Wall clock time and date at job start Sat Apr 11 2020 06:18:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86799 * 120.00382 * 2 1 4 4 H 1.48497 * 109.46907 * 269.99870 * 3 2 1 5 5 H 1.48497 * 109.47172 * 29.99556 * 3 2 1 6 6 H 1.48495 * 109.47131 * 149.99790 * 3 2 1 7 7 C 1.38820 * 119.99505 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99770 * 197.85692 * 7 2 1 9 9 N 1.36937 * 120.00146 * 17.85174 * 7 2 1 10 10 C 1.46846 * 120.38550 * 208.90765 * 9 7 2 11 11 C 1.53345 * 108.81173 * 236.88756 * 10 9 7 12 12 C 1.53183 * 108.77018 * 308.68098 * 11 10 9 13 13 C 1.52845 * 117.65960 * 269.97860 * 12 11 10 14 14 C 1.52811 * 117.71628 * 201.12046 * 12 11 10 15 15 H 1.09004 * 117.50030 * 0.10889 * 14 12 11 16 16 N 1.46501 * 117.50251 * 215.09912 * 14 12 11 17 17 C 1.34774 * 120.00062 * 154.99882 * 16 14 12 18 18 O 1.21654 * 120.00000 * 0.02562 * 17 16 14 19 19 C 1.46982 * 120.00083 * 179.72717 * 17 16 14 20 20 C 1.35844 * 125.12027 * 180.27571 * 19 17 16 21 21 C 1.46102 * 106.07062 * 180.02562 * 20 19 17 22 22 C 1.39449 * 135.07697 * 180.02562 * 21 20 19 23 23 N 1.31679 * 120.07454 * 179.97438 * 22 21 20 24 24 C 1.32299 * 122.14247 * 0.03825 * 23 22 21 25 25 C 1.37760 * 121.58553 * 359.97438 * 24 23 22 26 26 C 1.39237 * 118.95403 * 359.97438 * 25 24 23 27 27 O 1.34282 * 134.37640 * 180.37395 * 26 25 24 28 28 C 1.53191 * 115.07358 * 55.45055 * 12 11 10 29 29 C 1.46842 * 120.38141 * 28.88897 * 9 7 2 30 30 H 0.97001 * 119.99826 * 0.02562 * 1 2 3 31 31 H 1.08995 * 109.57869 * 117.08534 * 10 9 7 32 32 H 1.09008 * 109.57616 * 356.68685 * 10 9 7 33 33 H 1.08997 * 109.58762 * 188.89453 * 11 10 9 34 34 H 1.09004 * 109.58849 * 68.46896 * 11 10 9 35 35 H 1.09000 * 117.50604 * 144.80749 * 13 12 11 36 36 H 1.09000 * 117.50356 * 359.75926 * 13 12 11 37 37 H 0.96998 * 120.00192 * 335.00160 * 16 14 12 38 38 H 1.08003 * 126.96979 * 359.96033 * 20 19 17 39 39 H 1.08003 * 119.96085 * 359.97438 * 22 21 20 40 40 H 1.07996 * 119.21050 * 179.97438 * 24 23 22 41 41 H 1.08006 * 120.52305 * 179.97438 * 25 24 23 42 42 H 1.08995 * 109.58617 * 64.34099 * 28 12 11 43 43 H 1.08996 * 109.58497 * 184.77641 * 28 12 11 44 44 H 1.08996 * 109.57743 * 242.91845 * 29 9 7 45 45 H 1.09001 * 109.57853 * 3.32331 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4478 2.6527 0.6999 6 1 3.5478 1.4400 0.7001 7 6 2.0102 -1.2023 0.0005 8 1 3.0512 -1.2247 0.2874 9 7 1.3749 -2.3598 -0.3625 10 6 1.8049 -3.6490 0.1937 11 6 2.1664 -4.5901 -0.9617 12 6 1.0056 -4.6122 -1.9610 13 6 -0.0888 -5.6590 -1.7544 14 6 0.9057 -5.8074 -2.9080 15 1 1.6661 -6.5835 -2.8209 16 7 0.4110 -5.5566 -4.2640 17 6 0.7530 -6.3856 -5.2700 18 8 1.4721 -7.3424 -5.0521 19 6 0.2519 -6.1375 -6.6293 20 6 0.5255 -6.9060 -7.7155 21 6 -0.1766 -6.2861 -8.8368 22 6 -0.3087 -6.5675 -10.1962 23 7 -1.0388 -5.7856 -10.9641 24 6 -1.6655 -4.7208 -10.4910 25 6 -1.5885 -4.3699 -9.1611 26 6 -0.8320 -5.1587 -8.2985 27 8 -0.5540 -5.1140 -6.9855 28 6 0.5854 -3.2405 -2.4982 29 6 0.2554 -2.3261 -1.3122 30 1 -0.4850 0.8401 -0.0004 31 1 0.9941 -4.0831 0.7786 32 1 2.6774 -3.4995 0.8299 33 1 2.3349 -5.5953 -0.5752 34 1 3.0684 -4.2309 -1.4571 35 1 -1.1109 -5.3747 -2.0043 36 1 0.0172 -6.3376 -0.9080 37 1 -0.1625 -4.7939 -4.4377 38 1 1.1386 -7.7947 -7.7447 39 1 0.1883 -7.4277 -10.6198 40 1 -2.2515 -4.1120 -11.1635 41 1 -2.1068 -3.4966 -8.7933 42 1 1.4022 -2.8087 -3.0765 43 1 -0.2952 -3.3501 -3.1311 44 1 -0.6513 -2.6783 -0.8206 45 1 0.1083 -1.3061 -1.6673 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001016711109.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:15 Heat of formation + Delta-G solvation = 37.568558 kcal Electronic energy + Delta-G solvation = -28654.995703 eV Core-core repulsion = 24639.712454 eV Total energy + Delta-G solvation = -4015.283250 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -43.87565 -41.22810 -40.11334 -39.66416 -37.20240 -34.75521 -34.13288 -33.38130 -32.71470 -31.77399 -31.04349 -29.90621 -26.41040 -26.14494 -24.62469 -24.09480 -23.56316 -22.94865 -22.31107 -21.76785 -19.96703 -19.65547 -19.08720 -18.36908 -17.75081 -17.44092 -16.97287 -16.80494 -16.66270 -15.92771 -15.79285 -15.59763 -15.54752 -15.36460 -15.00796 -14.74802 -14.51133 -14.49300 -14.31592 -14.18435 -13.81286 -13.36024 -13.09406 -12.96182 -12.67021 -12.63873 -12.59460 -12.32344 -12.02062 -11.79527 -11.69158 -11.54713 -11.43747 -11.27040 -10.82470 -10.74230 -10.59459 -10.50804 -9.89344 -9.51138 -8.63497 -7.87376 -5.33257 -0.73152 0.08629 0.55266 1.12045 1.45565 1.47244 1.55668 1.81107 1.83146 2.50667 2.64803 2.89082 3.10125 3.27093 3.29015 3.44054 3.60473 3.70815 3.76262 3.77765 3.82768 3.94228 4.09825 4.10184 4.26307 4.51239 4.53377 4.60548 4.63309 4.69735 4.80697 4.82215 4.83179 4.91405 4.97184 4.99924 5.05355 5.19828 5.22556 5.27926 5.34384 5.38017 5.52461 5.64770 5.66137 5.76166 6.21366 6.40520 6.77568 6.82252 7.15837 7.88054 8.38646 9.17645 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.013715 B = 0.002466 C = 0.002182 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2041.081756 B =11352.552861 C =12831.956116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.049 4.049 3 Si 0.963 3.037 4 H -0.286 1.286 5 H -0.295 1.295 6 H -0.270 1.270 7 C -0.262 4.262 8 H 0.063 0.937 9 N -0.609 5.609 10 C 0.145 3.855 11 C -0.087 4.087 12 C -0.114 4.114 13 C -0.165 4.165 14 C 0.081 3.919 15 H 0.139 0.861 16 N -0.677 5.677 17 C 0.605 3.395 18 O -0.542 6.542 19 C -0.048 4.048 20 C -0.079 4.079 21 C -0.216 4.216 22 C 0.179 3.821 23 N -0.512 5.512 24 C 0.124 3.876 25 C -0.166 4.166 26 C 0.086 3.914 27 O -0.189 6.189 28 C -0.091 4.091 29 C 0.181 3.819 30 H 0.250 0.750 31 H 0.019 0.981 32 H 0.053 0.947 33 H 0.086 0.914 34 H 0.055 0.945 35 H 0.099 0.901 36 H 0.118 0.882 37 H 0.413 0.587 38 H 0.195 0.805 39 H 0.195 0.805 40 H 0.203 0.797 41 H 0.168 0.832 42 H 0.048 0.952 43 H 0.066 0.934 44 H 0.000 1.000 45 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.238 -14.273 -19.078 24.045 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.245 4.245 3 Si 0.791 3.209 4 H -0.213 1.213 5 H -0.221 1.221 6 H -0.194 1.194 7 C -0.392 4.392 8 H 0.081 0.919 9 N -0.332 5.332 10 C 0.020 3.980 11 C -0.126 4.126 12 C -0.116 4.116 13 C -0.203 4.203 14 C -0.024 4.024 15 H 0.157 0.843 16 N -0.325 5.325 17 C 0.392 3.608 18 O -0.421 6.421 19 C -0.097 4.097 20 C -0.101 4.101 21 C -0.219 4.219 22 C 0.016 3.984 23 N -0.222 5.222 24 C -0.025 4.025 25 C -0.186 4.186 26 C 0.030 3.970 27 O -0.089 6.089 28 C -0.130 4.130 29 C 0.055 3.945 30 H 0.059 0.941 31 H 0.037 0.963 32 H 0.072 0.928 33 H 0.105 0.895 34 H 0.073 0.927 35 H 0.117 0.883 36 H 0.136 0.864 37 H 0.250 0.750 38 H 0.212 0.788 39 H 0.212 0.788 40 H 0.220 0.780 41 H 0.185 0.815 42 H 0.067 0.933 43 H 0.084 0.916 44 H 0.019 0.981 45 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -3.047 -14.728 -19.551 24.667 hybrid contribution 0.017 1.799 1.223 2.175 sum -3.030 -12.929 -18.329 22.634 Atomic orbital electron populations 1.70175 1.06561 1.25801 1.55292 1.25759 0.96005 1.01367 1.01349 0.85330 0.78195 0.79820 0.77510 1.21315 1.22125 1.19447 1.19504 0.93051 0.86326 1.40350 0.91887 1.44251 1.37936 1.02391 1.48635 1.21002 0.97192 0.85913 0.93932 1.21540 0.95627 0.99933 0.95472 1.21831 0.99518 0.90594 0.99639 1.23643 0.95613 1.01503 0.99579 1.21880 1.01439 1.01176 0.77898 0.84313 1.45315 1.50521 1.29307 1.07396 1.16656 0.79952 0.82457 0.81771 1.90862 1.38383 1.30293 1.82588 1.21919 1.00355 0.91693 0.95769 1.22985 0.98644 1.00225 0.88239 1.21121 1.04571 0.98744 0.97458 1.22950 0.91664 0.97371 0.86450 1.67916 1.09386 1.06110 1.38799 1.23230 0.94446 0.92620 0.92191 1.21450 1.02066 1.02454 0.92654 1.20372 0.97698 0.96992 0.81903 1.83959 1.56308 1.44758 1.23908 1.21548 0.99627 0.93872 0.97937 1.20532 0.88090 0.97662 0.88254 0.94110 0.96258 0.92843 0.89507 0.92655 0.88294 0.86420 0.75010 0.78826 0.78805 0.78036 0.81464 0.93288 0.91571 0.98146 0.92748 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.64 11.23 21.65 0.24 -54.40 16 2 C -0.05 -2.74 4.89 84.86 0.41 -2.32 16 3 Si 0.96 44.74 29.59 68.60 2.03 46.77 16 4 H -0.29 -13.12 7.11 99.48 0.71 -12.42 16 5 H -0.29 -13.74 7.11 99.48 0.71 -13.04 16 6 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 7 C -0.26 -14.34 9.54 84.04 0.80 -13.54 16 8 H 0.06 3.39 7.89 -2.91 -0.02 3.37 16 9 N -0.61 -30.11 2.94 -698.90 -2.05 -32.17 16 10 C 0.15 5.83 6.52 86.43 0.56 6.39 16 11 C -0.09 -2.76 5.83 30.77 0.18 -2.58 16 12 C -0.11 -3.47 1.94 -52.17 -0.10 -3.58 16 13 C -0.17 -4.17 9.86 30.55 0.30 -3.87 16 14 C 0.08 2.11 6.14 44.94 0.28 2.38 16 15 H 0.14 3.62 7.40 -2.39 -0.02 3.60 16 16 N -0.68 -16.88 5.34 -446.48 -2.38 -19.26 16 17 C 0.61 15.75 7.79 86.53 0.67 16.42 16 18 O -0.54 -16.44 16.39 -4.20 -0.07 -16.51 16 19 C -0.05 -1.11 7.07 24.01 0.17 -0.94 16 20 C -0.08 -1.50 10.80 23.76 0.26 -1.24 16 21 C -0.22 -3.91 6.43 -20.25 -0.13 -4.04 16 22 C 0.18 2.61 11.28 85.01 0.96 3.57 16 23 N -0.51 -8.10 10.34 -195.04 -2.02 -10.12 16 24 C 0.12 1.55 11.13 84.51 0.94 2.49 16 25 C -0.17 -2.41 10.13 22.40 0.23 -2.19 16 26 C 0.09 1.71 7.48 23.21 0.17 1.88 16 27 O -0.19 -4.29 10.26 -9.77 -0.10 -4.39 16 28 C -0.09 -3.24 5.37 30.78 0.17 -3.07 16 29 C 0.18 8.46 5.40 86.43 0.47 8.92 16 30 H 0.25 14.18 8.31 -92.71 -0.77 13.41 16 31 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 32 H 0.05 2.13 7.92 -2.38 -0.02 2.11 16 33 H 0.09 2.22 8.10 -2.39 -0.02 2.20 16 34 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 35 H 0.10 2.44 8.14 -2.39 -0.02 2.43 16 36 H 0.12 2.62 8.14 -2.39 -0.02 2.60 16 37 H 0.41 9.63 6.83 -92.71 -0.63 9.00 16 38 H 0.19 2.81 8.06 -2.91 -0.02 2.79 16 39 H 0.20 1.53 8.06 -2.91 -0.02 1.51 16 40 H 0.20 1.05 8.06 -2.91 -0.02 1.02 16 41 H 0.17 1.67 8.06 -2.91 -0.02 1.65 16 42 H 0.05 1.86 8.14 -2.39 -0.02 1.85 16 43 H 0.07 2.03 6.75 -2.39 -0.02 2.01 16 44 H 0.00 0.02 8.14 -2.39 -0.02 0.00 16 45 H 0.05 2.93 5.93 -2.39 -0.01 2.91 16 Total: -1.00 -69.45 375.23 2.38 -67.07 By element: Atomic # 1 Polarization: 17.91 SS G_CDS: 0.40 Total: 18.31 kcal Atomic # 6 Polarization: -1.63 SS G_CDS: 6.34 Total: 4.71 kcal Atomic # 7 Polarization: -109.74 SS G_CDS: -6.21 Total: -115.95 kcal Atomic # 8 Polarization: -20.73 SS G_CDS: -0.17 Total: -20.90 kcal Atomic # 14 Polarization: 44.74 SS G_CDS: 2.03 Total: 46.77 kcal Total: -69.45 2.38 -67.07 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001016711109.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.640 kcal (2) G-P(sol) polarization free energy of solvation -69.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.185 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.071 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.569 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds