Wall clock time and date at job start Sat Apr 11 2020 06:19:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30821 * 1 3 3 Si 1.86801 * 120.00074 * 2 1 4 4 H 1.48503 * 109.46816 * 90.00087 * 3 2 1 5 5 H 1.48491 * 109.47175 * 210.00274 * 3 2 1 6 6 H 1.48496 * 109.47127 * 330.00263 * 3 2 1 7 7 C 1.39946 * 120.00035 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00043 * 162.29630 * 7 2 1 9 9 C 1.41399 * 119.99947 * 342.29492 * 7 2 1 10 10 C 1.40719 * 120.24157 * 335.44536 * 9 7 2 11 11 C 1.37617 * 119.73948 * 179.72203 * 10 9 7 12 12 C 1.38629 * 120.25223 * 0.53460 * 11 10 9 13 13 C 1.50705 * 119.75142 * 179.73729 * 12 11 10 14 14 O 1.45199 * 109.47261 * 270.02593 * 13 12 11 15 15 C 1.34227 * 116.99963 * 180.02562 * 14 13 12 16 16 O 1.20829 * 120.00127 * 0.02562 * 15 14 13 17 17 C 1.50700 * 120.00255 * 179.97438 * 15 14 13 18 18 H 1.08998 * 107.87902 * 300.00031 * 17 15 14 19 19 C 1.50953 * 108.02523 * 56.55146 * 17 15 14 20 20 C 1.53708 * 110.94393 * 194.32330 * 19 17 15 21 21 C 1.51886 * 106.86527 * 280.85716 * 20 19 17 22 22 N 1.29895 * 127.81180 * 245.31554 * 21 20 19 23 23 N 1.29031 * 109.22566 * 179.63449 * 22 21 20 24 24 C 1.30980 * 109.70814 * 0.06879 * 23 22 21 25 25 N 1.34601 * 124.56869 * 65.11195 * 21 20 19 26 26 C 1.47499 * 125.03568 * 0.50265 * 25 21 20 27 27 C 1.50856 * 108.03034 * 183.44696 * 17 15 14 28 28 C 1.38638 * 120.49891 * 359.76079 * 12 11 10 29 29 C 1.37613 * 120.24807 * 359.96063 * 28 12 11 30 30 H 0.97004 * 120.00360 * 359.97438 * 1 2 3 31 31 H 1.07999 * 120.12475 * 0.02562 * 10 9 7 32 32 H 1.08008 * 119.87000 * 180.27116 * 11 10 9 33 33 H 1.09000 * 109.46594 * 30.02778 * 13 12 11 34 34 H 1.08997 * 109.46581 * 150.02104 * 13 12 11 35 35 H 1.09005 * 109.18301 * 314.66635 * 19 17 15 36 36 H 1.08994 * 109.18113 * 73.90700 * 19 17 15 37 37 H 1.08998 * 109.96632 * 161.53051 * 20 19 17 38 38 H 1.08994 * 110.06859 * 40.24927 * 20 19 17 39 39 H 1.07987 * 126.61085 * 180.02562 * 24 23 22 40 40 H 1.08993 * 109.93159 * 174.64926 * 26 25 21 41 41 H 1.08998 * 109.93104 * 53.43484 * 26 25 21 42 42 H 1.08996 * 109.15301 * 285.98567 * 27 17 15 43 43 H 1.09007 * 109.14632 * 45.19536 * 27 17 15 44 44 H 1.07997 * 119.87117 * 179.97438 * 28 12 11 45 45 H 1.08004 * 120.12624 * 179.97438 * 29 28 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 2.4897 2.0463 1.4001 5 1 3.5397 1.4402 -0.7001 6 1 1.4397 2.6527 -0.7000 7 6 2.0079 -1.2120 -0.0005 8 1 3.0496 -1.2340 -0.2850 9 6 1.3512 -2.4077 0.3713 10 6 0.2201 -2.3645 1.2074 11 6 -0.4145 -3.5341 1.5582 12 6 0.0630 -4.7523 1.1003 13 6 -0.6373 -6.0267 1.4963 14 8 -0.0580 -6.5350 2.7268 15 6 -0.5727 -7.6733 3.2180 16 8 -1.4770 -8.2268 2.6385 17 6 -0.0220 -8.2615 4.4914 18 1 1.0346 -8.4759 4.3314 19 6 -0.1276 -7.2143 5.5735 20 6 0.7236 -7.5981 6.7945 21 6 -0.0697 -8.6294 7.5781 22 7 -0.5698 -8.5111 8.7711 23 7 -1.1814 -9.6028 9.0856 24 6 -1.0907 -10.4598 8.0993 25 7 -0.3811 -9.8583 7.1259 26 6 0.0055 -10.3992 5.8092 27 6 -0.7303 -9.5687 4.7465 28 6 1.1801 -4.8072 0.2811 29 6 1.8272 -3.6499 -0.0871 30 1 -0.4851 0.8400 0.0004 31 1 -0.1513 -1.4168 1.5683 32 1 -1.2855 -3.5031 2.1963 33 1 -1.6976 -5.8260 1.6495 34 1 -0.5183 -6.7674 0.7055 35 1 0.2196 -6.2581 5.1818 36 1 -1.1696 -7.1183 5.8785 37 1 0.9047 -6.7191 7.4131 38 1 1.6719 -8.0261 6.4697 39 1 -1.5044 -11.4570 8.0724 40 1 -0.2921 -11.4451 5.7352 41 1 1.0830 -10.3078 5.6718 42 1 -1.7441 -9.3648 5.0910 43 1 -0.7761 -10.1377 3.8179 44 1 1.5436 -5.7618 -0.0695 45 1 2.6976 -3.6950 -0.7250 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000884889945.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:27 Heat of formation + Delta-G solvation = 1.756907 kcal Electronic energy + Delta-G solvation = -28395.816208 eV Core-core repulsion = 24378.980048 eV Total energy + Delta-G solvation = -4016.836159 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -43.55702 -40.62335 -38.03646 -37.41858 -36.15059 -34.65382 -33.91829 -32.47510 -30.90734 -30.19630 -29.43373 -27.90226 -26.94226 -24.75072 -24.00522 -22.72266 -22.41877 -21.15595 -20.57616 -20.26206 -20.11557 -18.03986 -17.52724 -17.43981 -16.68195 -16.37827 -16.03358 -15.46401 -15.34596 -15.08278 -14.68141 -14.56199 -14.11861 -13.92316 -13.58166 -13.22080 -13.12204 -12.81959 -12.62291 -12.40798 -12.27913 -12.12088 -12.08593 -11.68198 -11.60524 -11.36041 -11.32103 -11.26889 -11.19892 -10.71409 -10.66092 -10.58555 -10.49309 -10.28227 -10.23442 -9.75483 -9.52281 -9.43309 -9.27707 -7.62809 -7.52230 -6.92173 -4.52005 1.59676 2.16070 2.22314 2.33331 2.66458 2.87063 2.94957 3.00108 3.02695 3.22306 3.81744 3.83952 3.99297 4.10770 4.22061 4.35530 4.41148 4.52783 4.60227 4.64555 4.84879 4.97013 5.05018 5.14426 5.32160 5.42975 5.53221 5.54276 5.57871 5.62475 5.69742 5.70049 5.78999 5.93138 6.00416 6.17806 6.24786 6.55684 6.71068 6.81444 6.92427 7.11926 7.20398 7.45478 7.67058 7.87808 7.90357 7.94419 8.13456 8.48336 8.50099 8.73110 8.80817 10.01800 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.019393 B = 0.002064 C = 0.001942 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1443.457743 B =13562.450953 C =14414.263186 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.785 5.785 2 C 0.075 3.925 3 Si 0.911 3.089 4 H -0.266 1.266 5 H -0.261 1.261 6 H -0.277 1.277 7 C -0.455 4.455 8 H 0.081 0.919 9 C 0.119 3.881 10 C -0.170 4.170 11 C -0.075 4.075 12 C -0.238 4.238 13 C 0.136 3.864 14 O -0.347 6.347 15 C 0.456 3.544 16 O -0.519 6.519 17 C -0.083 4.083 18 H 0.108 0.892 19 C -0.116 4.116 20 C -0.029 4.029 21 C 0.178 3.822 22 N -0.294 5.294 23 N -0.304 5.304 24 C 0.147 3.853 25 N -0.471 5.471 26 C 0.108 3.892 27 C -0.125 4.125 28 C -0.063 4.063 29 C -0.231 4.231 30 H 0.283 0.717 31 H 0.120 0.880 32 H 0.088 0.912 33 H 0.062 0.938 34 H 0.061 0.939 35 H 0.104 0.896 36 H 0.074 0.926 37 H 0.111 0.889 38 H 0.092 0.908 39 H 0.218 0.782 40 H 0.109 0.891 41 H 0.101 0.899 42 H 0.082 0.918 43 H 0.103 0.897 44 H 0.088 0.912 45 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.153 -17.184 8.781 19.332 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.409 5.409 2 C -0.144 4.144 3 Si 0.735 3.265 4 H -0.191 1.191 5 H -0.185 1.185 6 H -0.202 1.202 7 C -0.484 4.484 8 H 0.099 0.901 9 C 0.116 3.884 10 C -0.190 4.190 11 C -0.093 4.093 12 C -0.239 4.239 13 C 0.065 3.935 14 O -0.263 6.263 15 C 0.299 3.701 16 O -0.409 6.409 17 C -0.102 4.102 18 H 0.126 0.874 19 C -0.155 4.155 20 C -0.069 4.069 21 C -0.090 4.090 22 N -0.134 5.134 23 N -0.144 5.144 24 C -0.140 4.140 25 N -0.162 5.162 26 C -0.015 4.015 27 C -0.163 4.163 28 C -0.082 4.082 29 C -0.250 4.250 30 H 0.094 0.906 31 H 0.138 0.862 32 H 0.107 0.893 33 H 0.080 0.920 34 H 0.079 0.921 35 H 0.123 0.877 36 H 0.092 0.908 37 H 0.129 0.871 38 H 0.111 0.889 39 H 0.234 0.766 40 H 0.128 0.872 41 H 0.119 0.881 42 H 0.100 0.900 43 H 0.121 0.879 44 H 0.106 0.894 45 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 0.293 -16.566 9.884 19.293 hybrid contribution 0.394 -0.017 -1.509 1.559 sum 0.686 -16.583 8.375 18.590 Atomic orbital electron populations 1.69816 1.07696 1.29623 1.33788 1.25985 0.94782 1.01608 0.92056 0.86258 0.80490 0.80229 0.79505 1.19074 1.18487 1.20190 1.19697 0.98225 0.91203 1.39250 0.90110 1.17697 0.90805 0.92094 0.87791 1.21310 0.99391 0.96777 1.01477 1.20532 0.98051 0.92562 0.98188 1.18631 1.03278 0.91404 1.10596 1.21747 0.96105 0.93957 0.81727 1.86694 1.59934 1.37488 1.42193 1.23543 0.80709 0.79710 0.86142 1.90636 1.28888 1.61035 1.60302 1.20439 1.02651 0.95330 0.91749 0.87387 1.21384 1.01795 0.99124 0.93153 1.20573 0.95996 0.95693 0.94612 1.24963 1.02723 0.87438 0.93907 1.74258 1.11984 1.16806 1.10340 1.74541 1.18336 0.97993 1.23488 1.26340 0.99598 1.02011 0.86092 1.46363 1.40586 1.13208 1.16090 1.22484 1.01428 0.99238 0.78321 1.21600 1.00175 0.94675 0.99872 1.20372 0.94290 0.96574 0.96933 1.20947 1.03866 0.92775 1.07443 0.90561 0.86226 0.89347 0.92010 0.92085 0.87737 0.90751 0.87074 0.88920 0.76577 0.87238 0.88119 0.89978 0.87888 0.89365 0.88709 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -19.40 10.95 55.55 0.61 -18.79 16 2 C 0.07 1.79 5.14 -17.34 -0.09 1.70 16 3 Si 0.91 17.77 29.59 -169.99 -5.03 12.74 16 4 H -0.27 -5.14 7.11 56.52 0.40 -4.73 16 5 H -0.26 -5.03 7.11 56.52 0.40 -4.63 16 6 H -0.28 -5.30 7.11 56.52 0.40 -4.89 16 7 C -0.46 -11.49 9.05 -37.74 -0.34 -11.84 16 8 H 0.08 1.95 7.91 -52.49 -0.41 1.54 16 9 C 0.12 3.03 5.57 -106.82 -0.60 2.43 16 10 C -0.17 -4.23 8.70 -38.87 -0.34 -4.57 16 11 C -0.07 -1.67 9.67 -39.66 -0.38 -2.06 16 12 C -0.24 -4.98 5.54 -104.33 -0.58 -5.56 16 13 C 0.14 2.42 5.58 36.01 0.20 2.62 16 14 O -0.35 -5.55 9.58 -39.25 -0.38 -5.93 16 15 C 0.46 6.11 7.16 36.01 0.26 6.37 16 16 O -0.52 -8.19 15.33 -18.75 -0.29 -8.48 16 17 C -0.08 -0.71 2.04 -93.88 -0.19 -0.90 16 18 H 0.11 0.70 7.67 -51.93 -0.40 0.30 16 19 C -0.12 -1.04 4.90 -27.39 -0.13 -1.17 16 20 C -0.03 -0.23 6.02 -26.93 -0.16 -0.39 16 21 C 0.18 1.82 7.02 -155.74 -1.09 0.73 16 22 N -0.29 -4.04 12.23 32.85 0.40 -3.64 16 23 N -0.30 -3.99 12.25 29.60 0.36 -3.63 16 24 C 0.15 1.28 12.83 -90.34 -1.16 0.12 16 25 N -0.47 -3.72 2.72 -114.24 -0.31 -4.03 16 26 C 0.11 0.47 6.53 -3.16 -0.02 0.45 16 27 C -0.13 -0.87 4.45 -27.48 -0.12 -0.99 16 28 C -0.06 -1.35 9.67 -39.66 -0.38 -1.73 16 29 C -0.23 -5.39 9.80 -38.88 -0.38 -5.77 16 30 H 0.28 6.35 8.30 -40.82 -0.34 6.01 16 31 H 0.12 3.07 6.16 -52.49 -0.32 2.74 16 32 H 0.09 1.80 8.06 -52.48 -0.42 1.38 16 33 H 0.06 1.08 8.07 -51.93 -0.42 0.66 16 34 H 0.06 1.03 8.07 -51.93 -0.42 0.61 16 35 H 0.10 1.03 7.49 -51.93 -0.39 0.64 16 36 H 0.07 0.77 7.91 -51.93 -0.41 0.36 16 37 H 0.11 0.84 8.14 -51.93 -0.42 0.42 16 38 H 0.09 0.51 7.89 -51.93 -0.41 0.10 16 39 H 0.22 0.89 8.06 -52.49 -0.42 0.47 16 40 H 0.11 0.20 8.13 -51.93 -0.42 -0.22 16 41 H 0.10 0.29 7.87 -51.93 -0.41 -0.12 16 42 H 0.08 0.73 8.08 -51.93 -0.42 0.31 16 43 H 0.10 0.71 7.47 -51.93 -0.39 0.33 16 44 H 0.09 1.64 8.06 -52.49 -0.42 1.22 16 45 H 0.09 2.07 8.06 -52.48 -0.42 1.65 16 LS Contribution 375.04 15.07 5.65 5.65 Total: -1.00 -31.96 375.04 -10.57 -42.52 By element: Atomic # 1 Polarization: 10.21 SS G_CDS: -6.07 Total: 4.13 kcal Atomic # 6 Polarization: -15.04 SS G_CDS: -5.51 Total: -20.56 kcal Atomic # 7 Polarization: -31.15 SS G_CDS: 1.06 Total: -30.09 kcal Atomic # 8 Polarization: -13.74 SS G_CDS: -0.66 Total: -14.40 kcal Atomic # 14 Polarization: 17.77 SS G_CDS: -5.03 Total: 12.74 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -31.96 -10.57 -42.52 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000884889945.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.281 kcal (2) G-P(sol) polarization free energy of solvation -31.957 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.324 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.567 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.524 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.757 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds