Wall clock time and date at job start Sat Apr 11 2020 06:19:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31561 * 1 3 3 Si 1.86798 * 119.99437 * 2 1 4 4 H 1.48500 * 109.47003 * 239.99407 * 3 2 1 5 5 H 1.48490 * 109.47859 * 359.97438 * 3 2 1 6 6 H 1.48508 * 109.46827 * 120.00266 * 3 2 1 7 7 C 1.38643 * 119.99859 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99874 * 180.02562 * 7 2 1 9 9 O 1.34831 * 120.00736 * 0.02562 * 7 2 1 10 10 C 1.35745 * 117.00312 * 185.05395 * 9 7 2 11 11 C 1.38877 * 120.07197 * 354.46843 * 10 9 7 12 12 C 1.38096 * 119.93329 * 180.02562 * 11 10 9 13 13 C 1.38304 * 120.06594 * 0.02562 * 12 11 10 14 14 C 1.50701 * 119.92625 * 179.97438 * 13 12 11 15 15 C 1.50699 * 109.47059 * 90.00766 * 14 13 12 16 16 O 1.21302 * 120.00258 * 359.97438 * 15 14 13 17 17 N 1.34780 * 119.99922 * 180.27713 * 15 14 13 18 18 C 1.40763 * 120.00062 * 179.72344 * 17 15 14 19 19 C 1.40467 * 126.15030 * 0.02562 * 18 17 15 20 20 N 1.31032 * 108.39277 * 179.97438 * 19 18 17 21 21 N 1.39609 * 108.28212 * 359.96498 * 20 19 18 22 22 C 1.35125 * 126.15187 * 179.71469 * 18 17 15 23 23 C 1.50840 * 127.97446 * 0.79120 * 22 18 17 24 24 C 1.53451 * 108.19233 * 163.77481 * 23 22 18 25 25 C 1.53139 * 109.23505 * 48.41826 * 24 23 22 26 26 C 1.46582 * 127.70652 * 180.11984 * 21 20 19 27 27 C 1.38298 * 120.14326 * 0.25695 * 13 12 11 28 28 C 1.38105 * 120.06444 * 359.45110 * 27 13 12 29 29 H 0.97000 * 120.00281 * 0.02562 * 1 2 3 30 30 H 1.08004 * 120.03543 * 359.97438 * 11 10 9 31 31 H 1.08004 * 119.96668 * 180.02562 * 12 11 10 32 32 H 1.09000 * 109.47468 * 330.00338 * 14 13 12 33 33 H 1.09001 * 109.47115 * 210.00399 * 14 13 12 34 34 H 0.96998 * 120.00268 * 359.71387 * 17 15 14 35 35 H 1.08005 * 125.80448 * 0.02562 * 19 18 17 36 36 H 1.08998 * 109.88506 * 43.98701 * 23 22 18 37 37 H 1.08998 * 109.51709 * 283.34517 * 23 22 18 38 38 H 1.09006 * 109.50985 * 288.49176 * 24 23 22 39 39 H 1.09000 * 109.55390 * 168.36621 * 24 23 22 40 40 H 1.08992 * 109.45008 * 170.26618 * 25 24 23 41 41 H 1.08994 * 109.44510 * 50.35202 * 25 24 23 42 42 H 1.09001 * 109.59090 * 282.47912 * 26 21 20 43 43 H 1.09000 * 109.58574 * 42.76548 * 26 21 20 44 44 H 1.07994 * 119.96878 * 179.70329 * 27 13 12 45 45 H 1.07993 * 120.03458 * 180.27464 * 28 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2494 1.6178 0.0000 4 1 3.1033 1.6965 -1.2124 5 1 1.2845 2.7465 -0.0006 6 1 3.1033 1.6965 1.2126 7 6 2.0088 -1.2007 0.0005 8 1 3.0889 -1.2007 0.0010 9 8 1.3348 -2.3684 0.0005 10 6 2.0700 -3.5045 0.1076 11 6 3.4572 -3.4394 0.0952 12 6 4.2024 -4.5969 0.2038 13 6 3.5686 -5.8203 0.3243 14 6 4.3849 -7.0816 0.4420 15 6 4.6631 -7.3661 1.8955 16 8 4.2405 -6.6179 2.7517 17 7 5.3866 -8.4485 2.2439 18 6 5.6514 -8.7110 3.6012 19 6 5.2269 -7.9362 4.6932 20 7 5.6657 -8.4967 5.7933 21 7 6.3814 -9.6437 5.4451 22 6 6.3546 -9.7570 4.0884 23 6 7.0266 -10.8643 3.3153 24 6 8.0192 -11.5676 4.2507 25 6 7.3227 -11.8883 5.5763 26 6 7.0515 -10.5892 6.3426 27 6 2.1873 -5.8891 0.3311 28 6 1.4366 -4.7345 0.2289 29 1 -0.4850 0.8400 -0.0004 30 1 3.9528 -2.4845 -0.0001 31 1 5.2812 -4.5469 0.1946 32 1 5.3276 -6.9554 -0.0904 33 1 3.8313 -7.9144 0.0083 34 1 5.7248 -9.0467 1.5593 35 1 4.6382 -7.0325 4.6359 36 1 7.5585 -10.4490 2.4594 37 1 6.2760 -11.5766 2.9726 38 1 8.8710 -10.9132 4.4360 39 1 8.3642 -12.4921 3.7879 40 1 7.9628 -12.5361 6.1752 41 1 6.3788 -12.3956 5.3768 42 1 7.9947 -10.1629 6.6845 43 1 6.4113 -10.7952 7.2004 44 1 1.6953 -6.8463 0.4205 45 1 0.3580 -4.7884 0.2388 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000870694614.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:01 Heat of formation + Delta-G solvation = 10.073495 kcal Electronic energy + Delta-G solvation = -28043.961273 eV Core-core repulsion = 24027.485748 eV Total energy + Delta-G solvation = -4016.475525 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.63416 -41.00094 -40.29218 -38.23046 -37.32775 -35.80102 -34.39030 -33.16640 -32.41844 -31.74777 -31.22066 -29.03733 -27.78750 -26.81509 -25.11469 -23.61308 -23.44554 -23.17634 -21.94246 -20.99608 -20.02572 -19.81774 -18.83366 -18.20347 -17.74753 -16.85656 -16.58659 -16.50964 -16.26347 -15.85663 -15.80064 -15.50419 -15.33398 -15.19555 -15.01210 -14.90403 -14.74105 -14.59021 -14.37867 -14.10374 -13.59750 -13.52604 -12.96295 -12.94478 -12.74396 -12.44511 -12.29741 -12.22866 -12.17574 -12.13700 -12.02192 -11.86590 -11.57982 -11.54093 -11.16238 -10.86330 -10.71104 -10.17592 -9.73424 -8.88249 -8.65332 -8.46526 -6.14680 0.64470 0.68988 0.75426 1.33514 1.40209 1.44367 1.48842 1.50334 2.16014 2.18012 2.27747 2.86619 3.19358 3.51269 3.54689 3.65016 3.80114 3.84256 3.87067 4.07199 4.08941 4.20408 4.23614 4.34322 4.48125 4.50493 4.53313 4.60928 4.64045 4.75240 4.78906 4.83353 4.88384 4.97249 5.06165 5.11304 5.14539 5.15930 5.21780 5.33146 5.33505 5.59299 5.73963 5.80597 5.81416 6.03952 6.10079 6.26085 6.56410 6.73582 6.97877 7.37243 7.79813 8.76729 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.023582 B = 0.001929 C = 0.001869 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1187.050212 B =14508.337471 C =14979.843876 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.025 4.025 3 Si 1.019 2.981 4 H -0.254 1.254 5 H -0.270 1.270 6 H -0.261 1.261 7 C -0.414 4.414 8 H 0.100 0.900 9 O -0.234 6.234 10 C 0.111 3.889 11 C -0.245 4.245 12 C -0.059 4.059 13 C -0.145 4.145 14 C -0.070 4.070 15 C 0.508 3.492 16 O -0.565 6.565 17 N -0.628 5.628 18 C -0.015 4.015 19 C 0.023 3.977 20 N -0.325 5.325 21 N -0.369 5.369 22 C 0.060 3.940 23 C -0.055 4.055 24 C -0.122 4.122 25 C -0.129 4.129 26 C 0.124 3.876 27 C -0.056 4.056 28 C -0.208 4.208 29 H 0.272 0.728 30 H 0.116 0.884 31 H 0.139 0.861 32 H 0.135 0.865 33 H 0.137 0.863 34 H 0.428 0.572 35 H 0.178 0.822 36 H 0.109 0.891 37 H 0.106 0.894 38 H 0.066 0.934 39 H 0.107 0.893 40 H 0.118 0.882 41 H 0.075 0.925 42 H 0.090 0.910 43 H 0.091 0.909 44 H 0.148 0.852 45 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.286 -30.584 4.449 37.527 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.222 4.222 3 Si 0.838 3.162 4 H -0.178 1.178 5 H -0.194 1.194 6 H -0.186 1.186 7 C -0.490 4.490 8 H 0.117 0.883 9 O -0.141 6.141 10 C 0.061 3.939 11 C -0.265 4.265 12 C -0.077 4.077 13 C -0.146 4.146 14 C -0.109 4.109 15 C 0.297 3.703 16 O -0.442 6.442 17 N -0.276 5.276 18 C -0.119 4.119 19 C -0.162 4.162 20 N -0.148 5.148 21 N -0.156 5.156 22 C -0.070 4.070 23 C -0.094 4.094 24 C -0.160 4.160 25 C -0.167 4.167 26 C 0.004 3.996 27 C -0.074 4.074 28 C -0.227 4.227 29 H 0.081 0.919 30 H 0.134 0.866 31 H 0.157 0.843 32 H 0.153 0.847 33 H 0.155 0.845 34 H 0.267 0.733 35 H 0.195 0.805 36 H 0.127 0.873 37 H 0.124 0.876 38 H 0.085 0.915 39 H 0.126 0.874 40 H 0.136 0.864 41 H 0.093 0.907 42 H 0.108 0.892 43 H 0.110 0.890 44 H 0.165 0.835 45 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 20.671 -29.873 6.380 36.883 hybrid contribution -0.392 1.401 -0.682 1.607 sum 20.278 -28.472 5.698 35.416 Atomic orbital electron populations 1.70185 1.07996 1.28808 1.49000 1.26616 0.96914 1.02778 0.95932 0.84645 0.77397 0.74243 0.79892 1.17826 1.19445 1.18552 1.21775 0.92466 0.81541 1.53219 0.88293 1.83933 1.35986 1.12604 1.81615 1.19954 0.91697 0.87963 0.94257 1.21229 0.93108 1.00063 1.12062 1.20949 0.99728 0.91127 0.95876 1.19230 0.93265 0.94521 1.07544 1.20496 1.03014 0.96584 0.90804 1.21411 0.76836 0.79500 0.92577 1.90660 1.51848 1.48592 1.53135 1.42687 1.53329 1.27296 1.04261 1.17384 1.09486 0.99132 0.85880 1.24378 1.01404 1.01309 0.89122 1.77245 1.14498 0.99184 1.23889 1.48838 1.41710 1.19837 1.05178 1.21081 1.01988 0.98806 0.85124 1.20660 0.98483 0.92780 0.97446 1.21681 0.97390 1.02264 0.94654 1.21982 1.02950 0.94334 0.97446 1.22185 0.97193 0.87818 0.92400 1.20892 0.93575 0.96894 0.96031 1.20448 0.99866 0.90762 1.11636 0.91865 0.86609 0.84307 0.84709 0.84471 0.73263 0.80501 0.87324 0.87625 0.91525 0.87437 0.86359 0.90661 0.89203 0.89026 0.83454 0.87149 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -58.73 13.67 21.61 0.30 -58.44 16 2 C -0.03 -1.50 5.49 84.83 0.47 -1.03 16 3 Si 1.02 44.81 29.55 68.60 2.03 46.84 16 4 H -0.25 -10.37 7.11 99.48 0.71 -9.66 16 5 H -0.27 -11.33 7.11 99.48 0.71 -10.63 16 6 H -0.26 -10.94 7.11 99.48 0.71 -10.24 16 7 C -0.41 -25.34 9.49 67.92 0.64 -24.69 16 8 H 0.10 5.59 5.20 -2.91 -0.02 5.57 16 9 O -0.23 -14.91 9.76 -22.70 -0.22 -15.13 16 10 C 0.11 5.92 6.65 22.58 0.15 6.07 16 11 C -0.25 -11.42 9.17 22.39 0.21 -11.21 16 12 C -0.06 -2.13 9.69 22.25 0.22 -1.91 16 13 C -0.14 -4.53 4.38 -19.83 -0.09 -4.62 16 14 C -0.07 -1.29 5.83 29.10 0.17 -1.12 16 15 C 0.51 12.38 7.79 87.66 0.68 13.06 16 16 O -0.57 -20.51 13.20 -3.10 -0.04 -20.55 16 17 N -0.63 -11.06 5.47 -304.32 -1.67 -12.73 16 18 C -0.01 -0.34 6.87 37.53 0.26 -0.08 16 19 C 0.02 0.74 10.85 85.36 0.93 1.66 16 20 N -0.33 -9.79 12.61 -56.52 -0.71 -10.50 16 21 N -0.37 -7.66 4.06 -333.19 -1.35 -9.01 16 22 C 0.06 1.04 6.62 41.21 0.27 1.31 16 23 C -0.06 -0.32 6.11 30.04 0.18 -0.14 16 24 C -0.12 -0.34 5.97 30.79 0.18 -0.16 16 25 C -0.13 -0.49 5.92 30.72 0.18 -0.31 16 26 C 0.12 1.39 7.28 86.45 0.63 2.02 16 27 C -0.06 -1.97 9.69 22.25 0.22 -1.75 16 28 C -0.21 -9.48 9.99 22.39 0.22 -9.26 16 29 H 0.27 15.90 8.31 -92.71 -0.77 15.13 16 30 H 0.12 5.48 5.64 -2.91 -0.02 5.46 16 31 H 0.14 4.03 8.06 -2.91 -0.02 4.00 16 32 H 0.14 1.56 8.08 -2.39 -0.02 1.54 16 33 H 0.14 1.53 8.08 -2.39 -0.02 1.51 16 34 H 0.43 3.30 8.63 -92.71 -0.80 2.50 16 35 H 0.18 6.53 5.93 -2.91 -0.02 6.51 16 36 H 0.11 0.26 8.14 -2.39 -0.02 0.24 16 37 H 0.11 0.31 8.14 -2.39 -0.02 0.29 16 38 H 0.07 0.29 8.12 -2.38 -0.02 0.27 16 39 H 0.11 -0.19 8.14 -2.39 -0.02 -0.21 16 40 H 0.12 -0.13 8.14 -2.39 -0.02 -0.15 16 41 H 0.07 0.35 8.11 -2.39 -0.02 0.33 16 42 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 43 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 44 H 0.15 4.01 8.06 -2.91 -0.02 3.99 16 45 H 0.11 5.00 8.06 -2.91 -0.02 4.97 16 Total: -1.00 -92.51 376.58 4.09 -88.42 By element: Atomic # 1 Polarization: 23.04 SS G_CDS: 0.24 Total: 23.28 kcal Atomic # 6 Polarization: -37.70 SS G_CDS: 5.52 Total: -32.17 kcal Atomic # 7 Polarization: -87.25 SS G_CDS: -3.44 Total: -90.68 kcal Atomic # 8 Polarization: -35.42 SS G_CDS: -0.26 Total: -35.68 kcal Atomic # 14 Polarization: 44.81 SS G_CDS: 2.03 Total: 46.84 kcal Total: -92.51 4.09 -88.42 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000870694614.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.495 kcal (2) G-P(sol) polarization free energy of solvation -92.508 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.422 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.073 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds