Wall clock time and date at job start Sat Apr 11 2020 06:18:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86798 * 119.99977 * 2 1 4 4 H 1.48497 * 109.46812 * 270.00210 * 3 2 1 5 5 H 1.48507 * 109.46940 * 29.99858 * 3 2 1 6 6 H 1.48497 * 109.47456 * 149.99774 * 3 2 1 7 7 C 1.38813 * 119.99784 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99438 * 197.35250 * 7 2 1 9 9 N 1.36936 * 120.00195 * 17.36157 * 7 2 1 10 10 C 1.46931 * 120.63067 * 27.67060 * 9 7 2 11 11 C 1.53187 * 108.77328 * 126.41445 * 10 9 7 12 12 C 1.53036 * 109.34322 * 54.61625 * 11 10 9 13 13 C 1.53035 * 109.54208 * 298.68633 * 12 11 10 14 14 H 1.09008 * 109.46838 * 301.36435 * 13 12 11 15 15 N 1.46494 * 109.52558 * 181.29577 * 13 12 11 16 16 C 1.34783 * 119.99847 * 155.11155 * 15 13 12 17 17 O 1.21605 * 120.00315 * 359.97438 * 16 15 13 18 18 C 1.47464 * 119.99816 * 180.02562 * 16 15 13 19 19 C 1.36237 * 126.36444 * 179.71714 * 18 16 15 20 20 O 1.34274 * 107.11898 * 179.89457 * 19 18 16 21 21 C 1.34477 * 108.17242 * 0.36014 * 20 19 18 22 22 C 1.47879 * 125.48586 * 179.78933 * 21 20 19 23 23 C 1.39544 * 120.13572 * 179.69832 * 22 21 20 24 24 C 1.37969 * 119.85202 * 179.78851 * 23 22 21 25 25 C 1.38348 * 120.14199 * 0.47249 * 24 23 22 26 26 C 1.38348 * 120.28965 * 359.78334 * 25 24 23 27 27 C 1.37970 * 120.14338 * 359.97438 * 26 25 24 28 28 N 1.30892 * 109.01918 * 359.77084 * 21 20 19 29 29 C 1.46924 * 120.62987 * 207.68989 * 9 7 2 30 30 H 0.97006 * 120.00403 * 0.02562 * 1 2 3 31 31 H 1.09001 * 109.58722 * 6.62827 * 10 9 7 32 32 H 1.09000 * 109.69982 * 246.27127 * 10 9 7 33 33 H 1.09003 * 109.49294 * 174.58737 * 11 10 9 34 34 H 1.09000 * 109.49839 * 294.64876 * 11 10 9 35 35 H 1.09004 * 109.45659 * 58.67099 * 12 11 10 36 36 H 1.09004 * 109.46253 * 178.62448 * 12 11 10 37 37 H 0.97001 * 120.00015 * 335.11127 * 15 13 12 38 38 H 1.07997 * 126.43738 * 0.02562 * 19 18 16 39 39 H 1.08005 * 120.07694 * 0.02562 * 23 22 21 40 40 H 1.08000 * 119.93228 * 180.20640 * 24 23 22 41 41 H 1.08006 * 119.85781 * 179.76396 * 25 24 23 42 42 H 1.07997 * 119.93222 * 179.97438 * 26 25 24 43 43 H 1.07996 * 120.07787 * 179.97438 * 27 26 25 44 44 H 1.08995 * 109.58607 * 353.37922 * 29 9 7 45 45 H 1.09010 * 109.58203 * 113.79897 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4976 2.0464 -1.4001 5 1 1.4475 2.6527 0.7000 6 1 3.5477 1.4403 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 3.0533 -1.2233 0.2795 9 7 1.3723 -2.3612 -0.3528 10 6 0.2277 -2.3350 -1.2737 11 6 0.5005 -3.3056 -2.4270 12 6 0.8189 -4.6906 -1.8594 13 6 2.0741 -4.6104 -0.9876 14 1 2.9079 -4.2407 -1.5844 15 7 2.3962 -5.9423 -0.4694 16 6 3.6629 -6.2406 -0.1185 17 8 4.5385 -5.4044 -0.2325 18 6 3.9873 -7.5814 0.4026 19 6 5.2172 -8.0221 0.7889 20 8 5.0712 -9.2925 1.1983 21 6 3.7773 -9.6318 1.0596 22 6 3.1947 -10.9492 1.3941 23 6 1.8305 -11.1787 1.2109 24 6 1.2938 -12.4114 1.5208 25 6 2.1033 -13.4155 2.0213 26 6 3.4555 -13.1927 2.2103 27 6 4.0056 -11.9661 1.8997 28 7 3.1168 -8.6080 0.5811 29 6 1.8192 -3.6546 0.1821 30 1 -0.4851 0.8401 -0.0004 31 1 0.0985 -1.3268 -1.6674 32 1 -0.6758 -2.6397 -0.7456 33 1 -0.3803 -3.3679 -3.0661 34 1 1.3488 -2.9479 -3.0106 35 1 -0.0201 -5.0374 -1.2561 36 1 0.9894 -5.3887 -2.6791 37 1 1.6979 -6.6094 -0.3789 38 1 6.1363 -7.4553 0.7714 39 1 1.1968 -10.3945 0.8238 40 1 0.2388 -12.5916 1.3764 41 1 1.6776 -14.3776 2.2660 42 1 4.0820 -13.9805 2.6017 43 1 5.0613 -11.7931 2.0479 44 1 2.7399 -3.5171 0.7490 45 1 1.0467 -4.0684 0.8304 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001009251064.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:04 Heat of formation + Delta-G solvation = 34.302231 kcal Electronic energy + Delta-G solvation = -28362.016055 eV Core-core repulsion = 24346.591167 eV Total energy + Delta-G solvation = -4015.424888 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -43.62340 -39.58536 -39.38725 -37.31599 -35.14517 -34.27238 -32.77379 -32.32474 -31.42850 -30.43993 -29.55783 -28.60918 -25.25816 -24.63983 -24.15139 -22.98186 -22.10423 -21.80909 -21.25388 -20.22119 -19.43816 -18.41119 -17.21167 -17.06697 -16.74272 -16.48314 -16.03831 -15.55142 -15.25270 -14.78421 -14.67282 -14.31645 -13.99770 -13.90204 -13.83574 -13.59941 -13.40568 -13.35454 -13.08126 -12.37741 -12.36013 -11.95197 -11.80277 -11.63456 -11.59502 -11.08768 -11.06295 -10.86963 -10.78846 -10.23523 -10.19499 -10.16052 -10.12160 -9.87929 -9.63258 -9.60152 -9.44836 -8.84509 -8.65186 -8.37216 -6.64957 -5.75374 -3.17490 0.24187 0.91692 1.13501 2.03620 2.20257 3.15357 3.29799 3.42379 3.44818 3.48697 3.50972 3.56735 4.39319 4.47005 4.53198 4.58676 4.64497 4.74077 4.92644 5.02329 5.15410 5.31122 5.36215 5.40540 5.42829 5.54947 5.56300 5.63689 5.69274 5.76577 5.94463 5.97605 6.02495 6.10080 6.17691 6.27824 6.40859 6.55332 6.63400 6.67639 6.71674 6.86123 6.99807 7.18165 7.38876 7.67784 7.75649 7.86097 8.34516 8.49205 9.25068 9.87319 10.43145 11.33324 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.020569 B = 0.002141 C = 0.002037 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1360.930657 B =13076.392335 C =13739.854609 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.001 3.999 3 Si 0.904 3.096 4 H -0.287 1.287 5 H -0.292 1.292 6 H -0.278 1.278 7 C -0.249 4.249 8 H 0.067 0.933 9 N -0.587 5.587 10 C 0.167 3.833 11 C -0.139 4.139 12 C -0.115 4.115 13 C 0.125 3.875 14 H 0.088 0.912 15 N -0.702 5.702 16 C 0.597 3.403 17 O -0.531 6.531 18 C -0.059 4.059 19 C 0.014 3.986 20 O -0.192 6.192 21 C 0.234 3.766 22 C -0.018 4.018 23 C -0.069 4.069 24 C -0.121 4.121 25 C -0.101 4.101 26 C -0.122 4.122 27 C -0.089 4.089 28 N -0.446 5.446 29 C 0.142 3.858 30 H 0.253 0.747 31 H 0.090 0.910 32 H 0.019 0.981 33 H 0.055 0.945 34 H 0.057 0.943 35 H 0.060 0.940 36 H 0.051 0.949 37 H 0.403 0.597 38 H 0.235 0.765 39 H 0.140 0.860 40 H 0.133 0.867 41 H 0.128 0.872 42 H 0.130 0.870 43 H 0.131 0.869 44 H 0.058 0.942 45 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.573 -28.316 1.579 28.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.197 4.197 3 Si 0.734 3.266 4 H -0.214 1.214 5 H -0.218 1.218 6 H -0.204 1.204 7 C -0.379 4.379 8 H 0.085 0.915 9 N -0.310 5.310 10 C 0.041 3.959 11 C -0.179 4.179 12 C -0.153 4.153 13 C 0.020 3.980 14 H 0.106 0.894 15 N -0.351 5.351 16 C 0.381 3.619 17 O -0.408 6.408 18 C -0.181 4.181 19 C -0.060 4.060 20 O -0.077 6.077 21 C 0.028 3.972 22 C -0.019 4.019 23 C -0.088 4.088 24 C -0.139 4.139 25 C -0.120 4.120 26 C -0.140 4.140 27 C -0.109 4.109 28 N -0.176 5.176 29 C 0.014 3.986 30 H 0.063 0.937 31 H 0.108 0.892 32 H 0.037 0.963 33 H 0.073 0.927 34 H 0.076 0.924 35 H 0.079 0.921 36 H 0.070 0.930 37 H 0.238 0.762 38 H 0.251 0.749 39 H 0.158 0.842 40 H 0.151 0.849 41 H 0.146 0.854 42 H 0.148 0.852 43 H 0.149 0.851 44 H 0.077 0.923 45 H 0.036 0.964 Dipole moment (debyes) X Y Z Total from point charges 4.450 -27.501 1.382 27.893 hybrid contribution 0.831 0.587 0.218 1.041 sum 5.282 -26.914 1.600 27.474 Atomic orbital electron populations 1.70044 1.05224 1.25464 1.54130 1.25029 0.95316 0.98406 1.00974 0.86259 0.79156 0.83510 0.77714 1.21412 1.21811 1.20376 1.19239 0.92830 0.84652 1.41159 0.91500 1.44006 1.35600 1.01021 1.50393 1.20850 0.88582 0.98589 0.87891 1.22178 1.00471 0.95109 1.00124 1.21674 0.96692 0.98630 0.98277 1.21832 0.98035 0.80858 0.97289 0.89397 1.45954 1.08837 1.16059 1.64254 1.16712 0.83495 0.83844 0.77884 1.90861 1.47301 1.47925 1.54682 1.21972 0.90803 0.96275 1.09031 1.25418 1.01258 0.81512 0.97789 1.84414 1.30324 1.28255 1.64744 1.23744 0.77812 0.95581 1.00060 1.17288 0.93688 0.87009 1.03954 1.21247 0.92968 0.97754 0.96861 1.21159 1.00518 0.92738 0.99458 1.21400 0.93835 0.99358 0.97367 1.21088 0.95493 0.96825 1.00598 1.21255 1.00007 0.92529 0.97063 1.70942 1.32425 0.98651 1.15560 1.21186 0.98033 0.86800 0.92542 0.93676 0.89221 0.96261 0.92653 0.92394 0.92131 0.93004 0.76212 0.74902 0.84168 0.84923 0.85418 0.85175 0.85058 0.92340 0.96363 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.56 11.19 55.49 0.62 -25.94 16 2 C 0.00 0.03 4.91 -17.43 -0.09 -0.06 16 3 Si 0.90 22.29 29.59 -169.99 -5.03 17.26 16 4 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 5 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 6 H -0.28 -6.79 7.11 56.52 0.40 -6.38 16 7 C -0.25 -7.09 9.59 -15.06 -0.14 -7.24 16 8 H 0.07 1.92 7.89 -52.49 -0.41 1.50 16 9 N -0.59 -15.20 3.00 -172.32 -0.52 -15.72 16 10 C 0.17 3.99 5.31 -3.71 -0.02 3.97 16 11 C -0.14 -2.64 6.08 -26.62 -0.16 -2.80 16 12 C -0.11 -1.92 5.36 -26.69 -0.14 -2.06 16 13 C 0.12 2.33 2.60 -67.82 -0.18 2.16 16 14 H 0.09 1.84 7.58 -51.92 -0.39 1.44 16 15 N -0.70 -11.28 5.08 -54.76 -0.28 -11.56 16 16 C 0.60 9.99 7.78 -12.50 -0.10 9.89 16 17 O -0.53 -10.52 16.55 5.27 0.09 -10.43 16 18 C -0.06 -0.83 6.99 -83.08 -0.58 -1.41 16 19 C 0.01 0.16 11.94 30.01 0.36 0.52 16 20 O -0.19 -2.09 10.45 5.31 0.06 -2.04 16 21 C 0.23 2.69 7.88 -14.01 -0.11 2.58 16 22 C -0.02 -0.17 5.87 -104.98 -0.62 -0.79 16 23 C -0.07 -0.57 9.68 -39.19 -0.38 -0.95 16 24 C -0.12 -0.76 10.03 -39.64 -0.40 -1.16 16 25 C -0.10 -0.55 10.04 -39.50 -0.40 -0.95 16 26 C -0.12 -0.70 10.03 -39.64 -0.40 -1.10 16 27 C -0.09 -0.66 9.71 -39.19 -0.38 -1.04 16 28 N -0.45 -5.86 10.65 -8.26 -0.09 -5.94 16 29 C 0.14 3.19 6.09 -3.71 -0.02 3.17 16 30 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 31 H 0.09 2.40 6.04 -51.93 -0.31 2.09 16 32 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 34 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 35 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 36 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.40 5.66 8.33 -40.82 -0.34 5.32 16 38 H 0.23 1.95 8.06 -52.49 -0.42 1.53 16 39 H 0.14 1.17 7.82 -52.48 -0.41 0.76 16 40 H 0.13 0.56 8.06 -52.49 -0.42 0.14 16 41 H 0.13 0.39 8.06 -52.48 -0.42 -0.03 16 42 H 0.13 0.45 8.06 -52.49 -0.42 0.02 16 43 H 0.13 0.82 7.89 -52.49 -0.41 0.40 16 44 H 0.06 1.40 7.93 -51.93 -0.41 0.99 16 45 H 0.02 0.41 8.14 -51.92 -0.42 -0.01 16 LS Contribution 380.58 15.07 5.74 5.74 Total: -1.00 -33.34 380.58 -9.23 -42.57 By element: Atomic # 1 Polarization: 9.38 SS G_CDS: -6.06 Total: 3.32 kcal Atomic # 6 Polarization: 6.49 SS G_CDS: -3.75 Total: 2.74 kcal Atomic # 7 Polarization: -58.90 SS G_CDS: -0.26 Total: -59.16 kcal Atomic # 8 Polarization: -12.61 SS G_CDS: 0.14 Total: -12.47 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -5.03 Total: 17.26 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -33.34 -9.23 -42.57 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001009251064.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.868 kcal (2) G-P(sol) polarization free energy of solvation -33.341 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.527 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.225 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.566 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds