Wall clock time and date at job start Sat Apr 11 2020 06:19:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30821 * 1 3 3 Si 1.86794 * 120.00065 * 2 1 4 4 H 1.48496 * 109.47373 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47179 * 299.99787 * 3 2 1 6 6 H 1.48503 * 109.47456 * 59.99361 * 3 2 1 7 7 C 1.39947 * 120.00278 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00688 * 197.74141 * 7 2 1 9 9 C 1.41397 * 119.99746 * 17.73983 * 7 2 1 10 10 C 1.40717 * 120.24553 * 204.28899 * 9 7 2 11 11 C 1.37620 * 119.74444 * 179.70220 * 10 9 7 12 12 C 1.38636 * 120.25102 * 0.27063 * 11 10 9 13 13 C 1.50692 * 119.74883 * 179.97438 * 12 11 10 14 14 N 1.46502 * 109.47212 * 90.00023 * 13 12 11 15 15 C 1.35319 * 125.86410 * 124.71439 * 14 13 12 16 16 C 1.35353 * 106.16990 * 179.90641 * 15 14 13 17 17 C 1.50701 * 126.74849 * 180.12236 * 16 15 14 18 18 C 1.53852 * 113.60582 * 14.41876 * 17 16 15 19 19 C 1.53559 * 86.90751 * 220.32164 * 18 17 16 20 20 C 1.53378 * 87.50733 * 25.14528 * 19 18 17 21 21 O 1.43330 * 114.61636 * 141.14281 * 19 18 17 22 22 C 1.44888 * 104.66670 * 106.45786 * 21 19 18 23 23 C 1.54943 * 101.79428 * 35.66817 * 22 21 19 24 24 O 1.42946 * 114.71935 * 268.87085 * 19 18 17 25 25 N 1.33768 * 106.49846 * 0.34994 * 16 15 14 26 26 N 1.28640 * 108.88573 * 359.77780 * 25 16 15 27 27 C 1.38638 * 120.49555 * 0.02562 * 12 11 10 28 28 C 1.37612 * 120.25475 * 359.97438 * 27 12 11 29 29 H 0.96999 * 120.00115 * 0.02562 * 1 2 3 30 30 H 1.08002 * 120.12690 * 359.97139 * 10 9 7 31 31 H 1.08001 * 119.87007 * 180.29792 * 11 10 9 32 32 H 1.09005 * 109.47111 * 209.99845 * 13 12 11 33 33 H 1.08998 * 109.47398 * 329.99950 * 13 12 11 34 34 H 1.07995 * 126.91606 * 0.02562 * 15 14 13 35 35 H 1.08999 * 112.83671 * 145.57764 * 17 16 15 36 36 H 1.08999 * 113.62778 * 334.81123 * 18 17 16 37 37 H 1.08996 * 113.63037 * 105.77049 * 18 17 16 38 38 H 1.09003 * 113.63443 * 220.33128 * 20 19 18 39 39 H 1.09003 * 113.62869 * 89.37888 * 20 19 18 40 40 H 1.08996 * 110.96877 * 277.53917 * 22 21 19 41 41 H 1.09006 * 110.96189 * 153.79130 * 22 21 19 42 42 H 1.08999 * 110.69113 * 206.27503 * 23 22 21 43 43 H 1.09007 * 110.69116 * 83.08828 * 23 22 21 44 44 H 1.08003 * 119.86924 * 179.97438 * 27 12 11 45 45 H 1.07995 * 120.13061 * 180.02562 * 28 27 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 3.7022 1.3464 0.0006 5 1 1.8835 2.3964 -1.2125 6 1 1.8834 2.3965 1.2124 7 6 2.0080 -1.2119 0.0005 8 1 3.0495 -1.2341 0.2855 9 6 1.3514 -2.4075 -0.3720 10 6 1.8271 -3.6499 0.0865 11 6 1.1765 -4.8067 -0.2775 12 6 0.0599 -4.7516 -1.0973 13 6 -0.6435 -6.0254 -1.4893 14 7 -1.6830 -6.3324 -0.5037 15 6 -2.9939 -6.5355 -0.7712 16 6 -3.5865 -6.7893 0.4190 17 6 -5.0454 -7.0840 0.6551 18 6 -5.8204 -7.4271 -0.6290 19 6 -6.9709 -6.5837 -0.0607 20 6 -5.9201 -5.8224 0.7570 21 8 -7.6635 -5.7878 -1.0308 22 6 -8.9337 -6.4595 -1.2172 23 6 -9.2307 -6.9776 0.2125 24 8 -7.9214 -7.3158 0.7166 25 7 -2.6234 -6.7223 1.3449 26 7 -1.5074 -6.4499 0.7659 27 6 -0.4139 -3.5336 -1.5599 28 6 0.2208 -2.3642 -1.2087 29 1 -0.4850 0.8400 -0.0004 30 1 2.6969 -3.6951 0.7252 31 1 1.5370 -5.7610 0.0772 32 1 -1.0994 -5.9011 -2.4716 33 1 0.0771 -6.8425 -1.5239 34 1 -3.4708 -6.5036 -1.7395 35 1 -5.2077 -7.7943 1.4658 36 1 -5.3765 -7.0084 -1.5321 37 1 -6.0596 -8.4861 -0.7251 38 1 -6.2394 -5.5930 1.7736 39 1 -5.5039 -4.9591 0.2378 40 1 -8.8378 -7.2872 -1.9198 41 1 -9.7012 -5.7584 -1.5452 42 1 -9.8697 -7.8599 0.1774 43 1 -9.6865 -6.1947 0.8189 44 1 -1.2844 -3.5025 -2.1984 45 1 -0.1502 -1.4164 -1.5699 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000881298337.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:24 Heat of formation + Delta-G solvation = 53.074396 kcal Electronic energy + Delta-G solvation = -28508.801898 eV Core-core repulsion = 24494.191032 eV Total energy + Delta-G solvation = -4014.610866 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.83129 -41.07621 -37.84775 -37.28693 -35.32087 -34.72188 -33.36180 -30.88150 -30.46724 -29.44246 -29.22663 -27.42058 -26.10032 -24.77130 -24.38060 -23.61317 -21.79009 -21.30928 -21.09438 -19.96707 -19.44253 -17.64011 -17.43412 -17.03936 -16.66950 -16.12884 -15.77588 -15.46033 -15.28582 -14.79255 -14.28754 -14.19403 -14.15311 -13.86677 -13.81892 -13.24768 -13.00903 -12.69671 -12.61715 -12.49271 -12.15066 -12.08314 -11.84733 -11.67994 -11.46899 -11.30143 -11.18417 -11.09246 -10.83785 -10.78486 -10.56730 -10.52391 -10.33703 -9.94657 -9.69807 -9.53699 -9.42761 -9.26991 -8.74321 -7.62041 -7.49858 -6.90860 -4.50819 2.04808 2.39025 2.88668 2.89882 2.97855 3.00833 3.06035 3.07958 3.31610 3.51949 3.82994 4.16131 4.31415 4.38669 4.47818 4.52325 4.63923 4.70282 4.80858 4.97161 5.04500 5.14007 5.19176 5.27438 5.46704 5.48001 5.53364 5.57873 5.60194 5.61733 5.73155 5.84033 5.90369 6.08381 6.17226 6.26551 6.35410 6.48701 6.82993 6.88142 6.93506 7.06421 7.12746 7.21489 7.47143 7.68663 7.91103 7.92865 8.15326 8.49422 8.74566 8.82118 9.02160 10.02829 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.014553 B = 0.002357 C = 0.002141 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1923.551999 B =11879.069287 C =13076.491086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.783 5.783 2 C 0.074 3.926 3 Si 0.911 3.089 4 H -0.259 1.259 5 H -0.270 1.270 6 H -0.273 1.273 7 C -0.453 4.453 8 H 0.082 0.918 9 C 0.121 3.879 10 C -0.230 4.230 11 C -0.049 4.049 12 C -0.258 4.258 13 C 0.175 3.825 14 N -0.269 5.269 15 C -0.058 4.058 16 C -0.021 4.021 17 C -0.009 4.009 18 C -0.145 4.145 19 C 0.232 3.768 20 C -0.124 4.124 21 O -0.360 6.360 22 C 0.014 3.986 23 C 0.019 3.981 24 O -0.359 6.359 25 N -0.282 5.282 26 N -0.064 5.064 27 C -0.077 4.077 28 C -0.171 4.171 29 H 0.283 0.717 30 H 0.095 0.905 31 H 0.091 0.909 32 H 0.095 0.905 33 H 0.090 0.910 34 H 0.180 0.820 35 H 0.111 0.889 36 H 0.102 0.898 37 H 0.083 0.917 38 H 0.086 0.914 39 H 0.103 0.897 40 H 0.076 0.924 41 H 0.108 0.892 42 H 0.100 0.900 43 H 0.078 0.922 44 H 0.085 0.915 45 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.908 -11.355 -5.575 20.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.407 5.407 2 C -0.145 4.145 3 Si 0.734 3.266 4 H -0.182 1.182 5 H -0.195 1.195 6 H -0.198 1.198 7 C -0.481 4.481 8 H 0.100 0.900 9 C 0.118 3.882 10 C -0.249 4.249 11 C -0.068 4.068 12 C -0.260 4.260 13 C 0.057 3.943 14 N -0.063 5.063 15 C -0.210 4.210 16 C -0.160 4.160 17 C -0.029 4.029 18 C -0.184 4.184 19 C 0.155 3.845 20 C -0.163 4.163 21 O -0.280 6.280 22 C -0.063 4.063 23 C -0.057 4.057 24 O -0.279 6.279 25 N -0.147 5.147 26 N -0.044 5.044 27 C -0.096 4.096 28 C -0.191 4.191 29 H 0.094 0.906 30 H 0.113 0.887 31 H 0.109 0.891 32 H 0.113 0.887 33 H 0.108 0.892 34 H 0.197 0.803 35 H 0.129 0.871 36 H 0.121 0.879 37 H 0.102 0.898 38 H 0.105 0.895 39 H 0.122 0.878 40 H 0.095 0.905 41 H 0.126 0.874 42 H 0.119 0.881 43 H 0.096 0.904 44 H 0.104 0.896 45 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -14.899 -11.097 -4.365 19.083 hybrid contribution -0.640 0.840 -1.040 1.482 sum -15.539 -10.257 -5.405 19.388 Atomic orbital electron populations 1.69836 1.07733 1.29532 1.33571 1.26000 0.94766 1.01662 0.92087 0.86218 0.81027 0.80589 0.78720 1.18214 1.19550 1.19807 1.19742 0.98268 0.91206 1.38925 0.90030 1.17706 0.90686 0.92147 0.87660 1.20966 1.04107 0.92696 1.07166 1.20350 0.94401 0.96781 0.95246 1.18706 1.02501 0.91694 1.13109 1.20859 0.87393 0.98051 0.87957 1.48146 1.08004 1.42395 1.07710 1.23229 0.85485 1.10698 1.01587 1.21437 0.96410 1.08209 0.89902 1.20364 0.86137 0.97992 0.98454 1.23841 0.94692 1.01238 0.98585 1.24395 0.87479 0.87901 0.84772 1.23533 0.93327 0.98148 1.01264 1.89264 1.29269 1.49229 1.60271 1.24392 0.86703 0.98207 0.96970 1.24265 0.85898 1.01664 0.93898 1.88835 1.14997 1.66743 1.57368 1.75038 0.95473 1.17138 1.27070 1.78319 1.19263 1.17082 0.89733 1.20472 0.97583 0.92646 0.98921 1.21261 0.99660 0.96610 1.01520 0.90614 0.88668 0.89079 0.88669 0.89200 0.80278 0.87140 0.87924 0.89834 0.89509 0.87843 0.90547 0.87411 0.88146 0.90398 0.89645 0.86329 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -19.96 10.96 55.55 0.61 -19.35 16 2 C 0.07 1.82 5.14 -17.34 -0.09 1.74 16 3 Si 0.91 18.20 29.59 -169.99 -5.03 13.17 16 4 H -0.26 -5.11 7.11 56.52 0.40 -4.70 16 5 H -0.27 -5.29 7.11 56.52 0.40 -4.89 16 6 H -0.27 -5.40 7.11 56.52 0.40 -5.00 16 7 C -0.45 -11.76 9.05 -37.74 -0.34 -12.10 16 8 H 0.08 2.03 7.91 -52.49 -0.41 1.62 16 9 C 0.12 3.17 5.57 -106.82 -0.60 2.57 16 10 C -0.23 -5.58 9.80 -38.87 -0.38 -5.96 16 11 C -0.05 -1.07 9.67 -39.66 -0.38 -1.46 16 12 C -0.26 -5.32 5.27 -104.33 -0.55 -5.86 16 13 C 0.18 2.81 6.57 -5.20 -0.03 2.77 16 14 N -0.27 -4.72 3.43 -62.44 -0.21 -4.94 16 15 C -0.06 -0.87 10.75 -17.04 -0.18 -1.06 16 16 C -0.02 -0.33 6.63 -82.78 -0.55 -0.88 16 17 C -0.01 -0.12 4.27 -90.89 -0.39 -0.50 16 18 C -0.15 -1.50 7.22 -26.00 -0.19 -1.69 16 19 C 0.23 2.59 1.84 -26.25 -0.05 2.54 16 20 C -0.12 -1.57 7.37 -26.10 -0.19 -1.76 16 21 O -0.36 -4.01 11.42 -59.03 -0.67 -4.69 16 22 C 0.01 0.10 7.96 38.18 0.30 0.40 16 23 C 0.02 0.14 8.08 38.18 0.31 0.44 16 24 O -0.36 -3.88 11.28 -59.03 -0.67 -4.55 16 25 N -0.28 -5.58 12.41 33.29 0.41 -5.17 16 26 N -0.06 -1.33 12.92 60.35 0.78 -0.55 16 27 C -0.08 -1.72 9.67 -39.66 -0.38 -2.10 16 28 C -0.17 -4.33 8.70 -38.87 -0.34 -4.67 16 29 H 0.28 6.52 8.30 -40.82 -0.34 6.18 16 30 H 0.10 2.19 8.06 -52.49 -0.42 1.77 16 31 H 0.09 1.81 8.06 -52.49 -0.42 1.39 16 32 H 0.10 1.22 8.01 -51.93 -0.42 0.81 16 33 H 0.09 1.27 8.08 -51.93 -0.42 0.86 16 34 H 0.18 1.96 6.93 -52.49 -0.36 1.60 16 35 H 0.11 1.40 8.14 -51.93 -0.42 0.97 16 36 H 0.10 0.98 6.53 -51.93 -0.34 0.64 16 37 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 38 H 0.09 1.08 8.14 -51.93 -0.42 0.65 16 39 H 0.10 1.40 8.09 -51.93 -0.42 0.98 16 40 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 41 H 0.11 0.53 8.14 -51.93 -0.42 0.10 16 42 H 0.10 0.47 8.14 -51.93 -0.42 0.05 16 43 H 0.08 0.50 8.14 -51.92 -0.42 0.08 16 44 H 0.09 1.70 8.06 -52.48 -0.42 1.28 16 45 H 0.12 3.10 6.16 -52.49 -0.32 2.78 16 LS Contribution 378.06 15.07 5.70 5.70 Total: -1.00 -31.25 378.06 -9.18 -40.43 By element: Atomic # 1 Polarization: 13.58 SS G_CDS: -6.06 Total: 7.52 kcal Atomic # 6 Polarization: -23.54 SS G_CDS: -4.03 Total: -27.57 kcal Atomic # 7 Polarization: -31.60 SS G_CDS: 1.59 Total: -30.01 kcal Atomic # 8 Polarization: -7.90 SS G_CDS: -1.34 Total: -9.24 kcal Atomic # 14 Polarization: 18.20 SS G_CDS: -5.03 Total: 13.17 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -31.25 -9.18 -40.43 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881298337.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.506 kcal (2) G-P(sol) polarization free energy of solvation -31.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.177 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.431 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.074 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds