Wall clock time and date at job start Sat Apr 11 2020 06:18:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86799 * 120.00382 * 2 1 4 4 H 1.48497 * 109.46907 * 269.99870 * 3 2 1 5 5 H 1.48497 * 109.47172 * 29.99556 * 3 2 1 6 6 H 1.48495 * 109.47131 * 149.99790 * 3 2 1 7 7 C 1.38820 * 119.99505 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99770 * 197.85692 * 7 2 1 9 9 N 1.36937 * 120.00146 * 17.85174 * 7 2 1 10 10 C 1.46846 * 120.38550 * 208.90765 * 9 7 2 11 11 C 1.53345 * 108.81173 * 236.88756 * 10 9 7 12 12 C 1.53183 * 108.77018 * 308.68098 * 11 10 9 13 13 C 1.52845 * 117.65960 * 269.97860 * 12 11 10 14 14 C 1.52811 * 117.71628 * 201.12046 * 12 11 10 15 15 H 1.09004 * 117.50030 * 0.10889 * 14 12 11 16 16 N 1.46501 * 117.50251 * 215.09912 * 14 12 11 17 17 C 1.34774 * 120.00062 * 154.99882 * 16 14 12 18 18 O 1.21654 * 120.00000 * 0.02562 * 17 16 14 19 19 C 1.46982 * 120.00083 * 179.72717 * 17 16 14 20 20 C 1.35844 * 125.12027 * 180.27571 * 19 17 16 21 21 C 1.46102 * 106.07062 * 180.02562 * 20 19 17 22 22 C 1.39449 * 135.07697 * 180.02562 * 21 20 19 23 23 N 1.31679 * 120.07454 * 179.97438 * 22 21 20 24 24 C 1.32299 * 122.14247 * 0.03825 * 23 22 21 25 25 C 1.37760 * 121.58553 * 359.97438 * 24 23 22 26 26 C 1.39237 * 118.95403 * 359.97438 * 25 24 23 27 27 O 1.34282 * 134.37640 * 180.37395 * 26 25 24 28 28 C 1.53191 * 115.07358 * 55.45055 * 12 11 10 29 29 C 1.46842 * 120.38141 * 28.88897 * 9 7 2 30 30 H 0.97001 * 119.99826 * 0.02562 * 1 2 3 31 31 H 1.08995 * 109.57869 * 117.08534 * 10 9 7 32 32 H 1.09008 * 109.57616 * 356.68685 * 10 9 7 33 33 H 1.08997 * 109.58762 * 188.89453 * 11 10 9 34 34 H 1.09004 * 109.58849 * 68.46896 * 11 10 9 35 35 H 1.09000 * 117.50604 * 144.80749 * 13 12 11 36 36 H 1.09000 * 117.50356 * 359.75926 * 13 12 11 37 37 H 0.96998 * 120.00192 * 335.00160 * 16 14 12 38 38 H 1.08003 * 126.96979 * 359.96033 * 20 19 17 39 39 H 1.08003 * 119.96085 * 359.97438 * 22 21 20 40 40 H 1.07996 * 119.21050 * 179.97438 * 24 23 22 41 41 H 1.08006 * 120.52305 * 179.97438 * 25 24 23 42 42 H 1.08995 * 109.58617 * 64.34099 * 28 12 11 43 43 H 1.08996 * 109.58497 * 184.77641 * 28 12 11 44 44 H 1.08996 * 109.57743 * 242.91845 * 29 9 7 45 45 H 1.09001 * 109.57853 * 3.32331 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4478 2.6527 0.6999 6 1 3.5478 1.4400 0.7001 7 6 2.0102 -1.2023 0.0005 8 1 3.0512 -1.2247 0.2874 9 7 1.3749 -2.3598 -0.3625 10 6 1.8049 -3.6490 0.1937 11 6 2.1664 -4.5901 -0.9617 12 6 1.0056 -4.6122 -1.9610 13 6 -0.0888 -5.6590 -1.7544 14 6 0.9057 -5.8074 -2.9080 15 1 1.6661 -6.5835 -2.8209 16 7 0.4110 -5.5566 -4.2640 17 6 0.7530 -6.3856 -5.2700 18 8 1.4721 -7.3424 -5.0521 19 6 0.2519 -6.1375 -6.6293 20 6 0.5255 -6.9060 -7.7155 21 6 -0.1766 -6.2861 -8.8368 22 6 -0.3087 -6.5675 -10.1962 23 7 -1.0388 -5.7856 -10.9641 24 6 -1.6655 -4.7208 -10.4910 25 6 -1.5885 -4.3699 -9.1611 26 6 -0.8320 -5.1587 -8.2985 27 8 -0.5540 -5.1140 -6.9855 28 6 0.5854 -3.2405 -2.4982 29 6 0.2554 -2.3261 -1.3122 30 1 -0.4850 0.8401 -0.0004 31 1 0.9941 -4.0831 0.7786 32 1 2.6774 -3.4995 0.8299 33 1 2.3349 -5.5953 -0.5752 34 1 3.0684 -4.2309 -1.4571 35 1 -1.1109 -5.3747 -2.0043 36 1 0.0172 -6.3376 -0.9080 37 1 -0.1625 -4.7939 -4.4377 38 1 1.1386 -7.7947 -7.7447 39 1 0.1883 -7.4277 -10.6198 40 1 -2.2515 -4.1120 -11.1635 41 1 -2.1068 -3.4966 -8.7933 42 1 1.4022 -2.8087 -3.0765 43 1 -0.2952 -3.3501 -3.1311 44 1 -0.6513 -2.6783 -0.8206 45 1 0.1083 -1.3061 -1.6673 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001016711109.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:17 Heat of formation + Delta-G solvation = 56.505626 kcal Electronic energy + Delta-G solvation = -28654.174530 eV Core-core repulsion = 24639.712454 eV Total energy + Delta-G solvation = -4014.462077 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -43.12278 -40.14397 -39.33822 -38.46030 -35.61030 -33.52682 -33.30305 -32.12266 -31.55066 -30.25130 -30.16888 -28.30998 -25.48729 -24.38659 -23.90220 -22.76042 -22.52371 -21.77390 -21.08668 -20.60522 -18.88124 -18.39877 -18.22090 -16.94192 -16.73753 -16.37905 -16.03187 -15.90102 -14.97558 -14.92976 -14.85844 -14.59756 -14.23109 -13.92743 -13.82742 -13.63693 -13.57555 -13.40995 -13.07534 -12.71475 -12.36854 -12.03555 -11.80699 -11.59860 -11.45912 -11.05227 -10.82115 -10.77554 -10.66443 -10.49547 -10.34724 -10.18124 -9.99903 -9.87315 -9.77939 -9.64796 -9.45938 -8.91871 -8.58947 -8.48932 -6.68489 -5.82706 -3.25818 -0.00335 0.78068 1.32113 1.90839 2.78073 2.79207 3.28273 3.35205 3.42647 3.43585 3.86566 3.91757 4.06991 4.10768 4.39420 4.46745 4.50401 4.74321 4.86480 4.90074 5.03621 5.04839 5.20103 5.25259 5.35131 5.44268 5.44734 5.57795 5.66254 5.70906 5.89131 5.96815 5.99070 6.04713 6.22388 6.28292 6.39789 6.45564 6.50991 6.57827 6.63970 6.77736 6.95063 7.22051 7.29510 7.44287 7.59986 7.76748 7.79692 8.42760 9.18108 9.81571 10.38021 11.25142 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.013715 B = 0.002466 C = 0.002182 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2041.081756 B =11352.552861 C =12831.956116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.002 3.998 3 Si 0.901 3.099 4 H -0.288 1.288 5 H -0.291 1.291 6 H -0.279 1.279 7 C -0.253 4.253 8 H 0.065 0.935 9 N -0.590 5.590 10 C 0.149 3.851 11 C -0.098 4.098 12 C -0.093 4.093 13 C -0.178 4.178 14 C 0.063 3.937 15 H 0.136 0.864 16 N -0.678 5.678 17 C 0.601 3.399 18 O -0.515 6.515 19 C -0.020 4.020 20 C -0.098 4.098 21 C -0.201 4.201 22 C 0.175 3.825 23 N -0.494 5.494 24 C 0.118 3.882 25 C -0.159 4.159 26 C 0.106 3.894 27 O -0.177 6.177 28 C -0.107 4.107 29 C 0.174 3.826 30 H 0.254 0.746 31 H 0.020 0.980 32 H 0.056 0.944 33 H 0.054 0.946 34 H 0.064 0.936 35 H 0.094 0.906 36 H 0.101 0.899 37 H 0.409 0.591 38 H 0.177 0.823 39 H 0.168 0.832 40 H 0.171 0.829 41 H 0.149 0.851 42 H 0.062 0.938 43 H 0.044 0.956 44 H 0.019 0.981 45 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.333 -12.974 -17.275 21.860 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.196 4.196 3 Si 0.731 3.269 4 H -0.215 1.215 5 H -0.218 1.218 6 H -0.204 1.204 7 C -0.383 4.383 8 H 0.083 0.917 9 N -0.312 5.312 10 C 0.022 3.978 11 C -0.138 4.138 12 C -0.094 4.094 13 C -0.217 4.217 14 C -0.042 4.042 15 H 0.154 0.846 16 N -0.326 5.326 17 C 0.386 3.614 18 O -0.393 6.393 19 C -0.070 4.070 20 C -0.120 4.120 21 C -0.204 4.204 22 C 0.011 3.989 23 N -0.204 5.204 24 C -0.032 4.032 25 C -0.180 4.180 26 C 0.050 3.950 27 O -0.077 6.077 28 C -0.146 4.146 29 C 0.048 3.952 30 H 0.064 0.936 31 H 0.038 0.962 32 H 0.074 0.926 33 H 0.073 0.927 34 H 0.083 0.917 35 H 0.113 0.887 36 H 0.119 0.881 37 H 0.245 0.755 38 H 0.195 0.805 39 H 0.185 0.815 40 H 0.188 0.812 41 H 0.167 0.833 42 H 0.081 0.919 43 H 0.062 0.938 44 H 0.037 0.963 45 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -3.150 -13.410 -17.740 22.460 hybrid contribution 0.093 1.422 0.757 1.613 sum -3.058 -11.988 -16.983 21.012 Atomic orbital electron populations 1.70033 1.05276 1.25525 1.53771 1.25054 0.95263 0.98467 1.00851 0.86301 0.79189 0.83665 0.77705 1.21456 1.21769 1.20398 1.19212 0.92893 0.84996 1.41167 0.91702 1.43980 1.37800 1.01616 1.47784 1.20860 0.97515 0.86877 0.92498 1.21710 0.95819 0.99437 0.96828 1.21991 0.98305 0.91068 0.98079 1.23552 0.95955 1.02967 0.99206 1.22014 1.01496 1.03146 0.77583 0.84629 1.45334 1.50541 1.29091 1.07621 1.16546 0.80603 0.83020 0.81272 1.90886 1.37168 1.29296 1.81949 1.22196 0.98376 0.90314 0.96100 1.22688 1.00009 1.00609 0.88696 1.20972 1.03998 0.98586 0.96836 1.22480 0.92365 0.96943 0.87101 1.67817 1.08782 1.05380 1.38430 1.22649 0.95390 0.93124 0.92019 1.21120 1.02199 1.01989 0.92659 1.19878 0.96970 0.96037 0.82104 1.84008 1.55958 1.44606 1.23131 1.21843 0.99177 0.93568 1.00007 1.20747 0.88903 0.98611 0.86981 0.93631 0.96190 0.92562 0.92710 0.91711 0.88728 0.88099 0.75456 0.80521 0.81539 0.81218 0.83328 0.91947 0.93780 0.96328 0.89159 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.63 11.23 55.49 0.62 -25.00 16 2 C 0.00 0.06 4.89 -17.43 -0.09 -0.02 16 3 Si 0.90 21.37 29.59 -169.99 -5.03 16.34 16 4 H -0.29 -6.81 7.11 56.52 0.40 -6.40 16 5 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 6 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 7 C -0.25 -6.79 9.54 -15.06 -0.14 -6.94 16 8 H 0.07 1.72 7.89 -52.49 -0.41 1.31 16 9 N -0.59 -14.30 2.94 -172.26 -0.51 -14.80 16 10 C 0.15 3.01 6.52 -3.68 -0.02 2.99 16 11 C -0.10 -1.64 5.83 -26.46 -0.15 -1.79 16 12 C -0.09 -1.47 1.94 -154.49 -0.30 -1.77 16 13 C -0.18 -2.45 9.86 -26.80 -0.26 -2.72 16 14 C 0.06 0.87 6.14 -68.01 -0.42 0.45 16 15 H 0.14 1.93 7.40 -51.93 -0.38 1.54 16 16 N -0.68 -8.84 5.34 -55.10 -0.29 -9.14 16 17 C 0.60 8.09 7.79 -12.72 -0.10 7.99 16 18 O -0.52 -8.09 16.39 5.23 0.09 -8.01 16 19 C -0.02 -0.24 7.07 -36.90 -0.26 -0.50 16 20 C -0.10 -0.99 10.80 -37.29 -0.40 -1.39 16 21 C -0.20 -1.97 6.43 -105.22 -0.68 -2.65 16 22 C 0.18 1.47 11.28 -17.17 -0.19 1.27 16 23 N -0.49 -4.49 10.34 -13.00 -0.13 -4.62 16 24 C 0.12 0.88 11.13 -17.52 -0.20 0.69 16 25 C -0.16 -1.30 10.13 -39.39 -0.40 -1.70 16 26 C 0.11 1.11 7.48 -38.13 -0.29 0.83 16 27 O -0.18 -2.06 10.26 3.67 0.04 -2.02 16 28 C -0.11 -1.90 5.37 -26.45 -0.14 -2.05 16 29 C 0.17 3.96 5.40 -3.67 -0.02 3.94 16 30 H 0.25 6.98 8.31 -40.82 -0.34 6.64 16 31 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.06 1.12 7.92 -51.92 -0.41 0.71 16 33 H 0.05 0.78 8.10 -51.93 -0.42 0.36 16 34 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 35 H 0.09 1.27 8.14 -51.93 -0.42 0.85 16 36 H 0.10 1.28 8.14 -51.93 -0.42 0.86 16 37 H 0.41 4.97 6.83 -40.82 -0.28 4.69 16 38 H 0.18 1.44 8.06 -52.48 -0.42 1.02 16 39 H 0.17 0.89 8.06 -52.48 -0.42 0.47 16 40 H 0.17 0.72 8.06 -52.49 -0.42 0.30 16 41 H 0.15 0.89 8.06 -52.48 -0.42 0.46 16 42 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 43 H 0.04 0.68 6.75 -51.93 -0.35 0.33 16 44 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 45 H 0.09 2.33 5.93 -51.93 -0.31 2.02 16 LS Contribution 375.23 15.07 5.65 5.65 Total: -1.00 -31.49 375.23 -9.56 -41.04 By element: Atomic # 1 Polarization: 9.87 SS G_CDS: -5.93 Total: 3.94 kcal Atomic # 6 Polarization: 0.68 SS G_CDS: -4.06 Total: -3.38 kcal Atomic # 7 Polarization: -53.26 SS G_CDS: -0.31 Total: -53.57 kcal Atomic # 8 Polarization: -10.15 SS G_CDS: 0.12 Total: -10.03 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.03 Total: 16.34 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -31.49 -9.56 -41.04 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001016711109.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.548 kcal (2) G-P(sol) polarization free energy of solvation -31.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.556 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.042 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds