Wall clock time and date at job start Sat Apr 11 2020 06:18:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86800 * 120.00510 * 2 1 4 4 H 1.48495 * 109.46804 * 264.98701 * 3 2 1 5 5 H 1.48499 * 109.46829 * 24.98253 * 3 2 1 6 6 H 1.48490 * 109.47270 * 144.98214 * 3 2 1 7 7 C 1.38809 * 119.99822 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00637 * 194.04362 * 7 2 1 9 9 N 1.36944 * 119.99889 * 14.05359 * 7 2 1 10 10 C 1.46904 * 120.68850 * 208.82345 * 9 7 2 11 11 C 1.52667 * 109.34156 * 235.30814 * 10 9 7 12 12 C 1.53186 * 109.42930 * 303.76656 * 11 10 9 13 13 C 1.52632 * 109.35419 * 58.93080 * 12 11 10 14 14 C 1.53459 * 113.68513 * 74.05550 * 13 12 11 15 15 N 1.47672 * 85.96469 * 91.17975 * 14 13 12 16 16 C 1.34773 * 134.45707 * 204.28558 * 15 14 13 17 17 O 1.21562 * 120.00460 * 179.97438 * 16 15 14 18 18 C 1.47788 * 119.99748 * 0.02562 * 16 15 14 19 19 N 1.32818 * 120.07441 * 359.71804 * 18 16 15 20 20 C 1.31671 * 122.01286 * 179.82337 * 19 18 16 21 21 C 1.38392 * 121.70379 * 0.43221 * 20 19 18 22 22 C 1.38867 * 119.13146 * 359.80520 * 21 20 19 23 23 O 1.34425 * 134.63596 * 179.97438 * 22 21 20 24 24 C 1.34452 * 110.85051 * 180.02562 * 23 22 21 25 25 C 1.34299 * 110.16835 * 359.97438 * 24 23 22 26 26 C 1.40201 * 120.07462 * 180.02562 * 18 16 15 27 27 C 1.47680 * 91.09244 * 24.28655 * 15 14 13 28 28 C 1.47111 * 120.69171 * 29.09072 * 9 7 2 29 29 H 0.97006 * 119.99739 * 0.02562 * 1 2 3 30 30 H 1.08995 * 109.53323 * 355.23092 * 10 9 7 31 31 H 1.08993 * 109.53903 * 115.46951 * 10 9 7 32 32 H 1.08998 * 109.56258 * 183.71730 * 11 10 9 33 33 H 1.09000 * 109.34734 * 63.68933 * 11 10 9 34 34 H 1.08998 * 109.48806 * 298.96639 * 12 11 10 35 35 H 1.08996 * 109.49116 * 178.89691 * 12 11 10 36 36 H 1.08994 * 113.79258 * 205.44268 * 14 13 12 37 37 H 1.09000 * 113.79110 * 336.92056 * 14 13 12 38 38 H 1.08003 * 119.14868 * 180.26154 * 20 19 18 39 39 H 1.07994 * 120.43710 * 179.83121 * 21 20 19 40 40 H 1.08000 * 124.91350 * 180.02562 * 24 23 22 41 41 H 1.08001 * 126.89398 * 180.02562 * 25 24 23 42 42 H 1.08997 * 113.78903 * 221.44625 * 27 15 14 43 43 H 1.08995 * 113.79129 * 89.97586 * 27 15 14 44 44 H 1.09002 * 109.64140 * 248.31287 * 28 9 7 45 45 H 1.09004 * 109.63639 * 8.92455 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.6038 1.9851 -1.3947 5 1 1.3988 2.6809 0.5913 6 1 3.4908 1.4730 0.8033 7 6 2.0102 -1.2021 0.0005 8 1 3.0660 -1.2162 0.2275 9 7 1.3562 -2.3705 -0.2869 10 6 1.8141 -3.6454 0.2812 11 6 2.0701 -4.6396 -0.8488 12 6 0.7993 -4.7926 -1.6905 13 6 0.4014 -3.4325 -2.2576 14 6 1.2991 -2.9578 -3.4081 15 7 0.3323 -3.6285 -4.3005 16 6 0.3973 -4.1482 -5.5423 17 8 -0.5886 -4.6545 -6.0417 18 6 1.6675 -4.1036 -6.2965 19 7 2.7444 -3.5467 -5.7541 20 6 3.8959 -3.4893 -6.3901 21 6 4.0474 -3.9998 -7.6674 22 6 2.9578 -4.5914 -8.2927 23 8 2.7548 -5.1702 -9.4889 24 6 1.4842 -5.5938 -9.6061 25 6 0.7966 -5.3107 -8.4877 26 6 1.7367 -4.6433 -7.5886 27 6 -0.7343 -3.5015 -3.2870 28 6 0.1839 -2.3757 -1.1757 29 1 -0.4850 0.8401 -0.0004 30 1 2.7365 -3.4853 0.8393 31 1 1.0485 -4.0439 0.9467 32 1 2.3465 -5.6066 -0.4286 33 1 2.8805 -4.2709 -1.4776 34 1 -0.0070 -5.1759 -1.0652 35 1 0.9868 -5.4873 -2.5092 36 1 1.3276 -1.8746 -3.5254 37 1 2.2891 -3.4139 -3.4103 38 1 4.7433 -3.0294 -5.9033 39 1 5.0007 -3.9392 -8.1712 40 1 1.0758 -6.0907 -10.4737 41 1 -0.2424 -5.5311 -8.2920 42 1 -1.3596 -4.3893 -3.1932 43 1 -1.3106 -2.5799 -3.3684 44 1 -0.7103 -2.6180 -0.6014 45 1 0.0709 -1.3953 -1.6387 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000981908430.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:35 Heat of formation + Delta-G solvation = 74.569125 kcal Electronic energy + Delta-G solvation = -30027.016975 eV Core-core repulsion = 26013.338191 eV Total energy + Delta-G solvation = -4013.678785 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.90353 -40.47429 -39.21147 -37.87100 -35.73380 -33.11381 -32.85479 -32.15307 -30.48029 -30.01391 -29.65204 -26.30110 -25.79008 -25.33782 -24.48606 -23.21523 -22.25773 -22.12249 -20.65434 -19.48776 -18.14301 -17.78405 -17.58885 -16.75576 -16.65377 -16.56481 -15.77470 -15.51464 -15.49145 -14.65193 -14.45014 -14.07042 -13.96405 -13.81565 -13.60178 -13.30556 -13.10717 -13.07974 -12.85843 -12.54395 -12.33542 -12.00372 -11.74433 -11.59468 -11.17743 -10.94946 -10.76927 -10.55461 -10.44505 -10.29391 -10.22475 -10.15404 -9.91551 -9.68392 -9.65983 -9.40840 -9.33105 -8.65228 -8.48950 -8.27404 -6.65000 -5.79612 -3.23125 0.16232 0.96840 2.04847 2.34896 2.76089 3.00265 3.37741 3.44913 3.45336 3.76716 3.97900 4.13980 4.29951 4.47991 4.62160 4.77389 4.84987 4.98158 5.09234 5.29071 5.41535 5.42628 5.46308 5.49862 5.59979 5.61100 5.78121 5.81826 5.94564 5.96508 6.01985 6.09630 6.16214 6.20710 6.25503 6.38229 6.44354 6.57743 6.68183 6.68834 6.78836 6.89386 7.02232 7.27691 7.57222 7.58704 7.79284 7.96085 8.31634 8.44148 9.20699 9.83296 10.41228 11.29223 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.014974 B = 0.003212 C = 0.003001 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1869.510953 B = 8715.724054 C = 9328.925674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.004 3.996 3 Si 0.901 3.099 4 H -0.287 1.287 5 H -0.292 1.292 6 H -0.280 1.280 7 C -0.249 4.249 8 H 0.065 0.935 9 N -0.590 5.590 10 C 0.145 3.855 11 C -0.133 4.133 12 C -0.082 4.082 13 C -0.118 4.118 14 C 0.140 3.860 15 N -0.616 5.616 16 C 0.583 3.417 17 O -0.545 6.545 18 C 0.149 3.851 19 N -0.451 5.451 20 C 0.112 3.888 21 C -0.141 4.141 22 C 0.079 3.921 23 O -0.190 6.190 24 C -0.002 4.002 25 C -0.173 4.173 26 C -0.138 4.138 27 C 0.116 3.884 28 C 0.193 3.807 29 H 0.254 0.746 30 H 0.053 0.947 31 H 0.017 0.983 32 H 0.050 0.950 33 H 0.059 0.941 34 H 0.059 0.941 35 H 0.046 0.954 36 H 0.087 0.913 37 H 0.088 0.912 38 H 0.176 0.824 39 H 0.148 0.852 40 H 0.215 0.785 41 H 0.173 0.827 42 H 0.076 0.924 43 H 0.089 0.911 44 H 0.025 0.975 45 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.083 -10.493 -15.517 19.409 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.195 4.195 3 Si 0.731 3.269 4 H -0.214 1.214 5 H -0.218 1.218 6 H -0.205 1.205 7 C -0.378 4.378 8 H 0.083 0.917 9 N -0.312 5.312 10 C 0.019 3.981 11 C -0.172 4.172 12 C -0.119 4.119 13 C -0.120 4.120 14 C 0.018 3.982 15 N -0.349 5.349 16 C 0.370 3.630 17 O -0.424 6.424 18 C 0.005 3.995 19 N -0.164 5.164 20 C -0.042 4.042 21 C -0.161 4.161 22 C 0.024 3.976 23 O -0.090 6.090 24 C -0.066 4.066 25 C -0.193 4.193 26 C -0.142 4.142 27 C -0.006 4.006 28 C 0.066 3.934 29 H 0.064 0.936 30 H 0.071 0.929 31 H 0.035 0.965 32 H 0.069 0.931 33 H 0.077 0.923 34 H 0.078 0.922 35 H 0.065 0.935 36 H 0.105 0.895 37 H 0.106 0.894 38 H 0.193 0.807 39 H 0.165 0.835 40 H 0.231 0.769 41 H 0.190 0.810 42 H 0.095 0.905 43 H 0.107 0.893 44 H 0.043 0.957 45 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 4.636 -10.347 -15.294 19.038 hybrid contribution 0.392 0.576 -0.978 1.200 sum 5.028 -9.771 -16.272 19.634 Atomic orbital electron populations 1.69985 1.05170 1.25509 1.54268 1.25060 0.95322 0.98274 1.00809 0.86325 0.79041 0.83697 0.77801 1.21392 1.21808 1.20529 1.19159 0.91666 0.84225 1.42784 0.91692 1.43987 1.33239 1.02217 1.51735 1.20787 0.97509 0.86976 0.92819 1.21935 0.97242 0.98988 0.99071 1.21076 0.98085 0.94474 0.98290 1.22906 0.94375 0.98757 0.96009 1.23254 0.94306 0.97661 0.82946 1.50104 1.16463 1.55485 1.12804 1.17327 0.86251 0.79532 0.79843 1.90730 1.36266 1.47272 1.68118 1.20779 0.93440 0.95086 0.90202 1.67899 0.98778 1.14101 1.35606 1.22715 0.95430 0.95790 0.90302 1.21207 0.97524 1.01147 0.96266 1.19705 0.95696 0.97349 0.84857 1.83962 1.30384 1.62437 1.32195 1.24240 0.80706 1.00903 1.00747 1.22716 1.01499 1.02730 0.92350 1.20645 0.94663 1.02990 0.95929 1.23332 0.92231 1.01822 0.83200 1.20667 0.88967 0.95613 0.88139 0.93600 0.92892 0.96505 0.93117 0.92270 0.92217 0.93496 0.89506 0.89362 0.80700 0.83461 0.76883 0.81005 0.90521 0.89270 0.95718 0.89174 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.07 11.14 55.49 0.62 -24.46 16 2 C 0.00 0.10 4.98 -17.43 -0.09 0.02 16 3 Si 0.90 20.99 29.58 -169.99 -5.03 15.96 16 4 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 5 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 6 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 7 C -0.25 -6.45 9.59 -15.06 -0.14 -6.59 16 8 H 0.07 1.67 7.87 -52.49 -0.41 1.25 16 9 N -0.59 -13.81 3.01 -172.75 -0.52 -14.33 16 10 C 0.15 2.90 6.43 -3.99 -0.03 2.87 16 11 C -0.13 -2.22 5.99 -26.81 -0.16 -2.38 16 12 C -0.08 -1.35 5.02 -26.82 -0.13 -1.49 16 13 C -0.12 -2.10 0.87 -154.43 -0.13 -2.24 16 14 C 0.14 2.46 6.58 -3.17 -0.02 2.44 16 15 N -0.62 -10.71 3.45 -181.63 -0.63 -11.33 16 16 C 0.58 10.42 8.03 -12.36 -0.10 10.32 16 17 O -0.55 -10.57 15.93 5.31 0.08 -10.49 16 18 C 0.15 2.37 6.78 -82.80 -0.56 1.81 16 19 N -0.45 -6.61 7.93 -9.68 -0.08 -6.69 16 20 C 0.11 1.23 11.13 -17.56 -0.20 1.04 16 21 C -0.14 -1.41 10.13 -39.29 -0.40 -1.81 16 22 C 0.08 0.96 7.48 -38.28 -0.29 0.67 16 23 O -0.19 -2.07 10.57 4.97 0.05 -2.02 16 24 C 0.00 -0.02 11.97 29.34 0.35 0.33 16 25 C -0.17 -2.09 10.31 -37.78 -0.39 -2.48 16 26 C -0.14 -1.98 6.16 -104.90 -0.65 -2.62 16 27 C 0.12 1.95 7.97 -3.18 -0.03 1.92 16 28 C 0.19 4.23 4.40 -3.81 -0.02 4.21 16 29 H 0.25 6.88 8.31 -40.82 -0.34 6.54 16 30 H 0.05 1.04 7.93 -51.93 -0.41 0.63 16 31 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.06 1.02 7.37 -51.93 -0.38 0.64 16 34 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 35 H 0.05 0.76 8.02 -51.93 -0.42 0.34 16 36 H 0.09 1.64 7.97 -51.93 -0.41 1.23 16 37 H 0.09 1.54 6.44 -51.93 -0.33 1.21 16 38 H 0.18 1.36 8.06 -52.48 -0.42 0.94 16 39 H 0.15 0.98 8.06 -52.49 -0.42 0.56 16 40 H 0.21 0.89 8.06 -52.49 -0.42 0.47 16 41 H 0.17 2.08 7.29 -52.49 -0.38 1.70 16 42 H 0.08 1.21 8.09 -51.93 -0.42 0.79 16 43 H 0.09 1.47 8.09 -51.93 -0.42 1.05 16 44 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 45 H 0.09 2.22 6.02 -51.93 -0.31 1.91 16 LS Contribution 366.90 15.07 5.53 5.53 Total: -1.00 -31.47 366.90 -8.94 -40.41 By element: Atomic # 1 Polarization: 7.39 SS G_CDS: -6.00 Total: 1.38 kcal Atomic # 6 Polarization: 8.99 SS G_CDS: -2.98 Total: 6.02 kcal Atomic # 7 Polarization: -56.20 SS G_CDS: -0.60 Total: -56.80 kcal Atomic # 8 Polarization: -12.64 SS G_CDS: 0.14 Total: -12.50 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.03 Total: 15.96 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -31.47 -8.94 -40.41 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981908430.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.983 kcal (2) G-P(sol) polarization free energy of solvation -31.470 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.414 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.569 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds