Wall clock time and date at job start Sat Apr 11 2020 06:17:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86805 * 120.00008 * 2 1 4 4 H 1.48502 * 109.46940 * 272.96342 * 3 2 1 5 5 H 1.48497 * 109.47139 * 32.96222 * 3 2 1 6 6 H 1.48499 * 109.47200 * 152.96113 * 3 2 1 7 7 C 1.38814 * 120.00208 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99580 * 339.33738 * 7 2 1 9 9 N 1.36939 * 120.00086 * 159.34648 * 7 2 1 10 10 C 1.46925 * 120.62956 * 332.61713 * 9 7 2 11 11 C 1.53192 * 108.77573 * 233.63611 * 10 9 7 12 12 C 1.53046 * 109.33691 * 305.34892 * 11 10 9 13 13 C 1.53103 * 109.50171 * 61.34884 * 12 11 10 14 14 H 1.08997 * 109.49353 * 58.61606 * 13 12 11 15 15 N 1.46507 * 109.51266 * 178.68490 * 13 12 11 16 16 C 1.34776 * 119.99522 * 204.87333 * 15 13 12 17 17 O 1.21694 * 120.00454 * 359.97438 * 16 15 13 18 18 C 1.46668 * 119.99585 * 180.02562 * 16 15 13 19 19 C 1.36722 * 125.85990 * 179.71492 * 18 16 15 20 20 C 1.39911 * 106.91695 * 179.90516 * 19 18 16 21 21 C 1.36512 * 107.01930 * 0.35042 * 20 19 18 22 22 C 1.47748 * 125.76440 * 179.75937 * 21 20 19 23 23 C 1.40034 * 120.93335 * 359.72671 * 22 21 20 24 24 C 1.37946 * 118.98290 * 179.71119 * 23 22 21 25 25 N 1.31931 * 120.90707 * 0.57080 * 24 23 22 26 26 C 1.31920 * 122.07829 * 359.72246 * 25 24 23 27 27 C 1.37950 * 120.91068 * 359.97316 * 26 25 24 28 28 O 1.34384 * 108.46983 * 359.78368 * 21 20 19 29 29 C 1.46928 * 120.62784 * 152.64743 * 9 7 2 30 30 H 0.97002 * 120.00185 * 359.97438 * 1 2 3 31 31 H 1.08996 * 109.58593 * 113.84690 * 10 9 7 32 32 H 1.08995 * 109.70375 * 353.49115 * 10 9 7 33 33 H 1.08997 * 109.49937 * 65.31549 * 11 10 9 34 34 H 1.08999 * 109.49926 * 185.38561 * 11 10 9 35 35 H 1.08998 * 109.45947 * 181.40562 * 12 11 10 36 36 H 1.09001 * 109.46068 * 301.36547 * 12 11 10 37 37 H 0.96994 * 119.99964 * 24.87043 * 15 13 12 38 38 H 1.08002 * 126.54074 * 0.02562 * 19 18 16 39 39 H 1.08002 * 126.48947 * 180.10136 * 20 19 18 40 40 H 1.08005 * 120.50666 * 359.97031 * 23 22 21 41 41 H 1.07995 * 119.54338 * 180.29643 * 24 23 22 42 42 H 1.08002 * 119.54682 * 179.97438 * 26 25 24 43 43 H 1.07997 * 120.50622 * 179.97438 * 27 26 25 44 44 H 1.09005 * 109.58113 * 246.15314 * 29 9 7 45 45 H 1.08994 * 109.58724 * 6.57305 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4350 2.0826 -1.3982 5 1 1.4804 2.6338 0.7617 6 1 3.5776 1.4230 0.6365 7 6 2.0103 -1.2021 -0.0005 8 1 1.5223 -2.1075 0.3291 9 7 3.3136 -1.2400 -0.4188 10 6 3.8172 -0.2584 -1.3891 11 6 4.4611 -1.0079 -2.5598 12 6 5.5282 -1.9649 -2.0234 13 6 4.8741 -2.9905 -1.0936 14 1 4.1070 -3.5394 -1.6398 15 7 5.8901 -3.9259 -0.6047 16 6 5.5316 -5.1626 -0.2068 17 8 4.3640 -5.5023 -0.2533 18 6 6.5488 -6.0989 0.2832 19 6 6.3195 -7.3740 0.7199 20 6 7.5592 -7.9064 1.0906 21 6 8.4926 -6.9343 0.8733 22 6 9.9423 -7.0561 1.1312 23 6 10.4845 -8.2389 1.6488 24 6 11.8445 -8.3107 1.8685 25 7 12.6282 -7.2817 1.6085 26 6 12.1582 -6.1474 1.1260 27 6 10.8118 -5.9899 0.8703 28 8 7.8701 -5.8477 0.3858 29 6 4.2348 -2.2635 0.0937 30 1 -0.4850 0.8400 0.0004 31 1 4.5602 0.3799 -0.9110 32 1 2.9923 0.3524 -1.7558 33 1 3.6980 -1.5755 -3.0923 34 1 4.9231 -0.2923 -3.2399 35 1 6.0050 -2.4811 -2.8566 36 1 6.2779 -1.3995 -1.4699 37 1 6.8208 -3.6550 -0.5673 38 1 5.3642 -7.8755 0.7675 39 1 7.7423 -8.8973 1.4793 40 1 9.8482 -9.0835 1.8687 41 1 12.2729 -9.2202 2.2629 42 1 12.8369 -5.3309 0.9284 43 1 10.4341 -5.0582 0.4757 44 1 5.0118 -1.7886 0.6928 45 1 3.6838 -2.9775 0.7057 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001007490833.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:43 Heat of formation + Delta-G solvation = 43.941555 kcal Electronic energy + Delta-G solvation = -28464.680742 eV Core-core repulsion = 24449.673846 eV Total energy + Delta-G solvation = -4015.006896 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -43.06448 -40.44196 -39.68110 -37.67843 -34.70559 -34.16239 -33.25921 -32.56506 -31.73577 -30.87491 -30.17956 -28.75593 -25.36541 -25.09124 -24.18244 -23.13303 -22.05623 -21.75786 -21.70560 -20.38679 -19.84189 -18.70592 -17.57142 -16.87229 -16.74870 -16.59472 -16.26391 -15.87731 -15.39931 -15.00746 -14.85118 -14.34767 -14.34110 -14.21257 -13.98284 -13.78546 -13.46087 -13.37826 -13.25408 -13.10784 -12.92051 -12.40889 -12.13671 -12.11805 -11.57286 -11.24471 -11.06512 -10.96824 -10.80790 -10.32830 -10.31561 -10.20580 -10.05171 -9.97061 -9.76407 -9.72066 -9.49044 -9.16567 -8.65753 -8.52654 -7.00079 -5.93917 -3.30999 -0.01835 0.60545 1.17413 2.11467 2.12801 3.05300 3.10818 3.30473 3.35077 3.47513 3.50100 3.88067 3.95047 4.26560 4.41980 4.47793 4.52444 4.59508 4.65569 4.97902 5.01676 5.08332 5.10391 5.22337 5.25071 5.28219 5.35583 5.37935 5.47352 5.57204 5.62040 5.74835 5.87494 5.96992 5.97381 6.09862 6.13499 6.26679 6.34309 6.36517 6.45057 6.57733 6.61445 6.70068 6.87988 7.44252 7.45931 7.94599 8.08008 8.34282 8.93768 9.71579 10.06707 11.21868 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.019898 B = 0.002220 C = 0.002111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1406.845235 B =12609.097199 C =13260.938299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.023 3.977 3 Si 0.883 3.117 4 H -0.288 1.288 5 H -0.303 1.303 6 H -0.271 1.271 7 C -0.260 4.260 8 H 0.087 0.913 9 N -0.601 5.601 10 C 0.121 3.879 11 C -0.132 4.132 12 C -0.116 4.116 13 C 0.123 3.877 14 H 0.095 0.905 15 N -0.710 5.710 16 C 0.596 3.404 17 O -0.505 6.505 18 C -0.049 4.049 19 C -0.126 4.126 20 C -0.181 4.181 21 C 0.036 3.964 22 C 0.029 3.971 23 C -0.152 4.152 24 C 0.105 3.895 25 N -0.484 5.484 26 C 0.106 3.894 27 C -0.156 4.156 28 O -0.155 6.155 29 C 0.144 3.856 30 H 0.263 0.737 31 H 0.026 0.974 32 H 0.075 0.925 33 H 0.068 0.932 34 H 0.060 0.940 35 H 0.059 0.941 36 H 0.062 0.938 37 H 0.400 0.600 38 H 0.167 0.833 39 H 0.161 0.839 40 H 0.143 0.857 41 H 0.163 0.837 42 H 0.162 0.838 43 H 0.143 0.857 44 H 0.024 0.976 45 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.514 -15.417 0.147 28.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.175 4.175 3 Si 0.714 3.286 4 H -0.216 1.216 5 H -0.231 1.231 6 H -0.197 1.197 7 C -0.388 4.388 8 H 0.105 0.895 9 N -0.324 5.324 10 C -0.004 4.004 11 C -0.171 4.171 12 C -0.154 4.154 13 C 0.018 3.982 14 H 0.113 0.887 15 N -0.359 5.359 16 C 0.381 3.619 17 O -0.382 6.382 18 C -0.102 4.102 19 C -0.146 4.146 20 C -0.200 4.200 21 C -0.016 4.016 22 C 0.021 3.979 23 C -0.172 4.172 24 C -0.051 4.051 25 N -0.193 5.193 26 C -0.051 4.051 27 C -0.176 4.176 28 O -0.051 6.051 29 C 0.016 3.984 30 H 0.073 0.927 31 H 0.044 0.956 32 H 0.093 0.907 33 H 0.087 0.913 34 H 0.079 0.921 35 H 0.077 0.923 36 H 0.080 0.920 37 H 0.234 0.766 38 H 0.185 0.815 39 H 0.179 0.821 40 H 0.161 0.839 41 H 0.180 0.820 42 H 0.179 0.821 43 H 0.161 0.839 44 H 0.042 0.958 45 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 24.503 -15.325 0.205 28.902 hybrid contribution -0.125 1.078 -0.077 1.088 sum 24.378 -14.248 0.128 28.236 Atomic orbital electron populations 1.69840 1.05695 1.26520 1.52857 1.25271 0.95235 0.97522 0.99512 0.86951 0.80011 0.84712 0.76965 1.21592 1.23140 1.19650 1.18947 0.84723 0.94932 1.40190 0.89511 1.44286 1.08720 1.32633 1.46804 1.21408 0.97482 0.92098 0.89436 1.22002 0.97798 0.98325 0.99017 1.21696 0.98473 0.96956 0.98306 1.21857 0.89756 0.89357 0.97191 0.88720 1.46042 1.12031 1.12968 1.64901 1.16539 0.86032 0.81081 0.78282 1.90959 1.16320 1.76592 1.54304 1.22500 0.80764 0.97638 1.09267 1.21925 0.99928 0.93203 0.99538 1.21801 0.91517 1.00833 1.05893 1.20448 0.91948 0.86087 1.03108 1.18084 0.87634 0.94818 0.97362 1.22123 0.97117 0.97503 1.00422 1.22726 0.89570 0.97267 0.95557 1.67657 1.40281 1.00351 1.11017 1.22762 0.93216 0.95216 0.93869 1.22358 0.94663 0.99577 1.00959 1.84047 1.19470 1.37073 1.64466 1.21218 0.92796 0.91453 0.92889 0.92748 0.95603 0.90663 0.91280 0.92101 0.92278 0.91971 0.76584 0.81504 0.82139 0.83947 0.81986 0.82079 0.83929 0.95845 0.91280 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.03 13.97 55.49 0.78 -27.26 16 2 C 0.02 0.68 5.23 -17.43 -0.09 0.59 16 3 Si 0.88 22.33 24.35 -169.99 -4.14 18.19 16 4 H -0.29 -6.96 6.62 56.52 0.37 -6.59 16 5 H -0.30 -7.82 7.11 56.52 0.40 -7.42 16 6 H -0.27 -6.72 6.63 56.52 0.37 -6.35 16 7 C -0.26 -7.39 10.04 -15.06 -0.15 -7.54 16 8 H 0.09 2.68 8.06 -52.48 -0.42 2.26 16 9 N -0.60 -14.36 2.77 -172.32 -0.48 -14.84 16 10 C 0.12 2.58 4.20 -3.71 -0.02 2.56 16 11 C -0.13 -2.20 6.08 -26.61 -0.16 -2.36 16 12 C -0.12 -1.66 5.36 -26.65 -0.14 -1.80 16 13 C 0.12 2.04 2.60 -67.78 -0.18 1.86 16 14 H 0.09 1.81 7.58 -51.93 -0.39 1.41 16 15 N -0.71 -9.71 5.08 -54.97 -0.28 -9.99 16 16 C 0.60 8.98 7.75 -12.86 -0.10 8.88 16 17 O -0.51 -9.54 16.52 5.19 0.09 -9.45 16 18 C -0.05 -0.60 7.12 -36.73 -0.26 -0.87 16 19 C -0.13 -1.37 10.59 -39.50 -0.42 -1.78 16 20 C -0.18 -1.57 10.26 -39.58 -0.41 -1.97 16 21 C 0.04 0.34 7.05 -36.32 -0.26 0.08 16 22 C 0.03 0.24 5.91 -104.66 -0.62 -0.38 16 23 C -0.15 -0.94 9.64 -39.02 -0.38 -1.32 16 24 C 0.11 0.67 11.17 -17.62 -0.20 0.47 16 25 N -0.48 -4.00 10.34 -13.36 -0.14 -4.14 16 26 C 0.11 0.75 11.17 -17.62 -0.20 0.55 16 27 C -0.16 -1.16 9.82 -39.01 -0.38 -1.54 16 28 O -0.15 -1.69 10.23 3.85 0.04 -1.66 16 29 C 0.14 2.91 6.09 -3.71 -0.02 2.89 16 30 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 31 H 0.03 0.54 7.08 -51.93 -0.37 0.17 16 32 H 0.08 1.76 4.49 -51.93 -0.23 1.53 16 33 H 0.07 1.22 8.14 -51.93 -0.42 0.79 16 34 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 37 H 0.40 4.33 8.35 -40.82 -0.34 3.99 16 38 H 0.17 1.68 8.06 -52.49 -0.42 1.26 16 39 H 0.16 0.88 7.33 -52.49 -0.38 0.49 16 40 H 0.14 0.53 7.12 -52.48 -0.37 0.16 16 41 H 0.16 0.56 8.06 -52.49 -0.42 0.14 16 42 H 0.16 0.73 8.06 -52.49 -0.42 0.31 16 43 H 0.14 0.90 7.99 -52.49 -0.42 0.48 16 44 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 45 H 0.07 1.53 7.93 -51.93 -0.41 1.11 16 LS Contribution 372.84 15.07 5.62 5.62 Total: -1.00 -34.51 372.84 -8.41 -42.91 By element: Atomic # 1 Polarization: 8.19 SS G_CDS: -5.92 Total: 2.27 kcal Atomic # 6 Polarization: 2.31 SS G_CDS: -3.97 Total: -1.67 kcal Atomic # 7 Polarization: -56.10 SS G_CDS: -0.12 Total: -56.22 kcal Atomic # 8 Polarization: -11.23 SS G_CDS: 0.13 Total: -11.11 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -4.14 Total: 18.19 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -34.51 -8.41 -42.91 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001007490833.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.855 kcal (2) G-P(sol) polarization free energy of solvation -34.506 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.350 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.408 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.914 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds