Wall clock time and date at job start Sat Apr 11 2020 06:18:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86802 * 120.00370 * 2 1 4 4 H 1.48506 * 109.47190 * 240.00138 * 3 2 1 5 5 H 1.48506 * 109.46897 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.47671 * 119.99920 * 3 2 1 7 7 C 1.38813 * 120.00209 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00783 * 197.85192 * 7 2 1 9 9 N 1.36943 * 119.99531 * 17.85647 * 7 2 1 10 10 C 1.46847 * 120.37984 * 208.90690 * 9 7 2 11 11 C 1.53345 * 108.81159 * 236.87924 * 10 9 7 12 12 C 1.53191 * 108.77146 * 308.68856 * 11 10 9 13 13 C 1.52853 * 117.65646 * 269.97386 * 12 11 10 14 14 C 1.52817 * 117.71630 * 201.12041 * 12 11 10 15 15 H 1.08997 * 117.50016 * 215.13010 * 14 12 11 16 16 N 1.46504 * 117.50038 * 0.13413 * 14 12 11 17 17 C 1.34772 * 119.99907 * 205.00554 * 16 14 12 18 18 O 1.21566 * 120.00025 * 359.97438 * 17 16 14 19 19 C 1.47781 * 120.00295 * 180.27626 * 17 16 14 20 20 N 1.32823 * 120.06954 * 359.72101 * 19 17 16 21 21 C 1.31675 * 122.00941 * 179.97438 * 20 19 17 22 22 C 1.38389 * 121.70019 * 0.02562 * 21 20 19 23 23 C 1.38854 * 119.13690 * 359.97438 * 22 21 20 24 24 O 1.34433 * 134.63696 * 179.97438 * 23 22 21 25 25 C 1.34448 * 110.84965 * 180.02562 * 24 23 22 26 26 C 1.34301 * 110.17007 * 359.97438 * 25 24 23 27 27 C 1.40201 * 120.07791 * 179.44653 * 19 17 16 28 28 C 1.53185 * 115.07542 * 55.44311 * 12 11 10 29 29 C 1.46838 * 120.38552 * 28.88218 * 9 7 2 30 30 H 0.97002 * 119.99544 * 0.02562 * 1 2 3 31 31 H 1.09006 * 109.57553 * 117.08549 * 10 9 7 32 32 H 1.08993 * 109.58560 * 356.68367 * 10 9 7 33 33 H 1.08995 * 109.59135 * 188.90232 * 11 10 9 34 34 H 1.08997 * 109.58742 * 68.47199 * 11 10 9 35 35 H 1.09000 * 117.50205 * 144.80949 * 13 12 11 36 36 H 1.08999 * 117.50238 * 359.76526 * 13 12 11 37 37 H 0.96995 * 119.99649 * 25.00188 * 16 14 12 38 38 H 1.07997 * 119.14819 * 180.02562 * 21 20 19 39 39 H 1.08004 * 120.42890 * 180.02562 * 22 21 20 40 40 H 1.08001 * 124.91400 * 179.97438 * 25 24 23 41 41 H 1.07997 * 126.89377 * 180.02562 * 26 25 24 42 42 H 1.08999 * 109.58272 * 64.34847 * 28 12 11 43 43 H 1.08998 * 109.58526 * 184.77486 * 28 12 11 44 44 H 1.09000 * 109.58251 * 242.92706 * 29 9 7 45 45 H 1.09003 * 109.57793 * 3.32875 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1040 1.6963 -1.2126 5 1 1.2853 2.7465 -0.0006 6 1 3.1040 1.6964 1.2124 7 6 2.0102 -1.2021 0.0005 8 1 3.0513 -1.2246 0.2873 9 7 1.3750 -2.3597 -0.3626 10 6 1.8051 -3.6488 0.1936 11 6 2.1665 -4.5900 -0.9618 12 6 1.0057 -4.6120 -1.9612 13 6 -0.0887 -5.6589 -1.7546 14 6 0.9057 -5.8072 -2.9082 15 1 0.5382 -5.6205 -3.9172 16 7 1.9273 -6.8507 -2.7908 17 6 2.2155 -7.6337 -3.8491 18 8 1.6274 -7.4745 -4.9011 19 6 3.2417 -8.6903 -3.7290 20 7 3.8848 -8.8659 -2.5802 21 6 4.8053 -9.7955 -2.4306 22 6 5.1562 -10.6446 -3.4655 23 6 4.5207 -10.5130 -4.6931 24 8 4.6105 -11.1456 -5.8758 25 6 3.7519 -10.6193 -6.7665 26 6 3.0590 -9.6155 -6.2043 27 6 3.5345 -9.5134 -4.8256 28 6 0.5853 -3.2404 -2.4983 29 6 0.2555 -2.3260 -1.3122 30 1 -0.4849 0.8401 -0.0004 31 1 0.9942 -4.0831 0.7785 32 1 2.6775 -3.4995 0.8297 33 1 2.3350 -5.5952 -0.5754 34 1 3.0684 -4.2308 -1.4573 35 1 -1.1109 -5.3746 -2.0044 36 1 0.0172 -6.3375 -0.9082 37 1 2.3962 -6.9779 -1.9513 38 1 5.2991 -9.8979 -1.4756 39 1 5.9140 -11.4003 -3.3200 40 1 3.6361 -10.9550 -7.7864 41 1 2.3003 -9.0080 -6.6752 42 1 1.4021 -2.8085 -3.0766 43 1 -0.2953 -3.3500 -3.1312 44 1 -0.6513 -2.6782 -0.8206 45 1 0.1083 -1.3060 -1.6674 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001016746967.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:20 Heat of formation + Delta-G solvation = 59.920284 kcal Electronic energy + Delta-G solvation = -28848.705059 eV Core-core repulsion = 24834.391053 eV Total energy + Delta-G solvation = -4014.314006 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 1.86 seconds Orbital eigenvalues (eV) -43.07910 -40.26455 -39.15965 -38.15334 -35.48234 -33.34675 -33.26503 -32.08155 -31.46492 -30.22141 -29.90204 -28.23588 -25.49585 -24.31458 -23.48586 -22.96764 -22.43319 -21.67580 -20.86941 -20.35833 -18.43825 -18.27915 -18.07747 -17.17427 -16.72942 -16.47241 -16.05022 -15.70162 -15.10099 -14.85632 -14.75817 -14.49791 -14.02817 -13.77124 -13.53995 -13.48174 -13.32301 -13.26275 -13.07284 -12.64628 -12.24997 -12.20007 -11.62485 -11.57179 -11.29827 -10.95721 -10.72400 -10.69581 -10.53976 -10.41418 -10.30775 -10.03265 -9.92532 -9.87476 -9.66260 -9.59718 -9.32514 -8.81298 -8.42055 -8.41092 -6.61138 -5.76285 -3.19214 -0.05226 0.75787 1.89548 2.18840 2.49720 2.90910 3.40174 3.46028 3.47651 3.50303 3.77514 4.00994 4.12313 4.22168 4.48242 4.52183 4.61354 4.79485 4.93952 5.01421 5.16307 5.18300 5.26860 5.32549 5.41738 5.46174 5.54295 5.67117 5.83183 5.86285 5.97460 6.09011 6.12398 6.13704 6.33395 6.48564 6.51302 6.57322 6.65182 6.68365 6.73321 6.86910 7.00961 7.23949 7.39695 7.56460 7.69856 7.82051 8.10935 8.49400 9.24663 9.88364 10.45065 11.31463 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.021996 B = 0.002232 C = 0.002170 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1272.673714 B =12543.711941 C =12897.435454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.003 3.997 3 Si 0.901 3.099 4 H -0.284 1.284 5 H -0.291 1.291 6 H -0.283 1.283 7 C -0.253 4.253 8 H 0.064 0.936 9 N -0.589 5.589 10 C 0.150 3.850 11 C -0.098 4.098 12 C -0.094 4.094 13 C -0.180 4.180 14 C 0.064 3.936 15 H 0.134 0.866 16 N -0.671 5.671 17 C 0.572 3.428 18 O -0.531 6.531 19 C 0.141 3.859 20 N -0.462 5.462 21 C 0.112 3.888 22 C -0.137 4.137 23 C 0.080 3.920 24 O -0.189 6.189 25 C 0.003 3.997 26 C -0.175 4.175 27 C -0.133 4.133 28 C -0.105 4.105 29 C 0.173 3.827 30 H 0.254 0.746 31 H 0.019 0.981 32 H 0.054 0.946 33 H 0.047 0.953 34 H 0.064 0.936 35 H 0.100 0.900 36 H 0.092 0.908 37 H 0.412 0.588 38 H 0.177 0.823 39 H 0.150 0.850 40 H 0.217 0.783 41 H 0.174 0.826 42 H 0.060 0.940 43 H 0.051 0.949 44 H 0.019 0.981 45 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.551 -23.738 -9.655 26.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.196 4.196 3 Si 0.731 3.269 4 H -0.211 1.211 5 H -0.217 1.217 6 H -0.209 1.209 7 C -0.383 4.383 8 H 0.081 0.919 9 N -0.312 5.312 10 C 0.024 3.976 11 C -0.138 4.138 12 C -0.095 4.095 13 C -0.218 4.218 14 C -0.041 4.041 15 H 0.151 0.849 16 N -0.320 5.320 17 C 0.356 3.644 18 O -0.407 6.407 19 C -0.003 4.003 20 N -0.175 5.175 21 C -0.043 4.043 22 C -0.157 4.157 23 C 0.025 3.975 24 O -0.088 6.088 25 C -0.061 4.061 26 C -0.195 4.195 27 C -0.138 4.138 28 C -0.145 4.145 29 C 0.047 3.953 30 H 0.064 0.936 31 H 0.037 0.963 32 H 0.073 0.927 33 H 0.066 0.934 34 H 0.083 0.917 35 H 0.118 0.882 36 H 0.111 0.889 37 H 0.249 0.751 38 H 0.194 0.806 39 H 0.167 0.833 40 H 0.233 0.767 41 H 0.192 0.808 42 H 0.079 0.921 43 H 0.070 0.930 44 H 0.037 0.963 45 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 7.005 -23.152 -9.721 26.069 hybrid contribution 0.761 0.209 -0.326 0.854 sum 7.766 -22.943 -10.046 26.223 Atomic orbital electron populations 1.70025 1.05265 1.25595 1.53686 1.25040 0.95244 0.98412 1.00907 0.86395 0.78960 0.83432 0.78131 1.21052 1.21665 1.20903 1.19147 0.92813 0.85062 1.41272 0.91860 1.43971 1.37837 1.01494 1.47857 1.20838 0.97389 0.86986 0.92430 1.21638 0.96140 0.98829 0.97152 1.21978 0.97982 0.91152 0.98426 1.23539 0.96114 1.02588 0.99598 1.21988 0.93262 0.91507 0.97356 0.84878 1.45249 1.39111 1.33090 1.14575 1.17609 0.81780 0.80840 0.84143 1.90756 1.51642 1.70125 1.28170 1.20734 0.96003 0.95191 0.88355 1.67679 1.07322 1.19506 1.22983 1.22625 0.93347 0.89730 0.98551 1.21217 1.02343 1.03125 0.89025 1.19716 0.97186 0.93171 0.87449 1.83981 1.53852 1.52717 1.18283 1.24303 0.91155 0.95669 0.94965 1.22742 1.03915 1.00844 0.91981 1.20634 0.99019 0.98095 0.96021 1.21888 0.99686 0.93041 0.99878 1.20765 0.88801 0.98666 0.87057 0.93596 0.96285 0.92719 0.93393 0.91742 0.88191 0.88926 0.75075 0.80597 0.83265 0.76707 0.80813 0.92098 0.92988 0.96335 0.89173 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.09 11.23 55.49 0.62 -25.47 16 2 C 0.00 0.07 4.88 -17.43 -0.09 -0.01 16 3 Si 0.90 21.70 29.59 -169.99 -5.03 16.68 16 4 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 5 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 6 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 7 C -0.25 -6.93 9.54 -15.06 -0.14 -7.07 16 8 H 0.06 1.70 7.89 -52.49 -0.41 1.29 16 9 N -0.59 -14.66 2.94 -172.26 -0.51 -15.17 16 10 C 0.15 3.11 6.51 -3.67 -0.02 3.09 16 11 C -0.10 -1.68 5.37 -26.45 -0.14 -1.83 16 12 C -0.09 -1.58 1.94 -154.48 -0.30 -1.88 16 13 C -0.18 -2.67 9.86 -26.79 -0.26 -2.93 16 14 C 0.06 0.97 6.14 -68.01 -0.42 0.56 16 15 H 0.13 2.12 7.40 -51.93 -0.38 1.73 16 16 N -0.67 -9.49 5.34 -54.85 -0.29 -9.79 16 17 C 0.57 8.49 7.80 -12.36 -0.10 8.39 16 18 O -0.53 -8.92 14.77 5.31 0.08 -8.84 16 19 C 0.14 1.83 6.78 -82.80 -0.56 1.27 16 20 N -0.46 -5.23 9.55 -9.68 -0.09 -5.33 16 21 C 0.11 0.90 11.13 -17.56 -0.20 0.71 16 22 C -0.14 -1.05 10.13 -39.30 -0.40 -1.44 16 23 C 0.08 0.80 7.48 -38.29 -0.29 0.52 16 24 O -0.19 -1.72 10.57 4.96 0.05 -1.67 16 25 C 0.00 0.02 11.97 29.34 0.35 0.38 16 26 C -0.17 -1.79 10.31 -37.78 -0.39 -2.18 16 27 C -0.13 -1.61 6.16 -104.90 -0.65 -2.25 16 28 C -0.11 -2.02 5.83 -26.45 -0.15 -2.18 16 29 C 0.17 4.09 5.40 -3.68 -0.02 4.07 16 30 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 31 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.05 1.11 7.92 -51.93 -0.41 0.70 16 33 H 0.05 0.70 6.75 -51.93 -0.35 0.35 16 34 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16 35 H 0.10 1.43 8.14 -51.93 -0.42 1.01 16 36 H 0.09 1.29 8.14 -51.93 -0.42 0.87 16 37 H 0.41 5.39 6.46 -40.82 -0.26 5.13 16 38 H 0.18 0.79 8.06 -52.49 -0.42 0.36 16 39 H 0.15 0.66 8.06 -52.48 -0.42 0.24 16 40 H 0.22 0.59 8.06 -52.49 -0.42 0.17 16 41 H 0.17 1.80 7.29 -52.49 -0.38 1.42 16 42 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 43 H 0.05 0.90 8.10 -51.93 -0.42 0.48 16 44 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 45 H 0.09 2.40 5.93 -51.93 -0.31 2.09 16 LS Contribution 371.64 15.07 5.60 5.60 Total: -1.00 -32.79 371.64 -9.22 -42.00 By element: Atomic # 1 Polarization: 10.66 SS G_CDS: -5.88 Total: 4.79 kcal Atomic # 6 Polarization: 0.97 SS G_CDS: -3.77 Total: -2.81 kcal Atomic # 7 Polarization: -55.48 SS G_CDS: -0.27 Total: -55.75 kcal Atomic # 8 Polarization: -10.64 SS G_CDS: 0.13 Total: -10.51 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.03 Total: 16.68 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -32.79 -9.22 -42.00 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001016746967.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.921 kcal (2) G-P(sol) polarization free energy of solvation -32.786 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.215 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.001 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.920 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.86 seconds