Wall clock time and date at job start Sat Apr 11 2020 06:19:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30824 * 1 3 3 Si 1.86797 * 120.00160 * 2 1 4 4 H 1.48496 * 109.47014 * 179.97438 * 3 2 1 5 5 H 1.48492 * 109.47430 * 299.99913 * 3 2 1 6 6 H 1.48499 * 109.47012 * 60.00159 * 3 2 1 7 7 C 1.39946 * 119.99713 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00039 * 197.88173 * 7 2 1 9 9 C 1.41398 * 120.00310 * 17.86863 * 7 2 1 10 10 C 1.40706 * 120.24812 * 204.39095 * 9 7 2 11 11 C 1.37618 * 119.74753 * 179.97438 * 10 9 7 12 12 C 1.38637 * 120.24787 * 0.02562 * 11 10 9 13 13 C 1.50696 * 119.75097 * 179.97438 * 12 11 10 14 14 O 1.45202 * 109.47254 * 89.99647 * 13 12 11 15 15 C 1.34225 * 116.99615 * 179.97438 * 14 13 12 16 16 O 1.20827 * 120.00639 * 0.02562 * 15 14 13 17 17 C 1.50707 * 119.99641 * 180.02562 * 15 14 13 18 18 H 1.09001 * 107.87608 * 63.45114 * 17 15 14 19 19 C 1.50950 * 108.02876 * 306.93697 * 17 15 14 20 20 C 1.53669 * 110.96972 * 165.69566 * 19 17 15 21 21 C 1.51879 * 106.90180 * 79.10240 * 20 19 17 22 22 N 1.29897 * 127.82206 * 114.77297 * 21 20 19 23 23 N 1.29034 * 109.22241 * 180.35613 * 22 21 20 24 24 C 1.30963 * 109.70904 * 359.93192 * 23 22 21 25 25 N 1.34597 * 124.56065 * 294.94890 * 21 20 19 26 26 C 1.47497 * 125.04787 * 359.43352 * 25 21 20 27 27 C 1.50862 * 108.02743 * 180.02562 * 17 15 14 28 28 C 1.38640 * 120.49824 * 0.27350 * 12 11 10 29 29 C 1.37618 * 120.24631 * 359.44553 * 28 12 11 30 30 H 0.97007 * 119.99863 * 0.02562 * 1 2 3 31 31 H 1.07999 * 120.12494 * 0.02562 * 10 9 7 32 32 H 1.08004 * 119.87844 * 179.97438 * 11 10 9 33 33 H 1.09002 * 109.46824 * 329.99880 * 13 12 11 34 34 H 1.09000 * 109.47041 * 209.99957 * 13 12 11 35 35 H 1.09006 * 109.17920 * 286.07749 * 19 17 15 36 36 H 1.09001 * 109.18420 * 45.30741 * 19 17 15 37 37 H 1.09004 * 109.96936 * 198.45607 * 20 19 17 38 38 H 1.09000 * 109.96595 * 319.75716 * 20 19 17 39 39 H 1.08003 * 126.61041 * 179.88844 * 24 23 22 40 40 H 1.09002 * 109.93457 * 185.38860 * 26 25 21 41 41 H 1.09005 * 109.92925 * 306.51363 * 26 25 21 42 42 H 1.09001 * 109.14827 * 74.00361 * 27 17 15 43 43 H 1.08997 * 109.10686 * 314.80827 * 27 17 15 44 44 H 1.08004 * 119.87104 * 179.70946 * 28 12 11 45 45 H 1.08004 * 120.12592 * 180.27545 * 29 28 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 3.7022 1.3463 0.0006 5 1 1.8836 2.3964 -1.2124 6 1 1.8836 2.3964 1.2125 7 6 2.0079 -1.2120 -0.0005 8 1 3.0488 -1.2348 0.2866 9 6 1.3521 -2.4069 -0.3768 10 6 1.8255 -3.6500 0.0819 11 6 1.1790 -4.8064 -0.2903 12 6 0.0655 -4.7498 -1.1143 13 6 -0.6335 -6.0232 -1.5154 14 8 -1.6670 -6.3345 -0.5442 15 6 -2.3885 -7.4461 -0.7574 16 8 -2.1636 -8.1364 -1.7232 17 6 -3.4792 -7.8332 0.2080 18 1 -4.2394 -7.0523 0.1845 19 6 -2.8854 -7.8646 1.5955 20 6 -3.9884 -7.9002 2.6649 21 6 -4.4862 -9.3333 2.7382 22 7 -4.3886 -10.1603 3.7351 23 7 -4.9266 -11.2864 3.4071 24 6 -5.3893 -11.2151 2.1840 25 7 -5.1208 -9.9732 1.7386 26 6 -5.4423 -9.3841 0.4251 27 6 -4.1077 -9.1125 -0.2862 28 6 -0.4060 -3.5310 -1.5772 29 6 0.2214 -2.3615 -1.2131 30 1 -0.4850 0.8401 -0.0004 31 1 2.6925 -3.6963 0.7242 32 1 1.5408 -5.7617 0.0603 33 1 0.0891 -6.8385 -1.5510 34 1 -1.0857 -5.8951 -2.4988 35 1 -2.2594 -8.7511 1.6971 36 1 -2.2723 -6.9756 1.7429 37 1 -3.5813 -7.5977 3.6297 38 1 -4.8048 -7.2368 2.3798 39 1 -5.8896 -12.0011 1.6378 40 1 -6.0395 -10.0837 -0.1598 41 1 -5.9897 -8.4513 0.5603 42 1 -3.4261 -9.9419 -0.0973 43 1 -4.2844 -9.0321 -1.3587 44 1 -1.2715 -3.4990 -2.2225 45 1 -0.1503 -1.4128 -1.5713 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000884889949.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:29 Heat of formation + Delta-G solvation = 1.895757 kcal Electronic energy + Delta-G solvation = -28446.497254 eV Core-core repulsion = 24429.667116 eV Total energy + Delta-G solvation = -4016.830138 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -43.54028 -40.60864 -38.02376 -37.40718 -36.14259 -34.63405 -33.91984 -32.45258 -30.90718 -30.17477 -29.43403 -27.88718 -26.93463 -24.72950 -23.99256 -22.70359 -22.40577 -21.15160 -20.55417 -20.26146 -20.10683 -18.00898 -17.51034 -17.44475 -16.67363 -16.38074 -16.00531 -15.43520 -15.34989 -15.07638 -14.67691 -14.50303 -14.12934 -13.92975 -13.55997 -13.20401 -13.10331 -12.79299 -12.61216 -12.39392 -12.23351 -12.10751 -12.07775 -11.78713 -11.66005 -11.33529 -11.24964 -11.23477 -11.03903 -10.90675 -10.59298 -10.50664 -10.47368 -10.31141 -10.21494 -9.75702 -9.53510 -9.41432 -9.27997 -7.62954 -7.51645 -6.92543 -4.52076 1.61575 2.17962 2.23887 2.34123 2.68134 2.85707 2.94835 2.99578 3.04654 3.22308 3.81511 3.86382 4.01435 4.12877 4.23493 4.37044 4.42359 4.54151 4.62421 4.66927 4.87670 4.99524 5.07455 5.16615 5.35010 5.44945 5.53619 5.56258 5.57618 5.62670 5.72069 5.72738 5.82272 5.95260 6.00241 6.18101 6.24414 6.57523 6.72490 6.81668 6.92053 7.11911 7.20203 7.45516 7.67294 7.89342 7.90310 7.94298 8.13365 8.48240 8.51829 8.72999 8.80686 10.01137 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.019874 B = 0.002072 C = 0.001982 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1408.517079 B =13508.476740 C =14121.276181 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.784 5.784 2 C 0.075 3.925 3 Si 0.910 3.090 4 H -0.259 1.259 5 H -0.271 1.271 6 H -0.273 1.273 7 C -0.454 4.454 8 H 0.081 0.919 9 C 0.118 3.882 10 C -0.230 4.230 11 C -0.063 4.063 12 C -0.238 4.238 13 C 0.137 3.863 14 O -0.346 6.346 15 C 0.456 3.544 16 O -0.520 6.520 17 C -0.083 4.083 18 H 0.109 0.891 19 C -0.116 4.116 20 C -0.030 4.030 21 C 0.179 3.821 22 N -0.294 5.294 23 N -0.305 5.305 24 C 0.147 3.853 25 N -0.471 5.471 26 C 0.108 3.892 27 C -0.125 4.125 28 C -0.075 4.075 29 C -0.171 4.171 30 H 0.283 0.717 31 H 0.095 0.905 32 H 0.089 0.911 33 H 0.060 0.940 34 H 0.061 0.939 35 H 0.073 0.927 36 H 0.105 0.895 37 H 0.111 0.889 38 H 0.092 0.908 39 H 0.218 0.782 40 H 0.109 0.891 41 H 0.101 0.899 42 H 0.081 0.919 43 H 0.104 0.896 44 H 0.088 0.912 45 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.168 -12.449 -1.166 17.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.408 5.408 2 C -0.144 4.144 3 Si 0.734 3.266 4 H -0.183 1.183 5 H -0.196 1.196 6 H -0.198 1.198 7 C -0.483 4.483 8 H 0.099 0.901 9 C 0.116 3.884 10 C -0.249 4.249 11 C -0.081 4.081 12 C -0.239 4.239 13 C 0.065 3.935 14 O -0.262 6.262 15 C 0.300 3.700 16 O -0.410 6.410 17 C -0.102 4.102 18 H 0.127 0.873 19 C -0.155 4.155 20 C -0.069 4.069 21 C -0.090 4.090 22 N -0.134 5.134 23 N -0.144 5.144 24 C -0.141 4.141 25 N -0.162 5.162 26 C -0.015 4.015 27 C -0.163 4.163 28 C -0.094 4.094 29 C -0.190 4.190 30 H 0.094 0.906 31 H 0.113 0.887 32 H 0.107 0.893 33 H 0.079 0.921 34 H 0.080 0.920 35 H 0.092 0.908 36 H 0.124 0.876 37 H 0.129 0.871 38 H 0.111 0.889 39 H 0.234 0.766 40 H 0.127 0.873 41 H 0.119 0.881 42 H 0.100 0.900 43 H 0.122 0.878 44 H 0.106 0.894 45 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -11.927 -13.032 -0.099 17.666 hybrid contribution -0.069 1.098 -1.493 1.855 sum -11.996 -11.934 -1.593 16.996 Atomic orbital electron populations 1.69833 1.07693 1.29480 1.33826 1.25982 0.94774 1.01598 0.92091 0.86229 0.81053 0.80633 0.78707 1.18257 1.19566 1.19831 1.19724 0.98284 0.91224 1.39057 0.90086 1.17695 0.90775 0.92100 0.87868 1.20968 1.04140 0.92672 1.07153 1.20389 0.95077 0.96642 0.96019 1.18647 1.01352 0.91873 1.12076 1.21756 0.86425 0.96042 0.89294 1.86712 1.45921 1.40578 1.52975 1.23544 0.82174 0.79287 0.85041 1.90629 1.67555 1.52449 1.30363 1.20450 0.95952 0.99391 0.94434 0.87316 1.21384 0.98080 1.05492 0.90517 1.20574 0.98340 0.85980 1.02031 1.24969 0.99250 0.99026 0.85722 1.74261 1.18729 0.97411 1.23007 1.74533 1.13166 1.16071 1.10606 1.26333 1.04694 0.88241 0.94815 1.46363 1.43198 1.11837 1.14850 1.22488 0.98123 1.00608 0.80261 1.21606 0.95368 0.97482 1.01859 1.20525 0.97675 0.92468 0.98724 1.21293 0.99705 0.96664 1.01342 0.90648 0.88684 0.89327 0.92116 0.92044 0.90810 0.87640 0.87055 0.88921 0.76587 0.87254 0.88109 0.90045 0.87796 0.89389 0.86241 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -19.22 10.96 55.55 0.61 -18.61 16 2 C 0.07 1.78 5.14 -17.34 -0.09 1.69 16 3 Si 0.91 17.69 29.60 -169.99 -5.03 12.66 16 4 H -0.26 -5.00 7.11 56.52 0.40 -4.60 16 5 H -0.27 -5.18 7.11 56.52 0.40 -4.77 16 6 H -0.27 -5.23 7.11 56.52 0.40 -4.83 16 7 C -0.45 -11.47 9.05 -37.74 -0.34 -11.81 16 8 H 0.08 1.97 7.91 -52.49 -0.42 1.55 16 9 C 0.12 3.01 5.57 -106.83 -0.60 2.42 16 10 C -0.23 -5.40 9.80 -38.88 -0.38 -5.78 16 11 C -0.06 -1.35 9.67 -39.66 -0.38 -1.73 16 12 C -0.24 -4.99 5.54 -104.33 -0.58 -5.57 16 13 C 0.14 2.42 5.58 36.00 0.20 2.62 16 14 O -0.35 -5.67 9.46 -39.24 -0.37 -6.04 16 15 C 0.46 6.24 7.22 36.01 0.26 6.50 16 16 O -0.52 -8.24 15.28 -18.75 -0.29 -8.52 16 17 C -0.08 -0.75 2.04 -93.87 -0.19 -0.94 16 18 H 0.11 0.76 7.67 -51.93 -0.40 0.36 16 19 C -0.12 -1.08 4.89 -27.41 -0.13 -1.22 16 20 C -0.03 -0.24 6.02 -26.95 -0.16 -0.40 16 21 C 0.18 1.88 7.03 -155.75 -1.09 0.79 16 22 N -0.29 -4.11 12.23 32.84 0.40 -3.71 16 23 N -0.30 -4.04 12.24 29.60 0.36 -3.68 16 24 C 0.15 1.30 12.83 -90.35 -1.16 0.14 16 25 N -0.47 -3.84 2.72 -114.23 -0.31 -4.15 16 26 C 0.11 0.51 6.52 -3.16 -0.02 0.48 16 27 C -0.13 -0.90 4.49 -27.46 -0.12 -1.03 16 28 C -0.08 -1.67 9.67 -39.66 -0.38 -2.06 16 29 C -0.17 -4.22 8.70 -38.87 -0.34 -4.56 16 30 H 0.28 6.24 8.30 -40.82 -0.34 5.90 16 31 H 0.09 2.10 8.06 -52.49 -0.42 1.67 16 32 H 0.09 1.68 8.06 -52.48 -0.42 1.26 16 33 H 0.06 1.04 8.07 -51.93 -0.42 0.62 16 34 H 0.06 1.05 8.07 -51.93 -0.42 0.63 16 35 H 0.07 0.78 7.91 -51.93 -0.41 0.37 16 36 H 0.11 1.09 7.40 -51.93 -0.38 0.71 16 37 H 0.11 0.89 8.14 -51.93 -0.42 0.47 16 38 H 0.09 0.56 7.89 -51.93 -0.41 0.15 16 39 H 0.22 0.93 8.06 -52.48 -0.42 0.50 16 40 H 0.11 0.22 8.13 -51.93 -0.42 -0.20 16 41 H 0.10 0.33 7.88 -51.93 -0.41 -0.08 16 42 H 0.08 0.73 8.08 -51.93 -0.42 0.31 16 43 H 0.10 0.75 7.40 -51.93 -0.38 0.36 16 44 H 0.09 1.76 8.06 -52.48 -0.42 1.34 16 45 H 0.12 3.04 6.16 -52.48 -0.32 2.72 16 LS Contribution 374.81 15.07 5.65 5.65 Total: -1.00 -31.86 374.81 -10.56 -42.42 By element: Atomic # 1 Polarization: 10.51 SS G_CDS: -6.06 Total: 4.44 kcal Atomic # 6 Polarization: -14.94 SS G_CDS: -5.51 Total: -20.45 kcal Atomic # 7 Polarization: -31.22 SS G_CDS: 1.06 Total: -30.15 kcal Atomic # 8 Polarization: -13.90 SS G_CDS: -0.66 Total: -14.56 kcal Atomic # 14 Polarization: 17.69 SS G_CDS: -5.03 Total: 12.66 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -31.86 -10.56 -42.42 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000884889949.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.314 kcal (2) G-P(sol) polarization free energy of solvation -31.862 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.556 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.419 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.896 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds