.55190 -15.30295 -14.78602 -14.70624 -14.53934 -14.52046 -14.32574 -14.11035 -13.98331 -13.78152 -13.51445 -13.31564 -12.80913 -12.65387 -12.56560 -12.30366 -11.86149 -11.69592 -11.60899 -11.49515 -11.48814 -11.20606 -10.80463 -10.78382 -10.71495 -10.70257 -10.59004 -10.39142 -9.66107 -9.30852 -9.27220 -8.76542 -8.09110 -7.76117 -7.11190 -6.39223 -3.97801 1.59984 2.16848 2.31163 2.34954 2.45814 3.13018 3.16182 3.17720 3.21183 3.24933 3.99150 4.01999 4.11787 4.18751 4.29789 4.57254 4.75107 4.77167 4.85177 4.96868 5.10538 5.13202 5.15769 5.19428 5.27440 5.28474 5.33545 5.35284 5.37507 5.58026 5.60207 5.67949 5.70412 5.78422 5.90411 6.13304 6.27624 6.47704 6.75920 6.77841 6.86380 6.97268 7.10966 7.29328 7.39537 7.42447 7.50932 7.65547 7.89769 8.05980 8.29909 9.06391 9.77078 10.78812 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.023582 B = 0.001929 C = 0.001869 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1187.050212 B =14508.337471 C =14979.843876 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.864 5.864 2 C 0.039 3.961 3 Si 0.941 3.059 4 H -0.270 1.270 5 H -0.278 1.278 6 H -0.270 1.270 7 C -0.391 4.391 8 H 0.091 0.909 9 O -0.178 6.178 10 C 0.157 3.843 11 C -0.233 4.233 12 C -0.055 4.055 13 C -0.172 4.172 14 C -0.075 4.075 15 C 0.510 3.490 16 O -0.507 6.507 17 N -0.652 5.652 18 C 0.015 3.985 19 C 0.052 3.948 20 N -0.285 5.285 21 N -0.372 5.372 22 C 0.036 3.964 23 C -0.053 4.053 24 C -0.124 4.124 25 C -0.136 4.136 26 C 0.139 3.861 27 C -0.058 4.058 28 C -0.192 4.192 29 H 0.270 0.730 30 H 0.126 0.874 31 H 0.104 0.896 32 H 0.094 0.906 33 H 0.094 0.906 34 H 0.406 0.594 35 H 0.208 0.792 36 H 0.087 0.913 37 H 0.085 0.915 38 H 0.070 0.930 39 H 0.079 0.921 40 H 0.091 0.909 41 H 0.075 0.925 42 H 0.081 0.919 43 H 0.091 0.909 44 H 0.108 0.892 45 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.235 -26.125 5.341 31.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.498 5.498 2 C -0.166 4.166 3 Si 0.765 3.235 4 H -0.195 1.195 5 H -0.203 1.203 6 H -0.195 1.195 7 C -0.467 4.467 8 H 0.109 0.891 9 O -0.081 6.081 10 C 0.103 3.897 11 C -0.252 4.252 12 C -0.074 4.074 13 C -0.173 4.173 14 C -0.115 4.115 15 C 0.297 3.703 16 O -0.380 6.380 17 N -0.299 5.299 18 C -0.090 4.090 19 C -0.135 4.135 20 N -0.106 5.106 21 N -0.159 5.159 22 C -0.092 4.092 23 C -0.092 4.092 24 C -0.162 4.162 25 C -0.174 4.174 26 C 0.018 3.982 27 C -0.077 4.077 28 C -0.211 4.211 29 H 0.080 0.920 30 H 0.144 0.856 31 H 0.122 0.878 32 H 0.112 0.888 33 H 0.113 0.887 34 H 0.240 0.760 35 H 0.224 0.776 36 H 0.105 0.895 37 H 0.104 0.896 38 H 0.089 0.911 39 H 0.098 0.902 40 H 0.109 0.891 41 H 0.094 0.906 42 H 0.099 0.901 43 H 0.109 0.891 44 H 0.126 0.874 45 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 16.557 -25.308 7.282 31.107 hybrid contribution 0.673 0.499 -1.088 1.373 sum 17.230 -24.809 6.194 30.834 Atomic orbital electron populations 1.70033 1.05933 1.27702 1.46182 1.25281 0.95844 0.98808 0.96619 0.85788 0.78692 0.79823 0.79166 1.19544 1.20316 1.19493 1.21276 0.91770 0.80857 1.52790 0.89133 1.83974 1.34368 1.11460 1.78337 1.19387 0.90301 0.88027 0.91943 1.21100 0.93801 0.98770 1.11524 1.20507 0.98041 0.91759 0.97050 1.18587 0.93167 0.92644 1.12905 1.20370 1.01408 0.98323 0.91391 1.21192 0.77131 0.79442 0.92496 1.90630 1.49291 1.46444 1.51589 1.43025 1.54535 1.27928 1.04392 1.17285 1.07755 0.98282 0.85654 1.24654 1.00350 1.01158 0.87330 1.77344 1.12708 0.97109 1.23425 1.48360 1.42995 1.20689 1.03836 1.20305 1.04404 0.99087 0.85431 1.20345 0.97748 0.93982 0.97134 1.21634 0.98143 1.01261 0.95113 1.21942 1.02329 0.96015 0.97137 1.21710 0.97216 0.87113 0.92151 1.20399 0.92742 0.96718 0.97810 1.20155 0.99493 0.90284 1.11158 0.92026 0.85612 0.87805 0.88772 0.88736 0.75991 0.77620 0.89451 0.89646 0.91118 0.90234 0.89101 0.90579 0.90109 0.89101 0.87356 0.86561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.85 13.67 55.48 0.76 -25.09 16 2 C 0.04 1.09 5.49 -17.52 -0.10 0.99 16 3 Si 0.94 21.03 29.55 -169.99 -5.02 16.01 16 4 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 5 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 6 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 7 C -0.39 -11.20 9.49 30.88 0.29 -10.91 16 8 H 0.09 2.40 5.20 -52.48 -0.27 2.13 16 9 O -0.18 -5.23 9.76 0.06 0.00 -5.23 16 10 C 0.16 3.94 6.65 -39.11 -0.26 3.68 16 11 C -0.23 -5.24 9.17 -39.40 -0.36 -5.61 16 12 C -0.06 -1.04 9.69 -39.61 -0.38 -1.43 16 13 C -0.17 -2.95 4.38 -104.58 -0.46 -3.40 16 14 C -0.07 -0.89 5.83 -29.04 -0.17 -1.06 16 15 C 0.51 6.97 7.79 -10.98 -0.09 6.88 16 16 O -0.51 -9.27 13.20 5.54 0.07 -9.19 16 17 N -0.65 -6.89 5.47 -10.12 -0.06 -6.94 16 18 C 0.01 0.18 6.87 -84.02 -0.58 -0.40 16 19 C 0.05 0.79 10.85 -17.05 -0.18 0.61 16 20 N -0.28 -4.17 12.61 30.78 0.39 -3.78 16 21 N -0.37 -4.12 4.06 -56.66 -0.23 -4.35 16 22 C 0.04 0.36 6.62 -81.70 -0.54 -0.18 16 23 C -0.05 -0.29 6.11 -27.58 -0.17 -0.46 16 24 C -0.12 -0.49 5.97 -26.43 -0.16 -0.64 16 25 C -0.14 -0.54 5.92 -26.53 -0.16 -0.70 16 26 C 0.14 0.94 7.28 -3.87 -0.03 0.91 16 27 C -0.06 -1.07 9.69 -39.61 -0.38 -1.46 16 28 C -0.19 -4.21 9.99 -39.39 -0.39 -4.61 16 29 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 30 H 0.13 2.83 5.64 -52.48 -0.30 2.54 16 31 H 0.10 1.68 8.06 -52.48 -0.42 1.25 16 32 H 0.09 0.88 8.08 -51.93 -0.42 0.46 16 33 H 0.09 0.87 8.08 -51.93 -0.42 0.45 16 34 H 0.41 2.65 8.63 -40.82 -0.35 2.30 16 35 H 0.21 3.47 5.93 -52.48 -0.31 3.16 16 36 H 0.09 0.37 8.14 -51.93 -0.42 -0.06 16 37 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 38 H 0.07 0.31 8.12 -51.93 -0.42 -0.11 16 39 H 0.08 0.18 8.14 -51.93 -0.42 -0.25 16 40 H 0.09 0.17 8.14 -51.93 -0.42 -0.25 16 41 H 0.08 0.33 8.11 -51.93 -0.42 -0.09 16 42 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 43 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 44 H 0.11 1.67 8.06 -52.49 -0.42 1.24 16 45 H 0.12 2.47 8.06 -52.49 -0.42 2.04 16 LS Contribution 376.58 15.07 5.67 5.67 Total: -1.00 -36.81 376.58 -8.38 -45.20 By element: Atomic # 1 Polarization: 11.34 SS G_CDS: -5.86 Total: 5.49 kcal Atomic # 6 Polarization: -13.67 SS G_CDS: -4.11 Total: -17.79 kcal Atomic # 7 Polarization: -41.02 SS G_CDS: 0.86 Total: -40.16 kcal Atomic # 8 Polarization: -14.50 SS G_CDS: 0.07 Total: -14.42 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.01 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -36.81 -8.38 -45.20 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000870694614.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.085 kcal (2) G-P(sol) polarization free energy of solvation -36.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.382 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.196 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds