Wall clock time and date at job start Sat Apr 11 2020 06:17:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86800 * 120.00099 * 2 1 4 4 H 1.48501 * 109.47212 * 89.99537 * 3 2 1 5 5 H 1.48499 * 109.47177 * 330.00080 * 3 2 1 6 6 H 1.48495 * 109.47256 * 209.99661 * 3 2 1 7 7 C 1.38810 * 119.99693 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00337 * 18.73286 * 7 2 1 9 9 N 1.36941 * 119.99765 * 198.72880 * 7 2 1 10 10 C 1.46923 * 120.63018 * 30.81750 * 9 7 2 11 11 C 1.53621 * 108.54299 * 126.37386 * 10 9 7 12 12 C 1.53041 * 109.24760 * 54.85173 * 11 10 9 13 13 C 1.53044 * 109.53483 * 298.51635 * 12 11 10 14 14 H 1.09006 * 109.49643 * 301.41095 * 13 12 11 15 15 N 1.46502 * 109.49300 * 181.31588 * 13 12 11 16 16 C 1.34774 * 119.99703 * 155.16356 * 15 13 12 17 17 O 1.21518 * 120.00133 * 359.97438 * 16 15 13 18 18 C 1.48152 * 119.99956 * 179.97438 * 16 15 13 19 19 C 1.40028 * 120.86148 * 359.72123 * 18 16 15 20 20 C 1.38150 * 119.26660 * 179.79798 * 19 18 16 21 21 N 1.31719 * 121.06015 * 0.48398 * 20 19 18 22 22 C 1.32819 * 121.90603 * 359.74097 * 21 20 19 23 23 C 1.47654 * 119.69859 * 180.02562 * 22 21 20 24 24 C 1.36033 * 125.94042 * 359.73670 * 23 22 21 25 25 C 1.40824 * 106.73957 * 179.91175 * 24 23 22 26 26 C 1.34814 * 107.03861 * 0.35525 * 25 24 23 27 27 O 1.34222 * 108.68710 * 359.78026 * 26 25 24 28 28 C 1.39475 * 120.86302 * 179.97438 * 18 16 15 29 29 C 1.46922 * 120.62587 * 211.09939 * 9 7 2 30 30 H 0.97001 * 120.00345 * 174.95786 * 1 2 3 31 31 H 1.09004 * 109.58214 * 246.19920 * 10 9 7 32 32 H 1.08996 * 109.58833 * 6.62563 * 10 9 7 33 33 H 1.09007 * 109.63186 * 294.85786 * 11 10 9 34 34 H 1.09001 * 109.43272 * 174.72806 * 11 10 9 35 35 H 1.08994 * 109.46113 * 178.49374 * 12 11 10 36 36 H 1.08999 * 109.44504 * 58.52556 * 12 11 10 37 37 H 0.97000 * 120.00337 * 335.15868 * 15 13 12 38 38 H 1.07997 * 120.36807 * 359.97438 * 19 18 16 39 39 H 1.07994 * 119.47260 * 180.23099 * 20 19 18 40 40 H 1.08000 * 126.62624 * 0.02562 * 24 23 22 41 41 H 1.07993 * 126.48264 * 180.15520 * 25 24 23 42 42 H 1.08003 * 125.65239 * 179.76621 * 26 25 24 43 43 H 1.07995 * 120.55730 * 359.95841 * 28 18 16 44 44 H 1.08998 * 109.59143 * 353.36785 * 29 9 7 45 45 H 1.09001 * 109.58916 * 113.80207 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4976 2.0465 1.4001 5 1 1.4477 2.6527 -0.7000 6 1 3.5478 1.4401 -0.6999 7 6 2.0102 -1.2022 0.0005 8 1 1.5131 -2.1128 -0.2994 9 7 3.3252 -1.2334 0.3814 10 6 3.8390 -0.2827 1.3768 11 6 4.5287 -1.0746 2.4981 12 6 5.5973 -1.9852 1.8890 13 6 4.9366 -2.9809 0.9327 14 1 4.1957 -3.5689 1.4745 15 7 5.9562 -3.8724 0.3742 16 6 5.6103 -5.0970 -0.0698 17 8 4.4529 -5.4619 -0.0064 18 6 6.6412 -5.9984 -0.6351 19 6 7.9791 -5.5943 -0.7222 20 6 8.9139 -6.4631 -1.2513 21 7 8.5643 -7.6577 -1.6820 22 6 7.3079 -8.0846 -1.6249 23 6 6.9703 -9.4336 -2.1213 24 6 7.8426 -10.3275 -2.6601 25 6 7.0953 -11.4742 -2.9916 26 6 5.8154 -11.2239 -2.6501 27 8 5.7437 -9.9908 -2.1249 28 6 6.3034 -7.2696 -1.0993 29 6 4.2503 -2.2143 -0.2023 30 1 -0.4851 -0.8368 -0.0738 31 1 4.5569 0.3881 0.9047 32 1 3.0128 0.2953 1.7905 33 1 3.7917 -1.6805 3.0252 34 1 4.9968 -0.3811 3.1967 35 1 6.1072 -2.5290 2.6841 36 1 6.3200 -1.3805 1.3412 37 1 6.8801 -3.5813 0.3238 38 1 8.2774 -4.6155 -0.3769 39 1 9.9473 -6.1563 -1.3165 40 1 8.9036 -10.1860 -2.8038 41 1 7.4751 -12.3811 -3.4383 42 1 4.9854 -11.9030 -2.7781 43 1 5.2821 -7.6175 -1.0530 44 1 3.6956 -2.9110 -0.8307 45 1 5.0011 -1.6977 -0.8004 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001007569578.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:53 Heat of formation + Delta-G solvation = 15.740554 kcal Electronic energy + Delta-G solvation = -28510.996618 eV Core-core repulsion = 24494.766835 eV Total energy + Delta-G solvation = -4016.229783 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -43.59576 -41.78186 -40.51260 -39.13540 -36.20517 -34.76029 -34.24451 -33.63268 -33.29793 -32.61008 -30.75868 -29.64654 -26.95099 -26.23799 -24.93487 -24.00285 -23.54475 -22.67723 -22.28438 -21.50204 -21.13834 -19.62654 -19.33557 -18.24301 -17.79865 -17.19819 -17.03585 -16.84328 -16.69107 -16.46128 -16.24734 -15.93129 -15.44598 -15.26968 -15.17971 -15.04007 -14.76501 -14.51226 -14.07120 -13.89376 -13.86726 -13.70880 -13.46974 -13.41768 -12.97977 -12.74841 -12.58047 -12.07574 -11.77047 -11.60941 -11.49033 -11.38534 -11.29683 -11.23473 -11.06277 -10.79132 -10.72322 -10.68938 -10.29671 -9.15427 -9.14382 -8.51983 -5.63861 -0.67958 -0.34045 0.86127 1.40584 1.56250 1.57135 1.69002 1.74832 1.78764 1.84213 2.52637 2.73346 3.06988 3.22177 3.28579 3.47290 3.51955 3.75552 3.78865 3.81138 3.99391 4.04644 4.08071 4.08838 4.21961 4.29609 4.37386 4.52685 4.59382 4.64860 4.68761 4.77404 4.87238 4.88907 4.95243 4.98992 5.01638 5.05730 5.06814 5.18049 5.26907 5.39851 5.48971 5.51406 5.72160 6.02227 6.19762 6.37101 6.66032 6.88893 7.04015 7.49331 8.01672 8.78345 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.019162 B = 0.002278 C = 0.002121 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1460.905089 B =12290.524187 C =13196.228015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.955 5.955 2 C -0.073 4.073 3 Si 1.117 2.883 4 H -0.259 1.259 5 H -0.308 1.308 6 H -0.260 1.260 7 C -0.336 4.336 8 H 0.010 0.990 9 N -0.619 5.619 10 C 0.110 3.890 11 C -0.127 4.127 12 C -0.105 4.105 13 C 0.137 3.863 14 H 0.049 0.951 15 N -0.690 5.690 16 C 0.550 3.450 17 O -0.579 6.579 18 C -0.088 4.088 19 C -0.120 4.120 20 C 0.118 3.882 21 N -0.466 5.466 22 C 0.188 3.812 23 C -0.023 4.023 24 C -0.148 4.148 25 C -0.225 4.225 26 C -0.020 4.020 27 O -0.192 6.192 28 C -0.122 4.122 29 C 0.142 3.858 30 H 0.244 0.756 31 H 0.055 0.945 32 H 0.052 0.948 33 H 0.042 0.958 34 H 0.104 0.896 35 H 0.093 0.907 36 H 0.096 0.904 37 H 0.421 0.579 38 H 0.187 0.813 39 H 0.218 0.782 40 H 0.167 0.833 41 H 0.183 0.817 42 H 0.244 0.756 43 H 0.126 0.874 44 H 0.017 0.983 45 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.409 -15.820 -0.902 31.660 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.597 5.597 2 C -0.267 4.267 3 Si 0.940 3.060 4 H -0.185 1.185 5 H -0.237 1.237 6 H -0.185 1.185 7 C -0.466 4.466 8 H 0.028 0.972 9 N -0.344 5.344 10 C -0.014 4.014 11 C -0.167 4.167 12 C -0.143 4.143 13 C 0.031 3.969 14 H 0.067 0.933 15 N -0.343 5.343 16 C 0.337 3.663 17 O -0.459 6.459 18 C -0.099 4.099 19 C -0.140 4.140 20 C -0.040 4.040 21 N -0.177 5.177 22 C 0.054 3.946 23 C -0.073 4.073 24 C -0.168 4.168 25 C -0.244 4.244 26 C -0.088 4.088 27 O -0.088 6.088 28 C -0.143 4.143 29 C 0.016 3.984 30 H 0.053 0.947 31 H 0.072 0.928 32 H 0.071 0.929 33 H 0.061 0.939 34 H 0.122 0.878 35 H 0.112 0.888 36 H 0.115 0.885 37 H 0.261 0.739 38 H 0.204 0.796 39 H 0.235 0.765 40 H 0.185 0.815 41 H 0.200 0.800 42 H 0.260 0.740 43 H 0.144 0.856 44 H 0.036 0.964 45 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 26.764 -14.846 -1.009 30.622 hybrid contribution -1.589 -1.733 -0.141 2.355 sum 25.175 -16.579 -1.150 30.166 Atomic orbital electron populations 1.71023 1.07448 1.28868 1.52369 1.27800 0.96498 1.05331 0.97054 0.83156 0.74115 0.70765 0.77941 1.18504 1.23692 1.18475 1.20023 0.87893 0.93207 1.45501 0.97188 1.44351 1.05862 1.38488 1.45721 1.21744 0.97296 0.92367 0.90022 1.22011 0.97813 0.99055 0.97787 1.21670 0.97882 0.96411 0.98313 1.21376 0.89952 0.90566 0.95042 0.93272 1.45680 1.12889 1.13858 1.61869 1.18622 0.87581 0.82372 0.77687 1.90828 1.21964 1.76126 1.56961 1.20211 0.95076 0.94189 1.00450 1.22868 0.90424 1.03118 0.97629 1.23516 1.02124 0.86682 0.91673 1.67407 1.16800 1.17947 1.15556 1.18234 0.89381 0.90307 0.96667 1.19908 0.83488 0.94490 1.09386 1.22168 1.01405 0.92914 1.00353 1.22236 0.93237 1.01354 1.07543 1.25145 1.01208 0.83865 0.98595 1.84062 1.31209 1.28651 1.64916 1.22154 1.00835 0.93889 0.97452 1.21283 0.92229 0.90882 0.94043 0.94732 0.92763 0.92926 0.93904 0.87809 0.88847 0.88528 0.73935 0.79557 0.76536 0.81500 0.80003 0.74020 0.85644 0.96373 0.93476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -63.30 13.70 21.65 0.30 -63.01 16 2 C -0.07 -4.46 5.24 84.86 0.44 -4.01 16 3 Si 1.12 52.80 24.73 68.60 1.70 54.50 16 4 H -0.26 -10.82 6.56 99.48 0.65 -10.17 16 5 H -0.31 -14.96 7.11 99.48 0.71 -14.25 16 6 H -0.26 -11.09 6.80 99.48 0.68 -10.41 16 7 C -0.34 -20.52 9.88 84.03 0.83 -19.69 16 8 H 0.01 0.71 8.06 -2.91 -0.02 0.69 16 9 N -0.62 -30.26 2.72 -698.27 -1.90 -32.16 16 10 C 0.11 4.34 4.23 86.51 0.37 4.70 16 11 C -0.13 -3.76 6.10 30.82 0.19 -3.57 16 12 C -0.11 -2.45 5.35 30.62 0.16 -2.29 16 13 C 0.14 4.43 2.60 45.07 0.12 4.55 16 14 H 0.05 2.02 7.58 -2.38 -0.02 2.00 16 15 N -0.69 -16.78 5.04 -444.72 -2.24 -19.02 16 16 C 0.55 16.91 7.76 86.88 0.67 17.59 16 17 O -0.58 -24.88 16.10 -3.77 -0.06 -24.95 16 18 C -0.09 -2.10 5.90 -19.91 -0.12 -2.22 16 19 C -0.12 -1.58 9.61 22.68 0.22 -1.36 16 20 C 0.12 1.44 11.16 84.69 0.95 2.39 16 21 N -0.47 -9.15 10.02 -185.28 -1.86 -11.01 16 22 C 0.19 4.62 6.75 41.82 0.28 4.90 16 23 C -0.02 -0.56 7.03 24.25 0.17 -0.38 16 24 C -0.15 -2.85 10.58 22.39 0.24 -2.62 16 25 C -0.23 -3.31 10.89 22.12 0.24 -3.07 16 26 C -0.02 -0.31 12.08 67.03 0.81 0.50 16 27 O -0.19 -4.63 10.39 -5.83 -0.06 -4.69 16 28 C -0.12 -3.35 9.32 22.90 0.21 -3.13 16 29 C 0.14 5.94 6.09 86.36 0.53 6.46 16 30 H 0.24 16.55 8.73 -92.71 -0.81 15.74 16 31 H 0.05 1.89 7.10 -2.38 -0.02 1.88 16 32 H 0.05 2.32 4.76 -2.39 -0.01 2.31 16 33 H 0.04 1.46 8.14 -2.38 -0.02 1.44 16 34 H 0.10 2.27 8.14 -2.39 -0.02 2.25 16 35 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 36 H 0.10 1.72 8.14 -2.39 -0.02 1.70 16 37 H 0.42 5.72 6.74 -92.71 -0.62 5.10 16 38 H 0.19 0.75 6.52 -2.91 -0.02 0.73 16 39 H 0.22 0.54 8.06 -2.91 -0.02 0.52 16 40 H 0.17 2.72 8.06 -2.91 -0.02 2.70 16 41 H 0.18 1.48 8.06 -2.91 -0.02 1.46 16 42 H 0.24 1.58 8.06 -2.91 -0.02 1.56 16 43 H 0.13 4.00 7.58 -2.91 -0.02 3.97 16 44 H 0.02 0.88 7.93 -2.39 -0.02 0.86 16 45 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 Total: -1.00 -90.65 371.68 2.47 -88.18 By element: Atomic # 1 Polarization: 13.14 SS G_CDS: 0.28 Total: 13.42 kcal Atomic # 6 Polarization: -7.57 SS G_CDS: 6.31 Total: -1.27 kcal Atomic # 7 Polarization: -119.49 SS G_CDS: -5.70 Total: -125.19 kcal Atomic # 8 Polarization: -29.52 SS G_CDS: -0.12 Total: -29.64 kcal Atomic # 14 Polarization: 52.80 SS G_CDS: 1.70 Total: 54.50 kcal Total: -90.65 2.47 -88.18 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001007569578.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.917 kcal (2) G-P(sol) polarization free energy of solvation -90.646 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.272 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.469 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.177 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.741 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds