Wall clock time and date at job start Sat Apr 11 2020 06:17:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86797 * 120.00134 * 2 1 4 4 H 1.48498 * 109.47252 * 239.99965 * 3 2 1 5 5 H 1.48497 * 109.47180 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47438 * 119.99829 * 3 2 1 7 7 C 1.38810 * 120.00065 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00306 * 197.36987 * 7 2 1 9 9 N 1.36936 * 119.99813 * 17.36560 * 7 2 1 10 10 C 1.46929 * 120.63303 * 27.66300 * 9 7 2 11 11 C 1.53192 * 108.77546 * 126.40930 * 10 9 7 12 12 C 1.53046 * 109.31342 * 54.64061 * 11 10 9 13 13 C 1.53048 * 109.53500 * 298.63490 * 12 11 10 14 14 H 1.09000 * 109.52240 * 301.39593 * 13 12 11 15 15 N 1.46497 * 109.49207 * 181.31619 * 13 12 11 16 16 C 1.34783 * 119.99604 * 155.16484 * 15 13 12 17 17 O 1.21550 * 119.99830 * 359.97438 * 16 15 13 18 18 C 1.47862 * 119.99899 * 179.97438 * 16 15 13 19 19 C 1.39687 * 120.07399 * 359.97438 * 18 16 15 20 20 C 1.38053 * 120.14479 * 180.02562 * 19 18 16 21 21 C 1.38098 * 120.30233 * 359.71649 * 20 19 18 22 22 C 1.39647 * 120.14528 * 0.56094 * 21 20 19 23 23 C 1.47846 * 120.07580 * 179.71883 * 22 21 20 24 24 C 1.35770 * 126.58072 * 359.69812 * 23 22 21 25 25 N 1.34141 * 107.51383 * 180.02562 * 24 23 22 26 26 C 1.30363 * 108.90551 * 359.97438 * 25 24 23 27 27 O 1.34006 * 109.02996 * 359.97438 * 26 25 24 28 28 C 1.39313 * 120.07795 * 179.97438 * 18 16 15 29 29 C 1.46934 * 120.63330 * 207.68448 * 9 7 2 30 30 H 0.97001 * 119.99927 * 359.97438 * 1 2 3 31 31 H 1.08990 * 109.58854 * 246.20139 * 10 9 7 32 32 H 1.09002 * 109.58287 * 6.62597 * 10 9 7 33 33 H 1.09000 * 109.49845 * 174.58863 * 11 10 9 34 34 H 1.08999 * 109.50067 * 294.68653 * 11 10 9 35 35 H 1.08999 * 109.45861 * 178.61418 * 12 11 10 36 36 H 1.08995 * 109.45734 * 58.65040 * 12 11 10 37 37 H 0.96996 * 120.00566 * 335.15861 * 15 13 12 38 38 H 1.07998 * 119.92585 * 359.97438 * 19 18 16 39 39 H 1.08000 * 119.84896 * 180.02562 * 20 19 18 40 40 H 1.08000 * 119.93182 * 180.28266 * 21 20 19 41 41 H 1.07993 * 126.24262 * 0.02562 * 24 23 22 42 42 H 1.07997 * 125.48203 * 179.97438 * 26 25 24 43 43 H 1.08001 * 120.14036 * 359.95698 * 28 18 16 44 44 H 1.08994 * 109.58384 * 113.80132 * 29 9 7 45 45 H 1.08999 * 109.58384 * 353.37775 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2853 2.7464 -0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0533 -1.2234 0.2798 9 7 1.3724 -2.3611 -0.3529 10 6 0.2278 -2.3349 -1.2737 11 6 0.5006 -3.3053 -2.4273 12 6 0.8184 -4.6904 -1.8591 13 6 2.0742 -4.6103 -0.9880 14 1 2.9084 -4.2408 -1.5844 15 7 2.3956 -5.9425 -0.4701 16 6 3.6621 -6.2414 -0.1188 17 8 4.5375 -5.4058 -0.2321 18 6 3.9865 -7.5857 0.4044 19 6 2.9815 -8.5470 0.5358 20 6 3.2826 -9.8024 1.0247 21 6 4.5786 -10.1189 1.3815 22 6 5.5919 -9.1656 1.2607 23 6 6.9777 -9.5040 1.6489 24 6 7.4128 -10.6921 2.1415 25 7 8.7311 -10.5791 2.3624 26 6 9.1143 -9.3792 2.0263 27 8 8.0545 -8.6907 1.5808 28 6 5.2950 -7.8966 0.7675 29 6 1.8193 -3.6547 0.1818 30 1 -0.4850 0.8401 0.0004 31 1 -0.6743 -2.6411 -0.7442 32 1 0.0985 -1.3266 -1.6672 33 1 -0.3802 -3.3676 -3.0663 34 1 1.3492 -2.9478 -3.0105 35 1 0.9888 -5.3886 -2.6786 36 1 -0.0206 -5.0366 -1.2557 37 1 1.6971 -6.6094 -0.3799 38 1 1.9666 -8.3072 0.2551 39 1 2.5019 -10.5421 1.1239 40 1 4.8083 -11.1043 1.7589 41 1 6.8079 -11.5682 2.3225 42 1 10.1235 -9.0011 2.0958 43 1 6.0759 -7.1572 0.6673 44 1 1.0469 -4.0685 0.8300 45 1 2.7400 -3.5173 0.7488 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001009043441.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:59 Heat of formation + Delta-G solvation = 37.486359 kcal Electronic energy + Delta-G solvation = -28426.913173 eV Core-core repulsion = 24411.626359 eV Total energy + Delta-G solvation = -4015.286814 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -43.63314 -40.32755 -38.73925 -37.25450 -35.13636 -34.45556 -33.17684 -32.30805 -31.49385 -30.47177 -29.28761 -28.36119 -25.29366 -24.61371 -23.98119 -22.87226 -22.14042 -21.73861 -21.63608 -20.17586 -19.49029 -18.50748 -17.41220 -16.92455 -16.80940 -16.46433 -15.98470 -15.57388 -15.10238 -14.88104 -14.68261 -14.39713 -14.19404 -14.03525 -13.76095 -13.54158 -13.51685 -13.19897 -12.92321 -12.43254 -12.41880 -12.12927 -11.84466 -11.76822 -11.69601 -11.10747 -10.99372 -10.90708 -10.78368 -10.33238 -10.28086 -10.25765 -10.03722 -9.91352 -9.66021 -9.59390 -9.37763 -8.86783 -8.51906 -8.40097 -6.67904 -5.78226 -3.20211 0.16918 0.68783 1.50895 2.29331 2.32225 2.85844 3.20291 3.41722 3.46119 3.49433 3.64727 3.83986 4.18522 4.43021 4.47362 4.53496 4.59161 4.72975 4.76548 4.97144 5.15158 5.26046 5.32770 5.37698 5.46319 5.51871 5.56472 5.60444 5.68809 5.88490 5.90894 5.95134 5.98790 6.05561 6.12798 6.21381 6.36580 6.50337 6.59276 6.62793 6.67354 6.81955 6.96477 7.28787 7.34854 7.63822 7.65487 7.83354 8.32935 8.46495 9.22352 9.84540 10.39999 11.30551 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.016063 B = 0.002296 C = 0.002071 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1742.676877 B =12191.747983 C =13516.638611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.002 3.998 3 Si 0.904 3.096 4 H -0.283 1.283 5 H -0.290 1.290 6 H -0.282 1.282 7 C -0.251 4.251 8 H 0.066 0.934 9 N -0.587 5.587 10 C 0.167 3.833 11 C -0.140 4.140 12 C -0.115 4.115 13 C 0.125 3.875 14 H 0.088 0.912 15 N -0.715 5.715 16 C 0.552 3.448 17 O -0.528 6.528 18 C -0.121 4.121 19 C -0.076 4.076 20 C -0.120 4.120 21 C -0.075 4.075 22 C -0.028 4.028 23 C 0.003 3.997 24 C -0.025 4.025 25 N -0.488 5.488 26 C 0.175 3.825 27 O -0.195 6.195 28 C -0.041 4.041 29 C 0.142 3.858 30 H 0.254 0.746 31 H 0.019 0.981 32 H 0.090 0.910 33 H 0.055 0.945 34 H 0.057 0.943 35 H 0.051 0.949 36 H 0.059 0.941 37 H 0.394 0.606 38 H 0.133 0.867 39 H 0.138 0.862 40 H 0.133 0.867 41 H 0.187 0.813 42 H 0.252 0.748 43 H 0.143 0.857 44 H 0.018 0.982 45 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.314 -24.027 0.674 25.125 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.196 4.196 3 Si 0.733 3.267 4 H -0.210 1.210 5 H -0.216 1.216 6 H -0.208 1.208 7 C -0.381 4.381 8 H 0.084 0.916 9 N -0.310 5.310 10 C 0.041 3.959 11 C -0.179 4.179 12 C -0.153 4.153 13 C 0.020 3.980 14 H 0.106 0.894 15 N -0.366 5.366 16 C 0.338 3.662 17 O -0.405 6.405 18 C -0.124 4.124 19 C -0.095 4.095 20 C -0.138 4.138 21 C -0.094 4.094 22 C -0.029 4.029 23 C -0.050 4.050 24 C -0.165 4.165 25 N -0.216 5.216 26 C -0.050 4.050 27 O -0.081 6.081 28 C -0.060 4.060 29 C 0.014 3.986 30 H 0.064 0.936 31 H 0.037 0.963 32 H 0.108 0.892 33 H 0.073 0.927 34 H 0.076 0.924 35 H 0.070 0.930 36 H 0.078 0.922 37 H 0.228 0.772 38 H 0.151 0.849 39 H 0.156 0.844 40 H 0.151 0.849 41 H 0.204 0.796 42 H 0.268 0.732 43 H 0.161 0.839 44 H 0.035 0.965 45 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 8.240 -23.625 0.819 25.034 hybrid contribution -0.287 0.976 -0.126 1.025 sum 7.953 -22.649 0.693 24.015 Atomic orbital electron populations 1.70030 1.05228 1.25615 1.54008 1.25020 0.95308 0.98401 1.00886 0.86343 0.78901 0.83154 0.78258 1.20966 1.21637 1.20839 1.19183 0.92820 0.84680 1.41378 0.91588 1.43999 1.35615 1.01022 1.50377 1.20853 0.88561 0.98614 0.87869 1.22184 1.00487 0.95120 1.00156 1.21684 0.96655 0.98707 0.98251 1.21808 0.97958 0.80940 0.97270 0.89417 1.46068 1.08893 1.16027 1.65602 1.18155 0.83090 0.86751 0.78236 1.90822 1.46954 1.49239 1.53490 1.20034 0.94241 0.94800 1.03356 1.21515 0.98936 0.92891 0.96168 1.20998 0.96254 0.96832 0.99738 1.21190 0.91926 0.98520 0.97717 1.17514 0.87437 0.94876 1.03030 1.21404 0.87387 0.90353 1.05850 1.23291 0.91190 0.98387 1.03611 1.70364 1.12217 1.18981 1.20008 1.28198 0.93396 0.86599 0.96784 1.84532 1.16853 1.42019 1.64648 1.21410 0.96349 0.95171 0.93033 1.21181 0.97982 0.86843 0.92551 0.93603 0.96277 0.89205 0.92652 0.92379 0.93037 0.92202 0.77174 0.84936 0.84434 0.84867 0.79633 0.73189 0.83915 0.96452 0.92360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.28 11.19 55.49 0.62 -25.66 16 2 C 0.00 0.06 4.91 -17.43 -0.09 -0.02 16 3 Si 0.90 22.15 29.59 -169.99 -5.03 17.12 16 4 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 5 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 6 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 7 C -0.25 -7.09 9.59 -15.06 -0.14 -7.23 16 8 H 0.07 1.88 7.89 -52.49 -0.41 1.46 16 9 N -0.59 -14.93 3.00 -172.32 -0.52 -15.45 16 10 C 0.17 3.91 5.31 -3.71 -0.02 3.89 16 11 C -0.14 -2.56 6.08 -26.61 -0.16 -2.72 16 12 C -0.11 -1.80 5.35 -26.68 -0.14 -1.94 16 13 C 0.13 2.22 2.60 -67.81 -0.18 2.04 16 14 H 0.09 1.79 7.58 -51.93 -0.39 1.40 16 15 N -0.72 -10.06 5.03 -54.63 -0.27 -10.34 16 16 C 0.55 8.55 7.74 -12.32 -0.10 8.45 16 17 O -0.53 -10.52 16.00 5.32 0.09 -10.44 16 18 C -0.12 -1.45 5.87 -105.02 -0.62 -2.07 16 19 C -0.08 -0.65 9.54 -39.11 -0.37 -1.02 16 20 C -0.12 -0.80 10.02 -39.70 -0.40 -1.20 16 21 C -0.08 -0.54 9.57 -39.11 -0.37 -0.92 16 22 C -0.03 -0.28 5.87 -105.03 -0.62 -0.89 16 23 C 0.00 0.03 7.07 -36.54 -0.26 -0.22 16 24 C -0.03 -0.23 11.29 -17.43 -0.20 -0.42 16 25 N -0.49 -4.85 11.27 -14.68 -0.17 -5.01 16 26 C 0.18 1.41 13.22 52.14 0.69 2.10 16 27 O -0.19 -2.04 10.58 4.23 0.04 -1.99 16 28 C -0.04 -0.49 9.27 -38.77 -0.36 -0.85 16 29 C 0.14 3.09 6.09 -3.71 -0.02 3.07 16 30 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 31 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.09 2.37 6.04 -51.93 -0.31 2.05 16 33 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 34 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 35 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 37 H 0.39 4.10 6.63 -40.82 -0.27 3.83 16 38 H 0.13 0.82 6.39 -52.49 -0.34 0.48 16 39 H 0.14 0.52 8.06 -52.49 -0.42 0.09 16 40 H 0.13 0.58 7.02 -52.49 -0.37 0.21 16 41 H 0.19 1.09 7.29 -52.49 -0.38 0.71 16 42 H 0.25 0.77 8.06 -52.49 -0.42 0.34 16 43 H 0.14 1.92 7.53 -52.49 -0.40 1.53 16 44 H 0.02 0.38 8.14 -51.93 -0.42 -0.05 16 45 H 0.06 1.37 7.93 -51.93 -0.41 0.96 16 LS Contribution 374.93 15.07 5.65 5.65 Total: -1.00 -35.25 374.93 -8.74 -43.99 By element: Atomic # 1 Polarization: 7.89 SS G_CDS: -5.80 Total: 2.09 kcal Atomic # 6 Polarization: 3.39 SS G_CDS: -3.35 Total: 0.04 kcal Atomic # 7 Polarization: -56.12 SS G_CDS: -0.34 Total: -56.46 kcal Atomic # 8 Polarization: -12.56 SS G_CDS: 0.13 Total: -12.43 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.03 Total: 17.12 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -35.25 -8.74 -43.99 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001009043441.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.479 kcal (2) G-P(sol) polarization free energy of solvation -35.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.225 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.992 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds