Wall clock time and date at job start Sat Apr 11 2020 06:17:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86800 * 119.99997 * 2 1 4 4 H 1.48497 * 109.47055 * 269.99806 * 3 2 1 5 5 H 1.48500 * 109.47084 * 29.99692 * 3 2 1 6 6 H 1.48498 * 109.47480 * 149.99759 * 3 2 1 7 7 C 1.38815 * 120.00167 * 179.97438 * 2 1 3 8 8 H 1.07991 * 119.99919 * 163.07926 * 7 2 1 9 9 N 1.36937 * 119.99640 * 343.08979 * 7 2 1 10 10 C 1.46931 * 120.62888 * 151.80795 * 9 7 2 11 11 C 1.53191 * 108.77386 * 126.40880 * 10 9 7 12 12 C 1.53041 * 109.31491 * 54.63407 * 11 10 9 13 13 C 1.53046 * 109.53773 * 298.63417 * 12 11 10 14 14 H 1.09004 * 109.52061 * 301.39516 * 13 12 11 15 15 N 1.46503 * 109.49363 * 181.31577 * 13 12 11 16 16 C 1.34777 * 119.99726 * 154.88622 * 15 13 12 17 17 O 1.21703 * 119.99570 * 0.27611 * 16 15 13 18 18 C 1.46658 * 120.00263 * 180.27263 * 16 15 13 19 19 C 1.36728 * 125.86183 * 179.72017 * 18 16 15 20 20 C 1.39909 * 106.91360 * 179.84821 * 19 18 16 21 21 C 1.36516 * 107.02472 * 0.41164 * 20 19 18 22 22 C 1.47735 * 125.76994 * 179.72554 * 21 20 19 23 23 C 1.40032 * 120.93213 * 359.71519 * 22 21 20 24 24 C 1.37949 * 118.98813 * 179.75866 * 23 22 21 25 25 N 1.31928 * 120.90585 * 0.52745 * 24 23 22 26 26 C 1.31929 * 122.07758 * 359.74092 * 25 24 23 27 27 C 1.37949 * 120.90687 * 359.97438 * 26 25 24 28 28 O 1.34392 * 108.46412 * 359.73947 * 21 20 19 29 29 C 1.46928 * 120.63134 * 331.82354 * 9 7 2 30 30 H 0.97003 * 120.00062 * 0.02562 * 1 2 3 31 31 H 1.08999 * 109.58456 * 246.19072 * 10 9 7 32 32 H 1.09000 * 109.58479 * 6.48098 * 10 9 7 33 33 H 1.09000 * 109.49810 * 174.58393 * 11 10 9 34 34 H 1.09007 * 109.49990 * 294.68177 * 11 10 9 35 35 H 1.08999 * 109.46207 * 178.61416 * 12 11 10 36 36 H 1.09001 * 109.45901 * 58.65786 * 12 11 10 37 37 H 0.97000 * 120.00300 * 335.15968 * 15 13 12 38 38 H 1.07992 * 126.53869 * 359.97438 * 19 18 16 39 39 H 1.08004 * 126.48938 * 180.12773 * 20 19 18 40 40 H 1.08004 * 120.50887 * 0.02562 * 23 22 21 41 41 H 1.08003 * 119.54746 * 180.27233 * 24 23 22 42 42 H 1.07995 * 119.55215 * 179.97438 * 26 25 24 43 43 H 1.07996 * 120.50557 * 180.02562 * 27 26 25 44 44 H 1.08998 * 109.58628 * 113.80387 * 29 9 7 45 45 H 1.09000 * 109.58896 * 353.38113 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4475 2.6527 0.7000 6 1 3.5477 1.4403 0.7001 7 6 2.0103 -1.2022 0.0005 8 1 3.0551 -1.2225 -0.2717 9 7 1.3699 -2.3622 0.3460 10 6 1.8136 -3.6529 -0.1984 11 6 2.0672 -4.6174 0.9644 12 6 0.8118 -4.7009 1.8358 13 6 0.4974 -3.3193 2.4142 14 1 1.3469 -2.9676 2.9997 15 7 -0.6861 -3.4067 3.2732 16 6 -0.8686 -2.5095 4.2623 17 8 -0.0526 -1.6239 4.4386 18 6 -2.0502 -2.6005 5.1261 19 6 -2.3506 -1.7620 6.1635 20 6 -3.5601 -2.2061 6.7088 21 6 -3.9443 -3.3012 5.9901 22 6 -5.1650 -4.1008 6.2209 23 6 -6.0549 -3.7747 7.2517 24 6 -7.1850 -4.5458 7.4281 25 7 -7.4263 -5.5827 6.6489 26 6 -6.6121 -5.9281 5.6701 27 6 -5.4616 -5.2096 5.4186 28 8 -3.0245 -3.5292 5.0372 29 6 0.2260 -2.3400 1.2678 30 1 -0.4850 0.8401 -0.0004 31 1 1.0399 -4.0604 -0.8490 32 1 2.7330 -3.5130 -0.7669 33 1 2.3039 -5.6063 0.5718 34 1 2.9022 -4.2538 1.5634 35 1 0.9811 -5.4055 2.6501 36 1 -0.0284 -5.0411 1.2305 37 1 -1.3364 -4.1125 3.1327 38 1 -1.7667 -0.9168 6.4968 39 1 -4.0873 -1.7684 7.5436 40 1 -5.8616 -2.9298 7.8961 41 1 -7.8798 -4.2998 8.2176 42 1 -6.8493 -6.7850 5.0572 43 1 -4.7998 -5.4978 4.6153 44 1 -0.6772 -2.6404 0.7367 45 1 0.0992 -1.3343 1.6687 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001007490832.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:37 Heat of formation + Delta-G solvation = 15.602851 kcal Electronic energy + Delta-G solvation = -28736.967636 eV Core-core repulsion = 24720.731882 eV Total energy + Delta-G solvation = -4016.235754 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -43.87118 -41.04142 -40.77829 -38.96996 -35.98574 -34.90821 -34.44304 -34.01200 -32.22355 -31.99429 -31.19699 -29.70701 -27.27120 -25.88212 -24.72758 -24.05403 -23.82029 -22.60676 -22.46439 -21.45881 -21.01870 -19.60014 -18.77790 -18.34394 -17.61031 -17.34610 -17.08211 -16.81376 -16.69519 -15.97464 -15.87863 -15.61468 -15.29452 -15.21089 -14.88752 -14.74464 -14.68576 -14.35299 -14.16800 -14.10635 -14.04854 -13.80467 -13.48768 -12.97089 -12.63882 -12.60138 -12.57731 -12.32943 -12.10224 -11.80474 -11.69347 -11.68128 -11.33479 -11.29118 -11.11301 -10.58221 -10.57289 -10.29392 -10.18798 -9.37179 -8.71427 -7.91460 -5.37612 -0.71189 0.13533 0.36262 1.27430 1.40151 1.41842 1.44489 1.52759 1.97562 2.08728 2.47947 2.84222 3.14948 3.25469 3.54776 3.58820 3.73061 3.76118 3.88892 3.94133 4.00522 4.09738 4.11236 4.22478 4.40811 4.43052 4.45167 4.56397 4.58358 4.72665 4.78790 4.83839 4.87947 4.93685 5.04322 5.07175 5.14935 5.17490 5.25499 5.26323 5.32173 5.49687 5.59206 5.63720 5.66415 5.72036 6.32649 6.41734 6.95106 6.98615 7.10352 7.82157 8.31728 9.13618 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.015268 B = 0.002532 C = 0.002342 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1833.429139 B =11055.322746 C =11954.347529 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.052 4.052 3 Si 0.963 3.037 4 H -0.277 1.277 5 H -0.297 1.297 6 H -0.271 1.271 7 C -0.264 4.264 8 H 0.070 0.930 9 N -0.609 5.609 10 C 0.134 3.866 11 C -0.121 4.121 12 C -0.108 4.108 13 C 0.130 3.870 14 H 0.060 0.940 15 N -0.696 5.696 16 C 0.593 3.407 17 O -0.558 6.558 18 C -0.078 4.078 19 C -0.123 4.123 20 C -0.176 4.176 21 C 0.041 3.959 22 C 0.008 3.992 23 C -0.143 4.143 24 C 0.101 3.899 25 N -0.506 5.506 26 C 0.099 3.901 27 C -0.163 4.163 28 O -0.159 6.159 29 C 0.178 3.822 30 H 0.247 0.753 31 H 0.021 0.979 32 H 0.057 0.943 33 H 0.099 0.901 34 H 0.054 0.946 35 H 0.087 0.913 36 H 0.074 0.926 37 H 0.414 0.586 38 H 0.168 0.832 39 H 0.199 0.801 40 H 0.171 0.829 41 H 0.192 0.808 42 H 0.182 0.818 43 H 0.146 0.854 44 H -0.001 1.001 45 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.725 -13.659 16.053 24.621 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.247 4.247 3 Si 0.791 3.209 4 H -0.203 1.203 5 H -0.223 1.223 6 H -0.196 1.196 7 C -0.394 4.394 8 H 0.087 0.913 9 N -0.333 5.333 10 C 0.009 3.991 11 C -0.160 4.160 12 C -0.145 4.145 13 C 0.024 3.976 14 H 0.078 0.922 15 N -0.346 5.346 16 C 0.379 3.621 17 O -0.438 6.438 18 C -0.131 4.131 19 C -0.144 4.144 20 C -0.195 4.195 21 C -0.010 4.010 22 C 0.000 4.000 23 C -0.162 4.162 24 C -0.055 4.055 25 N -0.215 5.215 26 C -0.057 4.057 27 C -0.183 4.183 28 O -0.055 6.055 29 C 0.051 3.949 30 H 0.056 0.944 31 H 0.039 0.961 32 H 0.076 0.924 33 H 0.117 0.883 34 H 0.073 0.927 35 H 0.105 0.895 36 H 0.093 0.907 37 H 0.250 0.750 38 H 0.186 0.814 39 H 0.216 0.784 40 H 0.188 0.812 41 H 0.209 0.791 42 H 0.199 0.801 43 H 0.164 0.836 44 H 0.017 0.983 45 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -12.967 -13.670 16.031 24.738 hybrid contribution 0.948 1.679 -0.583 2.014 sum -12.018 -11.991 15.447 22.953 Atomic orbital electron populations 1.70169 1.06738 1.25651 1.55171 1.25829 0.96062 1.01702 1.01142 0.85341 0.78110 0.79680 0.77785 1.20320 1.22329 1.19599 1.19492 0.92934 0.86063 1.40940 0.91263 1.44247 1.35977 1.02951 1.50131 1.21202 0.97672 0.85581 0.94602 1.21901 0.96844 1.00211 0.97032 1.21661 0.99311 0.93689 0.99884 1.21672 0.86459 0.98464 0.91021 0.92204 1.45847 1.26216 1.31149 1.31390 1.16887 0.83292 0.81863 0.80013 1.90905 1.44871 1.35802 1.72207 1.21965 0.92509 0.95390 1.03228 1.22170 0.97633 1.00163 0.94411 1.22144 0.96741 0.96795 1.03807 1.20964 0.91084 0.98089 0.90902 1.18261 0.90391 0.94310 0.97085 1.22441 0.94196 1.02306 0.97257 1.23255 0.95365 0.89506 0.97419 1.67698 1.31832 1.16623 1.05359 1.23078 0.89443 0.99031 0.94118 1.22510 0.99647 0.95454 1.00695 1.84010 1.28192 1.46107 1.47210 1.20778 0.88223 0.97425 0.88448 0.94389 0.96082 0.92434 0.88268 0.92747 0.89492 0.90745 0.74967 0.81438 0.78381 0.81173 0.79096 0.80133 0.83569 0.98277 0.93662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.24 11.20 21.65 0.24 -58.00 16 2 C -0.05 -3.06 4.92 84.86 0.42 -2.65 16 3 Si 0.96 47.65 29.59 68.60 2.03 49.68 16 4 H -0.28 -13.12 7.11 99.48 0.71 -12.41 16 5 H -0.30 -14.92 7.11 99.48 0.71 -14.21 16 6 H -0.27 -12.93 7.11 99.48 0.71 -12.22 16 7 C -0.26 -15.17 9.58 84.03 0.81 -14.36 16 8 H 0.07 3.84 7.88 -2.92 -0.02 3.81 16 9 N -0.61 -31.58 2.99 -699.09 -2.09 -33.67 16 10 C 0.13 5.42 6.52 86.36 0.56 5.98 16 11 C -0.12 -3.71 6.08 30.67 0.19 -3.52 16 12 C -0.11 -3.17 5.35 30.62 0.16 -3.01 16 13 C 0.13 5.09 2.61 45.07 0.12 5.21 16 14 H 0.06 2.69 7.57 -2.39 -0.02 2.67 16 15 N -0.70 -23.76 5.08 -446.12 -2.26 -26.02 16 16 C 0.59 22.38 7.75 86.44 0.67 23.05 16 17 O -0.56 -26.08 16.52 -4.36 -0.07 -26.15 16 18 C -0.08 -2.37 7.12 24.12 0.17 -2.20 16 19 C -0.12 -3.17 10.59 22.32 0.24 -2.93 16 20 C -0.18 -3.29 10.26 22.27 0.23 -3.06 16 21 C 0.04 0.86 7.05 24.38 0.17 1.03 16 22 C 0.01 0.13 5.91 -19.90 -0.12 0.01 16 23 C -0.14 -1.66 9.64 22.64 0.22 -1.44 16 24 C 0.10 1.19 11.17 84.61 0.95 2.13 16 25 N -0.51 -8.22 10.34 -196.17 -2.03 -10.25 16 26 C 0.10 1.45 11.17 84.61 0.95 2.39 16 27 C -0.16 -2.62 9.82 22.64 0.22 -2.40 16 28 O -0.16 -4.09 10.23 -9.20 -0.09 -4.18 16 29 C 0.18 9.05 4.88 86.36 0.42 9.47 16 30 H 0.25 15.08 8.31 -92.71 -0.77 14.31 16 31 H 0.02 0.84 8.14 -2.39 -0.02 0.82 16 32 H 0.06 2.27 7.93 -2.39 -0.02 2.25 16 33 H 0.10 2.29 8.14 -2.39 -0.02 2.27 16 34 H 0.05 1.77 8.14 -2.38 -0.02 1.75 16 35 H 0.09 2.05 8.14 -2.39 -0.02 2.03 16 36 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 37 H 0.41 11.21 8.35 -92.71 -0.77 10.44 16 38 H 0.17 4.15 8.06 -2.91 -0.02 4.12 16 39 H 0.20 1.99 7.33 -2.91 -0.02 1.96 16 40 H 0.17 0.92 7.12 -2.91 -0.02 0.90 16 41 H 0.19 0.96 8.06 -2.91 -0.02 0.94 16 42 H 0.18 1.69 8.06 -2.91 -0.02 1.66 16 43 H 0.15 2.13 7.99 -2.91 -0.02 2.11 16 44 H 0.00 -0.04 8.14 -2.39 -0.02 -0.06 16 45 H 0.04 2.75 6.06 -2.39 -0.01 2.73 16 Total: -1.00 -79.31 379.28 2.34 -76.98 By element: Atomic # 1 Polarization: 17.65 SS G_CDS: 0.25 Total: 17.90 kcal Atomic # 6 Polarization: 7.34 SS G_CDS: 6.37 Total: 13.71 kcal Atomic # 7 Polarization: -121.79 SS G_CDS: -6.14 Total: -127.93 kcal Atomic # 8 Polarization: -30.17 SS G_CDS: -0.17 Total: -30.33 kcal Atomic # 14 Polarization: 47.65 SS G_CDS: 2.03 Total: 49.68 kcal Total: -79.31 2.34 -76.98 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001007490832.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.581 kcal (2) G-P(sol) polarization free energy of solvation -79.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.267 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.335 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.978 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.603 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds