Wall clock time and date at job start Sat Apr 11 2020 06:18:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86800 * 120.00510 * 2 1 4 4 H 1.48495 * 109.46804 * 264.98701 * 3 2 1 5 5 H 1.48499 * 109.46829 * 24.98253 * 3 2 1 6 6 H 1.48490 * 109.47270 * 144.98214 * 3 2 1 7 7 C 1.38809 * 119.99822 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00637 * 194.04362 * 7 2 1 9 9 N 1.36944 * 119.99889 * 14.05359 * 7 2 1 10 10 C 1.46904 * 120.68850 * 208.82345 * 9 7 2 11 11 C 1.52667 * 109.34156 * 235.30814 * 10 9 7 12 12 C 1.53186 * 109.42930 * 303.76656 * 11 10 9 13 13 C 1.52632 * 109.35419 * 58.93080 * 12 11 10 14 14 C 1.53459 * 113.68513 * 74.05550 * 13 12 11 15 15 N 1.47672 * 85.96469 * 91.17975 * 14 13 12 16 16 C 1.34773 * 134.45707 * 204.28558 * 15 14 13 17 17 O 1.21562 * 120.00460 * 179.97438 * 16 15 14 18 18 C 1.47788 * 119.99748 * 0.02562 * 16 15 14 19 19 N 1.32818 * 120.07441 * 359.71804 * 18 16 15 20 20 C 1.31671 * 122.01286 * 179.82337 * 19 18 16 21 21 C 1.38392 * 121.70379 * 0.43221 * 20 19 18 22 22 C 1.38867 * 119.13146 * 359.80520 * 21 20 19 23 23 O 1.34425 * 134.63596 * 179.97438 * 22 21 20 24 24 C 1.34452 * 110.85051 * 180.02562 * 23 22 21 25 25 C 1.34299 * 110.16835 * 359.97438 * 24 23 22 26 26 C 1.40201 * 120.07462 * 180.02562 * 18 16 15 27 27 C 1.47680 * 91.09244 * 24.28655 * 15 14 13 28 28 C 1.47111 * 120.69171 * 29.09072 * 9 7 2 29 29 H 0.97006 * 119.99739 * 0.02562 * 1 2 3 30 30 H 1.08995 * 109.53323 * 355.23092 * 10 9 7 31 31 H 1.08993 * 109.53903 * 115.46951 * 10 9 7 32 32 H 1.08998 * 109.56258 * 183.71730 * 11 10 9 33 33 H 1.09000 * 109.34734 * 63.68933 * 11 10 9 34 34 H 1.08998 * 109.48806 * 298.96639 * 12 11 10 35 35 H 1.08996 * 109.49116 * 178.89691 * 12 11 10 36 36 H 1.08994 * 113.79258 * 205.44268 * 14 13 12 37 37 H 1.09000 * 113.79110 * 336.92056 * 14 13 12 38 38 H 1.08003 * 119.14868 * 180.26154 * 20 19 18 39 39 H 1.07994 * 120.43710 * 179.83121 * 21 20 19 40 40 H 1.08000 * 124.91350 * 180.02562 * 24 23 22 41 41 H 1.08001 * 126.89398 * 180.02562 * 25 24 23 42 42 H 1.08997 * 113.78903 * 221.44625 * 27 15 14 43 43 H 1.08995 * 113.79129 * 89.97586 * 27 15 14 44 44 H 1.09002 * 109.64140 * 248.31287 * 28 9 7 45 45 H 1.09004 * 109.63639 * 8.92455 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.6038 1.9851 -1.3947 5 1 1.3988 2.6809 0.5913 6 1 3.4908 1.4730 0.8033 7 6 2.0102 -1.2021 0.0005 8 1 3.0660 -1.2162 0.2275 9 7 1.3562 -2.3705 -0.2869 10 6 1.8141 -3.6454 0.2812 11 6 2.0701 -4.6396 -0.8488 12 6 0.7993 -4.7926 -1.6905 13 6 0.4014 -3.4325 -2.2576 14 6 1.2991 -2.9578 -3.4081 15 7 0.3323 -3.6285 -4.3005 16 6 0.3973 -4.1482 -5.5423 17 8 -0.5886 -4.6545 -6.0417 18 6 1.6675 -4.1036 -6.2965 19 7 2.7444 -3.5467 -5.7541 20 6 3.8959 -3.4893 -6.3901 21 6 4.0474 -3.9998 -7.6674 22 6 2.9578 -4.5914 -8.2927 23 8 2.7548 -5.1702 -9.4889 24 6 1.4842 -5.5938 -9.6061 25 6 0.7966 -5.3107 -8.4877 26 6 1.7367 -4.6433 -7.5886 27 6 -0.7343 -3.5015 -3.2870 28 6 0.1839 -2.3757 -1.1757 29 1 -0.4850 0.8401 -0.0004 30 1 2.7365 -3.4853 0.8393 31 1 1.0485 -4.0439 0.9467 32 1 2.3465 -5.6066 -0.4286 33 1 2.8805 -4.2709 -1.4776 34 1 -0.0070 -5.1759 -1.0652 35 1 0.9868 -5.4873 -2.5092 36 1 1.3276 -1.8746 -3.5254 37 1 2.2891 -3.4139 -3.4103 38 1 4.7433 -3.0294 -5.9033 39 1 5.0007 -3.9392 -8.1712 40 1 1.0758 -6.0907 -10.4737 41 1 -0.2424 -5.5311 -8.2920 42 1 -1.3596 -4.3893 -3.1932 43 1 -1.3106 -2.5799 -3.3684 44 1 -0.7103 -2.6180 -0.6014 45 1 0.0709 -1.3953 -1.6387 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000981908430.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:34 Heat of formation + Delta-G solvation = 55.917509 kcal Electronic energy + Delta-G solvation = -30027.825770 eV Core-core repulsion = 26013.338191 eV Total energy + Delta-G solvation = -4014.487579 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -43.76245 -41.85696 -40.29825 -39.18970 -37.36729 -34.61412 -33.99945 -33.15526 -31.92420 -31.61296 -30.75308 -27.69058 -27.25481 -27.14271 -25.55964 -24.08975 -23.94594 -23.13913 -22.12506 -20.74492 -19.30325 -19.00846 -18.70583 -18.56233 -17.77980 -17.45451 -17.06980 -16.97621 -16.46834 -16.29133 -15.68706 -15.40175 -15.38356 -15.19913 -14.97349 -14.48333 -14.42852 -14.27460 -14.04324 -13.92579 -13.90424 -13.34798 -13.14669 -12.96465 -12.80550 -12.66986 -12.53616 -12.20507 -11.95229 -11.77022 -11.57348 -11.45354 -11.39298 -11.24156 -10.97252 -10.64122 -10.58149 -10.45380 -9.81525 -9.39685 -8.57341 -7.80258 -5.25752 -0.79399 0.06009 1.20630 1.51413 1.53136 1.55217 1.57668 1.60299 1.72253 2.56406 2.71027 2.90539 3.21965 3.30443 3.44160 3.47445 3.74925 3.86098 3.90400 3.99010 4.08077 4.09219 4.27903 4.35774 4.40665 4.46396 4.53001 4.58297 4.68927 4.70876 4.73359 4.77450 4.82265 4.94156 5.05951 5.07095 5.18476 5.18819 5.30053 5.30739 5.33211 5.46905 5.60523 5.71338 5.78186 5.84203 6.46534 6.57771 6.59204 7.00464 7.22561 7.92949 8.45994 9.26196 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.014974 B = 0.003212 C = 0.003001 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1869.510953 B = 8715.724054 C = 9328.925674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.046 4.046 3 Si 0.960 3.040 4 H -0.285 1.285 5 H -0.300 1.300 6 H -0.270 1.270 7 C -0.252 4.252 8 H 0.067 0.933 9 N -0.606 5.606 10 C 0.141 3.859 11 C -0.121 4.121 12 C -0.076 4.076 13 C -0.109 4.109 14 C 0.154 3.846 15 N -0.618 5.618 16 C 0.579 3.421 17 O -0.570 6.570 18 C 0.107 3.893 19 N -0.470 5.470 20 C 0.100 3.900 21 C -0.112 4.112 22 C 0.063 3.937 23 O -0.187 6.187 24 C 0.041 3.959 25 C -0.219 4.219 26 C -0.154 4.154 27 C 0.117 3.883 28 C 0.206 3.794 29 H 0.248 0.752 30 H 0.054 0.946 31 H 0.014 0.986 32 H 0.081 0.919 33 H 0.056 0.944 34 H 0.065 0.935 35 H 0.056 0.944 36 H 0.067 0.933 37 H 0.093 0.907 38 H 0.209 0.791 39 H 0.190 0.810 40 H 0.266 0.734 41 H 0.162 0.838 42 H 0.088 0.912 43 H 0.085 0.915 44 H 0.001 0.999 45 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.655 -11.888 -17.544 22.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.242 4.242 3 Si 0.789 3.211 4 H -0.212 1.212 5 H -0.227 1.227 6 H -0.194 1.194 7 C -0.382 4.382 8 H 0.085 0.915 9 N -0.329 5.329 10 C 0.016 3.984 11 C -0.159 4.159 12 C -0.113 4.113 13 C -0.112 4.112 14 C 0.032 3.968 15 N -0.350 5.350 16 C 0.368 3.632 17 O -0.450 6.450 18 C -0.034 4.034 19 N -0.183 5.183 20 C -0.054 4.054 21 C -0.132 4.132 22 C 0.008 3.992 23 O -0.087 6.087 24 C -0.023 4.023 25 C -0.239 4.239 26 C -0.158 4.158 27 C -0.006 4.006 28 C 0.080 3.920 29 H 0.057 0.943 30 H 0.073 0.927 31 H 0.032 0.968 32 H 0.100 0.900 33 H 0.075 0.925 34 H 0.084 0.916 35 H 0.075 0.925 36 H 0.085 0.915 37 H 0.112 0.888 38 H 0.225 0.775 39 H 0.207 0.793 40 H 0.282 0.718 41 H 0.179 0.821 42 H 0.106 0.894 43 H 0.103 0.897 44 H 0.019 0.981 45 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 7.225 -11.768 -17.315 22.147 hybrid contribution -0.350 0.954 -0.435 1.105 sum 6.876 -10.814 -17.749 21.892 Atomic orbital electron populations 1.70139 1.06451 1.25581 1.55959 1.25718 0.95973 1.01057 1.01433 0.85393 0.78039 0.80029 0.77663 1.21236 1.22666 1.19438 1.19450 0.91930 0.85299 1.41522 0.91504 1.44238 1.33280 1.02917 1.52455 1.20937 0.97269 0.86179 0.94009 1.21803 0.97028 0.99387 0.97727 1.21046 0.98319 0.93384 0.98586 1.22714 0.95188 0.98445 0.94815 1.22998 0.94500 0.96523 0.82792 1.50057 1.16230 1.55622 1.13053 1.17764 0.87087 0.78691 0.79649 1.90692 1.37461 1.48320 1.68569 1.20435 0.93146 0.98639 0.91226 1.67781 0.99588 1.14152 1.36775 1.23321 0.95072 0.96033 0.91021 1.21682 0.98371 0.97757 0.95393 1.20007 0.95621 0.98317 0.85237 1.84004 1.31091 1.62156 1.31436 1.25122 0.79281 0.97329 1.00610 1.22767 1.01589 1.05694 0.93840 1.20955 0.96427 1.02719 0.95739 1.23305 0.92155 1.02224 0.82888 1.20336 0.87853 0.95280 0.88525 0.94298 0.92722 0.96760 0.90001 0.92523 0.91604 0.92506 0.91471 0.88843 0.77468 0.79301 0.71846 0.82058 0.89366 0.89691 0.98081 0.92347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.66 11.14 21.65 0.24 -53.42 16 2 C -0.05 -2.51 4.98 84.86 0.42 -2.08 16 3 Si 0.96 43.81 29.58 68.60 2.03 45.84 16 4 H -0.29 -12.85 7.11 99.48 0.71 -12.14 16 5 H -0.30 -13.98 7.11 99.48 0.71 -13.27 16 6 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 7 C -0.25 -13.19 9.59 84.03 0.81 -12.39 16 8 H 0.07 3.42 7.87 -2.91 -0.02 3.40 16 9 N -0.61 -28.80 3.01 -700.45 -2.11 -30.90 16 10 C 0.14 5.53 6.43 86.19 0.55 6.09 16 11 C -0.12 -3.81 5.99 30.55 0.18 -3.62 16 12 C -0.08 -2.42 5.02 30.53 0.15 -2.27 16 13 C -0.11 -3.96 0.87 -52.04 -0.05 -4.01 16 14 C 0.15 5.52 6.58 86.30 0.57 6.09 16 15 N -0.62 -22.04 3.45 -846.82 -2.92 -24.96 16 16 C 0.58 21.34 8.03 86.77 0.70 22.04 16 17 O -0.57 -22.96 15.93 -3.91 -0.06 -23.02 16 18 C 0.11 3.46 6.78 42.00 0.28 3.75 16 19 N -0.47 -13.51 7.93 -184.54 -1.46 -14.97 16 20 C 0.10 1.98 11.13 84.75 0.94 2.92 16 21 C -0.11 -1.87 10.13 22.46 0.23 -1.64 16 22 C 0.06 1.39 7.48 23.11 0.17 1.56 16 23 O -0.19 -3.47 10.57 -5.12 -0.05 -3.52 16 24 C 0.04 0.61 11.97 66.92 0.80 1.41 16 25 C -0.22 -5.17 10.31 23.44 0.24 -4.93 16 26 C -0.15 -4.34 6.16 -20.04 -0.12 -4.47 16 27 C 0.12 4.03 7.97 86.29 0.69 4.72 16 28 C 0.21 9.41 4.40 86.20 0.38 9.79 16 29 H 0.25 13.95 8.31 -92.70 -0.77 13.18 16 30 H 0.05 2.09 7.93 -2.39 -0.02 2.07 16 31 H 0.01 0.57 8.14 -2.39 -0.02 0.55 16 32 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 33 H 0.06 1.84 7.37 -2.39 -0.02 1.82 16 34 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 35 H 0.06 1.75 8.02 -2.39 -0.02 1.73 16 36 H 0.07 2.66 7.97 -2.39 -0.02 2.64 16 37 H 0.09 3.25 6.44 -2.39 -0.02 3.24 16 38 H 0.21 2.54 8.06 -2.91 -0.02 2.51 16 39 H 0.19 1.52 8.06 -2.91 -0.02 1.50 16 40 H 0.27 0.92 8.06 -2.91 -0.02 0.90 16 41 H 0.16 4.06 7.29 -2.91 -0.02 4.04 16 42 H 0.09 2.83 8.09 -2.39 -0.02 2.81 16 43 H 0.08 2.97 8.09 -2.39 -0.02 2.95 16 44 H 0.00 0.06 8.14 -2.39 -0.02 0.04 16 45 H 0.06 3.03 6.02 -2.39 -0.01 3.02 16 Total: -1.00 -71.55 366.90 3.63 -67.92 By element: Atomic # 1 Polarization: 13.08 SS G_CDS: 1.01 Total: 14.10 kcal Atomic # 6 Polarization: 15.99 SS G_CDS: 6.95 Total: 22.95 kcal Atomic # 7 Polarization: -118.01 SS G_CDS: -6.25 Total: -124.26 kcal Atomic # 8 Polarization: -26.42 SS G_CDS: -0.12 Total: -26.54 kcal Atomic # 14 Polarization: 43.81 SS G_CDS: 2.03 Total: 45.84 kcal Total: -71.55 3.63 -67.92 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981908430.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.834 kcal (2) G-P(sol) polarization free energy of solvation -71.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.287 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.916 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds