Wall clock time and date at job start Sat Apr 11 2020 06:18:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86803 * 120.00144 * 2 1 4 4 H 1.48488 * 109.47039 * 272.90130 * 3 2 1 5 5 H 1.48500 * 109.46750 * 32.90362 * 3 2 1 6 6 H 1.48497 * 109.46797 * 152.89756 * 3 2 1 7 7 C 1.38812 * 119.99998 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99680 * 339.36577 * 7 2 1 9 9 N 1.36937 * 120.00019 * 159.36224 * 7 2 1 10 10 C 1.46921 * 120.63148 * 332.60116 * 9 7 2 11 11 C 1.53196 * 108.77929 * 233.63363 * 10 9 7 12 12 C 1.53042 * 109.30636 * 305.36536 * 11 10 9 13 13 C 1.53037 * 109.53939 * 61.36530 * 12 11 10 14 14 H 1.09000 * 109.52531 * 58.60353 * 13 12 11 15 15 N 1.46502 * 109.49641 * 178.67704 * 13 12 11 16 16 C 1.34776 * 120.00321 * 204.83348 * 15 13 12 17 17 O 1.21614 * 119.99587 * 0.02562 * 16 15 13 18 18 C 1.47460 * 120.00121 * 180.02562 * 16 15 13 19 19 C 1.36231 * 126.36271 * 179.97438 * 18 16 15 20 20 O 1.34274 * 107.12264 * 179.79179 * 19 18 16 21 21 C 1.34484 * 108.16918 * 0.38856 * 20 19 18 22 22 C 1.47877 * 125.49152 * 179.86716 * 21 20 19 23 23 C 1.39547 * 120.13900 * 179.97438 * 22 21 20 24 24 C 1.37968 * 119.84975 * 180.25170 * 23 22 21 25 25 C 1.38350 * 120.14496 * 359.45399 * 24 23 22 26 26 C 1.38355 * 120.28602 * 0.27234 * 25 24 23 27 27 C 1.37964 * 120.14156 * 0.02562 * 26 25 24 28 28 N 1.30896 * 109.01438 * 359.60127 * 21 20 19 29 29 C 1.46925 * 120.62883 * 152.62857 * 9 7 2 30 30 H 0.97006 * 120.00557 * 359.97438 * 1 2 3 31 31 H 1.09006 * 109.58857 * 353.41755 * 10 9 7 32 32 H 1.09000 * 109.58748 * 113.69850 * 10 9 7 33 33 H 1.08994 * 109.49518 * 65.31475 * 11 10 9 34 34 H 1.08997 * 109.50012 * 185.41662 * 11 10 9 35 35 H 1.08996 * 109.45902 * 301.34251 * 12 11 10 36 36 H 1.09001 * 109.45468 * 181.38706 * 12 11 10 37 37 H 0.97006 * 119.99792 * 24.84730 * 15 13 12 38 38 H 1.07995 * 126.44355 * 0.03556 * 19 18 16 39 39 H 1.07993 * 120.07691 * 0.02562 * 23 22 21 40 40 H 1.07995 * 119.92739 * 179.73041 * 24 23 22 41 41 H 1.07996 * 119.86057 * 180.25800 * 25 24 23 42 42 H 1.07995 * 119.92701 * 180.02562 * 26 25 24 43 43 H 1.08003 * 120.07048 * 179.97438 * 27 26 25 44 44 H 1.09000 * 109.59058 * 6.57912 * 29 9 7 45 45 H 1.09008 * 109.58454 * 246.15492 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4363 2.0818 -1.3982 5 1 1.4796 2.6341 0.7606 6 1 3.5770 1.4231 0.6379 7 6 2.0102 -1.2021 0.0005 8 1 1.5221 -2.1073 0.3306 9 7 3.3136 -1.2404 -0.4174 10 6 3.8174 -0.2598 -1.3886 11 6 4.4617 -1.0104 -2.5584 12 6 5.5283 -1.9668 -2.0199 13 6 4.8744 -2.9914 -1.0900 14 1 4.1077 -3.5414 -1.6356 15 7 5.8909 -3.9256 -0.5999 16 6 5.5332 -5.1621 -0.2004 17 8 4.3666 -5.5024 -0.2471 18 6 6.5563 -6.1023 0.2933 19 6 6.3410 -7.3754 0.7277 20 8 7.5341 -7.8795 1.0817 21 6 8.4667 -6.9322 0.8779 22 6 9.9137 -7.0806 1.1443 23 6 10.7852 -6.0207 0.8903 24 6 12.1348 -6.1674 1.1363 25 6 12.6231 -7.3581 1.6442 26 6 11.7635 -8.4108 1.9035 27 6 10.4126 -8.2791 1.6562 28 7 7.8879 -5.8597 0.4002 29 6 4.2348 -2.2633 0.0964 30 1 -0.4851 0.8400 0.0004 31 1 2.9909 0.3487 -1.7558 32 1 4.5583 0.3808 -0.9102 33 1 3.6988 -1.5785 -3.0904 34 1 4.9243 -0.2955 -3.2388 35 1 6.2777 -1.4007 -1.4669 36 1 6.0054 -2.4842 -2.8522 37 1 6.8215 -3.6542 -0.5629 38 1 5.3900 -7.8850 0.7744 39 1 10.4046 -5.0890 0.4987 40 1 12.8110 -5.3495 0.9360 41 1 13.6798 -7.4665 1.8388 42 1 12.1508 -9.3375 2.3003 43 1 9.7427 -9.1017 1.8587 44 1 3.6837 -2.9767 0.7090 45 1 5.0116 -1.7877 0.6952 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001009251065.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:07 Heat of formation + Delta-G solvation = 14.906073 kcal Electronic energy + Delta-G solvation = -28440.365342 eV Core-core repulsion = 24424.099373 eV Total energy + Delta-G solvation = -4016.265969 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -44.54476 -41.00252 -39.95480 -39.19239 -36.19869 -35.95899 -34.28563 -33.43102 -32.71353 -31.92711 -30.98051 -30.08176 -27.25179 -25.89986 -24.91685 -23.97590 -23.76360 -23.18070 -22.18016 -21.53407 -21.16194 -19.49291 -18.80636 -18.04724 -17.98825 -17.48810 -17.31311 -17.00846 -16.49867 -16.32509 -15.88901 -15.67867 -15.42062 -15.32464 -14.91354 -14.76100 -14.63194 -14.54034 -14.36581 -14.11862 -13.90870 -13.75467 -13.33519 -12.85633 -12.68123 -12.54368 -12.46149 -12.41662 -12.16106 -11.93771 -11.86623 -11.73251 -11.54556 -11.39946 -11.31505 -10.91090 -10.80702 -10.26591 -9.94057 -9.40505 -8.95655 -8.18581 -5.52787 -0.44126 0.16436 0.43030 1.18925 1.29210 1.34657 1.41260 1.51546 1.90275 2.13778 2.40212 2.60929 2.84924 3.03780 3.30956 3.59461 3.63961 3.79990 3.98984 3.99497 4.03037 4.07166 4.19096 4.29205 4.34034 4.37931 4.43628 4.48280 4.60828 4.62131 4.66747 4.72900 4.89669 4.93431 4.96826 5.00634 5.05001 5.09860 5.16135 5.29963 5.38547 5.47810 5.48393 5.54813 5.82638 5.94941 6.09132 6.17754 6.49610 6.87027 7.05169 7.57643 7.95895 9.01538 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.019910 B = 0.002223 C = 0.002114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1406.016340 B =12590.572545 C =13241.654324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.958 5.958 2 C -0.037 4.037 3 Si 0.958 3.042 4 H -0.265 1.265 5 H -0.310 1.310 6 H -0.259 1.259 7 C -0.256 4.256 8 H 0.038 0.962 9 N -0.616 5.616 10 C 0.112 3.888 11 C -0.125 4.125 12 C -0.106 4.106 13 C 0.137 3.863 14 H 0.062 0.938 15 N -0.692 5.692 16 C 0.597 3.403 17 O -0.569 6.569 18 C -0.089 4.089 19 C 0.033 3.967 20 O -0.187 6.187 21 C 0.240 3.760 22 C -0.047 4.047 23 C -0.081 4.081 24 C -0.124 4.124 25 C -0.094 4.094 26 C -0.122 4.122 27 C -0.094 4.094 28 N -0.462 5.462 29 C 0.145 3.855 30 H 0.263 0.737 31 H 0.052 0.948 32 H 0.043 0.957 33 H 0.052 0.948 34 H 0.100 0.900 35 H 0.085 0.915 36 H 0.090 0.910 37 H 0.418 0.582 38 H 0.259 0.741 39 H 0.133 0.867 40 H 0.154 0.846 41 H 0.157 0.843 42 H 0.157 0.843 43 H 0.138 0.862 44 H 0.033 0.967 45 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 31.853 -16.239 0.352 35.755 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.603 5.603 2 C -0.232 4.232 3 Si 0.785 3.215 4 H -0.192 1.192 5 H -0.239 1.239 6 H -0.184 1.184 7 C -0.385 4.385 8 H 0.056 0.944 9 N -0.341 5.341 10 C -0.012 4.012 11 C -0.164 4.164 12 C -0.144 4.144 13 C 0.031 3.969 14 H 0.080 0.920 15 N -0.342 5.342 16 C 0.383 3.617 17 O -0.449 6.449 18 C -0.209 4.209 19 C -0.042 4.042 20 O -0.072 6.072 21 C 0.034 3.966 22 C -0.048 4.048 23 C -0.101 4.101 24 C -0.142 4.142 25 C -0.112 4.112 26 C -0.140 4.140 27 C -0.113 4.113 28 N -0.192 5.192 29 C 0.019 3.981 30 H 0.072 0.928 31 H 0.070 0.930 32 H 0.061 0.939 33 H 0.071 0.929 34 H 0.118 0.882 35 H 0.103 0.897 36 H 0.108 0.892 37 H 0.255 0.745 38 H 0.274 0.726 39 H 0.151 0.849 40 H 0.171 0.829 41 H 0.175 0.825 42 H 0.174 0.826 43 H 0.156 0.844 44 H 0.052 0.948 45 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 31.187 -15.818 0.153 34.970 hybrid contribution -1.013 0.277 0.438 1.138 sum 30.174 -15.541 0.591 33.947 Atomic orbital electron populations 1.69990 1.07620 1.27445 1.55272 1.25990 0.95965 1.01391 0.99831 0.85751 0.78575 0.79150 0.78003 1.19152 1.23895 1.18355 1.18776 0.86804 0.93419 1.39519 0.94418 1.44359 1.07584 1.34213 1.47970 1.21568 0.97197 0.91991 0.90412 1.21917 0.97994 0.98951 0.97535 1.21648 0.97938 0.96007 0.98826 1.21396 0.90076 0.89794 0.95596 0.91984 1.45707 1.12224 1.12208 1.64057 1.17046 0.86005 0.81730 0.76880 1.90863 1.19440 1.77919 1.56662 1.21604 0.91323 0.96490 1.11498 1.25878 0.88750 0.93604 0.95929 1.84456 1.16061 1.41534 1.65171 1.24273 0.92189 0.81834 0.98340 1.17482 0.83224 0.97620 1.06521 1.21329 0.93589 0.97698 0.97452 1.21450 0.94287 0.99332 0.99094 1.21816 1.01665 0.92388 0.95380 1.21449 0.92046 1.00691 0.99804 1.21447 0.97279 0.95760 0.96856 1.70872 1.04697 1.26075 1.17565 1.21257 0.92158 0.90340 0.94354 0.92788 0.92982 0.93894 0.92945 0.88205 0.89660 0.89196 0.74500 0.72559 0.84882 0.82870 0.82529 0.82584 0.84388 0.94826 0.94259 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -62.49 13.97 21.65 0.30 -62.18 16 2 C -0.04 -2.26 5.23 84.86 0.44 -1.82 16 3 Si 0.96 47.40 24.34 68.60 1.67 49.07 16 4 H -0.27 -12.08 6.62 99.48 0.66 -11.42 16 5 H -0.31 -15.57 7.11 99.48 0.71 -14.86 16 6 H -0.26 -12.19 6.64 99.48 0.66 -11.53 16 7 C -0.26 -15.54 10.03 84.03 0.84 -14.70 16 8 H 0.04 2.59 8.06 -2.91 -0.02 2.56 16 9 N -0.62 -30.71 2.77 -699.09 -1.94 -32.64 16 10 C 0.11 4.72 4.21 86.36 0.36 5.08 16 11 C -0.12 -3.98 6.08 30.67 0.19 -3.80 16 12 C -0.11 -2.90 5.35 30.62 0.16 -2.74 16 13 C 0.14 4.80 2.60 45.07 0.12 4.91 16 14 H 0.06 2.57 7.58 -2.39 -0.02 2.56 16 15 N -0.69 -20.65 5.08 -445.39 -2.26 -22.91 16 16 C 0.60 19.72 7.78 86.67 0.67 20.39 16 17 O -0.57 -23.26 16.55 -4.07 -0.07 -23.32 16 18 C -0.09 -2.40 6.99 40.50 0.28 -2.12 16 19 C 0.03 0.70 11.94 67.35 0.80 1.51 16 20 O -0.19 -3.82 10.45 -3.97 -0.04 -3.86 16 21 C 0.24 5.20 7.88 87.39 0.69 5.89 16 22 C -0.05 -0.80 5.87 -20.09 -0.12 -0.92 16 23 C -0.08 -1.19 9.68 22.52 0.22 -0.97 16 24 C -0.12 -1.15 10.03 22.23 0.22 -0.93 16 25 C -0.09 -0.65 10.04 22.32 0.22 -0.42 16 26 C -0.12 -0.97 10.03 22.23 0.22 -0.74 16 27 C -0.09 -1.17 9.71 22.52 0.22 -0.95 16 28 N -0.46 -11.51 10.65 -294.25 -3.13 -14.65 16 29 C 0.15 6.26 6.09 86.36 0.53 6.79 16 30 H 0.26 16.15 8.31 -92.70 -0.77 15.38 16 31 H 0.05 2.41 4.50 -2.38 -0.01 2.40 16 32 H 0.04 1.68 7.07 -2.39 -0.02 1.66 16 33 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 34 H 0.10 2.47 8.14 -2.39 -0.02 2.45 16 35 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 36 H 0.09 1.99 8.14 -2.39 -0.02 1.97 16 37 H 0.42 10.20 8.33 -92.70 -0.77 9.42 16 38 H 0.26 4.04 8.06 -2.91 -0.02 4.02 16 39 H 0.13 2.02 7.82 -2.91 -0.02 2.00 16 40 H 0.15 0.71 8.06 -2.91 -0.02 0.69 16 41 H 0.16 0.17 8.06 -2.91 -0.02 0.15 16 42 H 0.16 0.40 8.06 -2.91 -0.02 0.37 16 43 H 0.14 1.43 7.89 -2.91 -0.02 1.41 16 44 H 0.03 1.64 7.93 -2.39 -0.02 1.62 16 45 H 0.04 1.57 8.14 -2.38 -0.02 1.55 16 Total: -1.00 -80.57 374.15 0.77 -79.80 By element: Atomic # 1 Polarization: 16.07 SS G_CDS: 0.16 Total: 16.23 kcal Atomic # 6 Polarization: 8.39 SS G_CDS: 6.08 Total: 14.47 kcal Atomic # 7 Polarization: -125.35 SS G_CDS: -7.03 Total: -132.38 kcal Atomic # 8 Polarization: -27.07 SS G_CDS: -0.11 Total: -27.18 kcal Atomic # 14 Polarization: 47.40 SS G_CDS: 1.67 Total: 49.07 kcal Total: -80.57 0.77 -79.80 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001009251065.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.705 kcal (2) G-P(sol) polarization free energy of solvation -80.573 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.799 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.906 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds