Wall clock time and date at job start Sat Apr 11 2020 06:17:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86800 * 120.00099 * 2 1 4 4 H 1.48501 * 109.47212 * 89.99537 * 3 2 1 5 5 H 1.48499 * 109.47177 * 330.00080 * 3 2 1 6 6 H 1.48495 * 109.47256 * 209.99661 * 3 2 1 7 7 C 1.38810 * 119.99693 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00337 * 18.73286 * 7 2 1 9 9 N 1.36941 * 119.99765 * 198.72880 * 7 2 1 10 10 C 1.46923 * 120.63018 * 30.81750 * 9 7 2 11 11 C 1.53621 * 108.54299 * 126.37386 * 10 9 7 12 12 C 1.53041 * 109.24760 * 54.85173 * 11 10 9 13 13 C 1.53044 * 109.53483 * 298.51635 * 12 11 10 14 14 H 1.09006 * 109.49643 * 301.41095 * 13 12 11 15 15 N 1.46502 * 109.49300 * 181.31588 * 13 12 11 16 16 C 1.34774 * 119.99703 * 155.16356 * 15 13 12 17 17 O 1.21518 * 120.00133 * 359.97438 * 16 15 13 18 18 C 1.48152 * 119.99956 * 179.97438 * 16 15 13 19 19 C 1.40028 * 120.86148 * 359.72123 * 18 16 15 20 20 C 1.38150 * 119.26660 * 179.79798 * 19 18 16 21 21 N 1.31719 * 121.06015 * 0.48398 * 20 19 18 22 22 C 1.32819 * 121.90603 * 359.74097 * 21 20 19 23 23 C 1.47654 * 119.69859 * 180.02562 * 22 21 20 24 24 C 1.36033 * 125.94042 * 359.73670 * 23 22 21 25 25 C 1.40824 * 106.73957 * 179.91175 * 24 23 22 26 26 C 1.34814 * 107.03861 * 0.35525 * 25 24 23 27 27 O 1.34222 * 108.68710 * 359.78026 * 26 25 24 28 28 C 1.39475 * 120.86302 * 179.97438 * 18 16 15 29 29 C 1.46922 * 120.62587 * 211.09939 * 9 7 2 30 30 H 0.97001 * 120.00345 * 174.95786 * 1 2 3 31 31 H 1.09004 * 109.58214 * 246.19920 * 10 9 7 32 32 H 1.08996 * 109.58833 * 6.62563 * 10 9 7 33 33 H 1.09007 * 109.63186 * 294.85786 * 11 10 9 34 34 H 1.09001 * 109.43272 * 174.72806 * 11 10 9 35 35 H 1.08994 * 109.46113 * 178.49374 * 12 11 10 36 36 H 1.08999 * 109.44504 * 58.52556 * 12 11 10 37 37 H 0.97000 * 120.00337 * 335.15868 * 15 13 12 38 38 H 1.07997 * 120.36807 * 359.97438 * 19 18 16 39 39 H 1.07994 * 119.47260 * 180.23099 * 20 19 18 40 40 H 1.08000 * 126.62624 * 0.02562 * 24 23 22 41 41 H 1.07993 * 126.48264 * 180.15520 * 25 24 23 42 42 H 1.08003 * 125.65239 * 179.76621 * 26 25 24 43 43 H 1.07995 * 120.55730 * 359.95841 * 28 18 16 44 44 H 1.08998 * 109.59143 * 353.36785 * 29 9 7 45 45 H 1.09001 * 109.58916 * 113.80207 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4976 2.0465 1.4001 5 1 1.4477 2.6527 -0.7000 6 1 3.5478 1.4401 -0.6999 7 6 2.0102 -1.2022 0.0005 8 1 1.5131 -2.1128 -0.2994 9 7 3.3252 -1.2334 0.3814 10 6 3.8390 -0.2827 1.3768 11 6 4.5287 -1.0746 2.4981 12 6 5.5973 -1.9852 1.8890 13 6 4.9366 -2.9809 0.9327 14 1 4.1957 -3.5689 1.4745 15 7 5.9562 -3.8724 0.3742 16 6 5.6103 -5.0970 -0.0698 17 8 4.4529 -5.4619 -0.0064 18 6 6.6412 -5.9984 -0.6351 19 6 7.9791 -5.5943 -0.7222 20 6 8.9139 -6.4631 -1.2513 21 7 8.5643 -7.6577 -1.6820 22 6 7.3079 -8.0846 -1.6249 23 6 6.9703 -9.4336 -2.1213 24 6 7.8426 -10.3275 -2.6601 25 6 7.0953 -11.4742 -2.9916 26 6 5.8154 -11.2239 -2.6501 27 8 5.7437 -9.9908 -2.1249 28 6 6.3034 -7.2696 -1.0993 29 6 4.2503 -2.2143 -0.2023 30 1 -0.4851 -0.8368 -0.0738 31 1 4.5569 0.3881 0.9047 32 1 3.0128 0.2953 1.7905 33 1 3.7917 -1.6805 3.0252 34 1 4.9968 -0.3811 3.1967 35 1 6.1072 -2.5290 2.6841 36 1 6.3200 -1.3805 1.3412 37 1 6.8801 -3.5813 0.3238 38 1 8.2774 -4.6155 -0.3769 39 1 9.9473 -6.1563 -1.3165 40 1 8.9036 -10.1860 -2.8038 41 1 7.4751 -12.3811 -3.4383 42 1 4.9854 -11.9030 -2.7781 43 1 5.2821 -7.6175 -1.0530 44 1 3.6956 -2.9110 -0.8307 45 1 5.0011 -1.6977 -0.8004 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001007569578.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:54 Heat of formation + Delta-G solvation = 42.411913 kcal Electronic energy + Delta-G solvation = -28509.840061 eV Core-core repulsion = 24494.766835 eV Total energy + Delta-G solvation = -4015.073226 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.87499 -40.80001 -39.38873 -37.62500 -34.66881 -33.70025 -33.05725 -32.52536 -32.41521 -30.78937 -29.36173 -28.87987 -25.25369 -25.03279 -24.13250 -22.78767 -21.84931 -21.66888 -21.51025 -20.29696 -19.77356 -18.61718 -17.42050 -17.32462 -16.75723 -16.42628 -16.08557 -15.66357 -15.59128 -15.23507 -14.93404 -14.44535 -14.26194 -14.02327 -13.96281 -13.55645 -13.46779 -13.26586 -13.15823 -12.91511 -12.80003 -12.41105 -12.19222 -12.13095 -11.61872 -11.16739 -10.96250 -10.67600 -10.49212 -10.38092 -10.23342 -10.12875 -10.00529 -9.89836 -9.77659 -9.62999 -9.17472 -9.07037 -8.46230 -8.43425 -7.05803 -6.22959 -3.35210 0.11448 0.53274 1.56891 2.28052 2.35249 2.85011 2.97255 3.37580 3.52020 3.58030 3.67938 3.93855 4.21315 4.30568 4.51333 4.57485 4.59887 4.68789 4.70848 4.88267 5.02591 5.11311 5.23146 5.29824 5.31987 5.40109 5.46427 5.49994 5.56770 5.64571 5.74874 5.75865 5.87871 5.97302 6.09245 6.13654 6.16512 6.26913 6.36064 6.40229 6.56542 6.63003 6.71187 6.71351 6.87769 7.40935 7.46092 8.04935 8.15311 8.45801 9.07961 9.58624 10.19772 11.14993 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.019162 B = 0.002278 C = 0.002121 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1460.905089 B =12290.524187 C =13196.228015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.016 4.016 3 Si 1.069 2.931 4 H -0.293 1.293 5 H -0.299 1.299 6 H -0.286 1.286 7 C -0.343 4.343 8 H 0.065 0.935 9 N -0.600 5.600 10 C 0.120 3.880 11 C -0.132 4.132 12 C -0.116 4.116 13 C 0.124 3.876 14 H 0.091 0.909 15 N -0.713 5.713 16 C 0.552 3.448 17 O -0.518 6.518 18 C -0.074 4.074 19 C -0.142 4.142 20 C 0.108 3.892 21 N -0.458 5.458 22 C 0.198 3.802 23 C 0.015 3.985 24 C -0.150 4.150 25 C -0.222 4.222 26 C -0.019 4.019 27 O -0.166 6.166 28 C -0.097 4.097 29 C 0.142 3.858 30 H 0.263 0.737 31 H 0.028 0.972 32 H 0.076 0.924 33 H 0.066 0.934 34 H 0.060 0.940 35 H 0.057 0.943 36 H 0.062 0.938 37 H 0.395 0.605 38 H 0.144 0.856 39 H 0.170 0.830 40 H 0.158 0.842 41 H 0.153 0.847 42 H 0.209 0.791 43 H 0.154 0.846 44 H 0.063 0.937 45 H 0.021 0.979 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.601 -17.010 -1.591 27.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.217 4.217 3 Si 0.901 3.099 4 H -0.221 1.221 5 H -0.227 1.227 6 H -0.212 1.212 7 C -0.472 4.472 8 H 0.083 0.917 9 N -0.324 5.324 10 C -0.005 4.005 11 C -0.172 4.172 12 C -0.154 4.154 13 C 0.019 3.981 14 H 0.109 0.891 15 N -0.364 5.364 16 C 0.337 3.663 17 O -0.393 6.393 18 C -0.085 4.085 19 C -0.162 4.162 20 C -0.050 4.050 21 N -0.169 5.169 22 C 0.062 3.938 23 C -0.036 4.036 24 C -0.170 4.170 25 C -0.241 4.241 26 C -0.088 4.088 27 O -0.061 6.061 28 C -0.118 4.118 29 C 0.015 3.985 30 H 0.074 0.926 31 H 0.045 0.955 32 H 0.094 0.906 33 H 0.085 0.915 34 H 0.079 0.921 35 H 0.076 0.924 36 H 0.081 0.919 37 H 0.230 0.770 38 H 0.162 0.838 39 H 0.187 0.813 40 H 0.175 0.825 41 H 0.171 0.829 42 H 0.225 0.775 43 H 0.171 0.829 44 H 0.082 0.918 45 H 0.039 0.961 Dipole moment (debyes) X Y Z Total from point charges 20.864 -16.002 -1.719 26.350 hybrid contribution 0.204 -1.180 0.138 1.205 sum 21.067 -17.182 -1.581 27.231 Atomic orbital electron populations 1.70885 1.06022 1.30064 1.49104 1.26276 0.96660 1.01257 0.97550 0.83718 0.74622 0.75651 0.75936 1.22114 1.22725 1.21223 1.20257 0.85390 0.95129 1.46441 0.91681 1.44287 1.07148 1.36922 1.44066 1.21532 0.97266 0.92314 0.89397 1.22077 0.97631 0.98602 0.98852 1.21683 0.98430 0.97260 0.98028 1.21817 0.89539 0.90388 0.96342 0.89124 1.46015 1.12335 1.15081 1.62938 1.18088 0.87777 0.81771 0.78675 1.90849 1.19089 1.74840 1.54560 1.20435 0.94106 0.94992 0.98998 1.22455 0.92716 1.01514 0.99518 1.22655 1.00239 0.88047 0.94010 1.67304 1.17825 1.16540 1.15183 1.18153 0.89107 0.90053 0.96483 1.19641 0.82911 0.93760 1.07261 1.21897 1.01037 0.92715 1.01393 1.21864 0.93559 1.00917 1.07734 1.24288 0.99696 0.84698 1.00149 1.84066 1.30723 1.27190 1.64102 1.22296 1.01534 0.92670 0.95308 1.21235 0.92679 0.91856 0.92775 0.92621 0.95463 0.90571 0.91532 0.92087 0.92398 0.91941 0.76999 0.83816 0.81274 0.82462 0.82884 0.77456 0.82880 0.91821 0.96075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -28.99 13.70 55.49 0.76 -28.23 16 2 C -0.02 -0.47 5.24 -17.43 -0.09 -0.56 16 3 Si 1.07 26.41 24.73 -169.99 -4.20 22.21 16 4 H -0.29 -6.71 6.56 56.52 0.37 -6.34 16 5 H -0.30 -7.53 7.11 56.52 0.40 -7.13 16 6 H -0.29 -6.72 6.80 56.52 0.38 -6.33 16 7 C -0.34 -9.90 9.88 -15.06 -0.15 -10.04 16 8 H 0.07 2.05 8.06 -52.49 -0.42 1.63 16 9 N -0.60 -14.53 2.72 -172.06 -0.47 -15.00 16 10 C 0.12 2.54 4.23 -3.49 -0.01 2.52 16 11 C -0.13 -2.19 6.10 -26.39 -0.16 -2.35 16 12 C -0.12 -1.63 5.35 -26.69 -0.14 -1.78 16 13 C 0.12 2.07 2.60 -67.81 -0.18 1.90 16 14 H 0.09 1.79 7.58 -51.93 -0.39 1.39 16 15 N -0.71 -9.37 5.04 -54.53 -0.27 -9.65 16 16 C 0.55 8.29 7.76 -12.19 -0.09 8.19 16 17 O -0.52 -10.17 16.10 5.35 0.09 -10.08 16 18 C -0.07 -0.89 5.90 -104.69 -0.62 -1.51 16 19 C -0.14 -1.19 9.61 -38.94 -0.37 -1.57 16 20 C 0.11 0.88 11.16 -17.63 -0.20 0.68 16 21 N -0.46 -4.89 10.02 -9.92 -0.10 -4.99 16 22 C 0.20 2.36 6.75 -83.08 -0.56 1.80 16 23 C 0.01 0.17 7.03 -36.53 -0.26 -0.09 16 24 C -0.15 -1.48 10.58 -39.40 -0.42 -1.89 16 25 C -0.22 -1.76 10.89 -39.82 -0.43 -2.19 16 26 C -0.02 -0.15 12.08 29.52 0.36 0.20 16 27 O -0.17 -1.86 10.39 4.77 0.05 -1.81 16 28 C -0.10 -1.24 9.32 -38.61 -0.36 -1.60 16 29 C 0.14 2.94 6.09 -3.71 -0.02 2.92 16 30 H 0.26 8.28 8.73 -40.82 -0.36 7.93 16 31 H 0.03 0.55 7.10 -51.93 -0.37 0.18 16 32 H 0.08 1.76 4.76 -51.93 -0.25 1.51 16 33 H 0.07 1.18 8.14 -51.92 -0.42 0.76 16 34 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 35 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.40 3.66 6.74 -40.82 -0.27 3.38 16 38 H 0.14 0.75 6.52 -52.49 -0.34 0.41 16 39 H 0.17 0.75 8.06 -52.49 -0.42 0.33 16 40 H 0.16 1.37 8.06 -52.49 -0.42 0.94 16 41 H 0.15 0.81 8.06 -52.49 -0.42 0.39 16 42 H 0.21 0.81 8.06 -52.48 -0.42 0.39 16 43 H 0.15 2.07 7.58 -52.49 -0.40 1.68 16 44 H 0.06 1.47 7.93 -51.93 -0.41 1.06 16 45 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 LS Contribution 371.68 15.07 5.60 5.60 Total: -1.00 -35.97 371.68 -8.13 -44.10 By element: Atomic # 1 Polarization: 9.09 SS G_CDS: -5.86 Total: 3.22 kcal Atomic # 6 Polarization: -1.66 SS G_CDS: -3.71 Total: -5.37 kcal Atomic # 7 Polarization: -57.78 SS G_CDS: -0.08 Total: -57.86 kcal Atomic # 8 Polarization: -12.03 SS G_CDS: 0.14 Total: -11.90 kcal Atomic # 14 Polarization: 26.41 SS G_CDS: -4.20 Total: 22.21 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -35.97 -8.13 -44.10 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001007569578.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.511 kcal (2) G-P(sol) polarization free energy of solvation -35.974 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.537 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.100 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds