Wall clock time and date at job start Sat Apr 11 2020 06:18:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86801 * 119.99833 * 2 1 4 4 H 1.48496 * 109.47031 * 239.99727 * 3 2 1 5 5 H 1.48497 * 109.47267 * 359.97438 * 3 2 1 6 6 H 1.48504 * 109.47169 * 120.00009 * 3 2 1 7 7 C 1.38811 * 120.00467 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00530 * 180.02562 * 7 2 1 9 9 N 1.36943 * 119.99622 * 359.72375 * 7 2 1 10 10 C 1.46504 * 119.99781 * 180.27904 * 9 7 2 11 11 H 1.09001 * 110.44040 * 32.43658 * 10 9 7 12 12 C 1.55947 * 110.48996 * 269.73257 * 10 9 7 13 13 C 1.56398 * 105.78962 * 248.87230 * 12 10 9 14 14 C 1.51000 * 101.59328 * 25.02347 * 13 12 10 15 15 H 1.09003 * 109.72709 * 69.23846 * 14 13 12 16 16 C 1.50351 * 125.55340 * 203.98719 * 14 13 12 17 17 N 1.49212 * 104.86393 * 144.30755 * 16 14 13 18 18 C 1.34776 * 126.06141 * 172.96855 * 17 16 14 19 19 O 1.21646 * 120.00108 * 179.97438 * 18 17 16 20 20 C 1.46992 * 119.99615 * 359.96489 * 18 17 16 21 21 C 1.35847 * 125.11953 * 179.71807 * 20 18 17 22 22 C 1.46096 * 106.06823 * 179.86136 * 21 20 18 23 23 C 1.39450 * 135.07333 * 180.12796 * 22 21 20 24 24 N 1.31678 * 120.07518 * 180.28726 * 23 22 21 25 25 C 1.32312 * 122.13772 * 0.02562 * 24 23 22 26 26 C 1.37749 * 121.58660 * 0.02562 * 25 24 23 27 27 C 1.39238 * 118.95692 * 359.97002 * 26 25 24 28 28 O 1.34276 * 134.37951 * 180.02562 * 27 26 25 29 29 C 1.49702 * 107.88254 * 352.93997 * 17 16 14 30 30 C 1.50293 * 110.49293 * 155.00395 * 10 9 7 31 31 H 1.09001 * 109.99421 * 198.25759 * 30 10 9 32 32 H 0.96995 * 120.00147 * 0.02562 * 1 2 3 33 33 H 0.97000 * 119.99808 * 0.27579 * 9 7 2 34 34 H 1.09000 * 110.18730 * 7.95849 * 12 10 9 35 35 H 1.09000 * 110.18179 * 129.79550 * 12 10 9 36 36 H 1.08995 * 111.00692 * 266.94409 * 13 12 10 37 37 H 1.08997 * 111.03286 * 143.11333 * 13 12 10 38 38 H 1.09007 * 110.35675 * 25.46544 * 16 14 13 39 39 H 1.08995 * 110.45453 * 263.20530 * 16 14 13 40 40 H 1.08007 * 126.96383 * 359.97438 * 21 20 18 41 41 H 1.08001 * 119.96180 * 0.27037 * 23 22 21 42 42 H 1.07996 * 119.20349 * 179.97438 * 25 24 23 43 43 H 1.07999 * 120.52303 * 180.02562 * 26 25 24 44 44 H 1.09000 * 110.84547 * 216.66722 * 29 17 16 45 45 H 1.08998 * 111.01935 * 93.13449 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1039 1.6964 -1.2124 5 1 1.2851 2.7465 -0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3256 -2.3880 0.0068 10 6 2.0582 -3.6567 0.0135 11 1 2.9951 -3.5524 0.5609 12 6 2.3253 -4.1406 -1.4447 13 6 1.4374 -5.4132 -1.6402 14 6 0.3419 -5.1772 -0.6282 15 1 -0.2834 -4.3444 -0.9503 16 6 -0.5069 -6.2439 0.0062 17 7 -0.7350 -5.7712 1.4029 18 6 -1.5540 -6.3405 2.3093 19 8 -1.6563 -5.8608 3.4226 20 6 -2.3237 -7.5408 1.9526 21 6 -3.1727 -8.2003 2.7832 22 6 -3.7097 -9.3169 2.0091 23 6 -4.6104 -10.3510 2.2622 24 7 -4.8876 -11.2297 1.3215 25 6 -4.3356 -11.1726 0.1203 26 6 -3.4351 -10.1852 -0.2137 27 6 -3.1017 -9.2264 0.7393 28 8 -2.2873 -8.1589 0.7525 29 6 0.1077 -4.5529 1.6194 30 6 1.2163 -4.7473 0.6142 31 1 1.8479 -5.5839 0.9131 32 1 -0.4850 0.8400 -0.0004 33 1 0.3556 -2.3880 0.0068 34 1 2.0364 -3.3673 -2.1565 35 1 3.3781 -4.3937 -1.5700 36 1 1.9964 -6.3193 -1.4067 37 1 1.0326 -5.4561 -2.6513 38 1 0.0221 -7.1970 0.0100 39 1 -1.4557 -6.3396 -0.5216 40 1 -3.4050 -7.9489 3.8076 41 1 -5.0810 -10.4313 3.2309 42 1 -4.5969 -11.9186 -0.6156 43 1 -2.9952 -10.1548 -1.1996 44 1 0.5040 -4.5308 2.6345 45 1 -0.4556 -3.6448 1.4049 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001026305132.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:29 Heat of formation + Delta-G solvation = 45.120211 kcal Electronic energy + Delta-G solvation = -29228.179012 eV Core-core repulsion = 25213.223227 eV Total energy + Delta-G solvation = -4014.955785 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 1.56 seconds Orbital eigenvalues (eV) -43.05171 -40.57239 -39.39387 -38.59993 -35.38351 -33.43468 -33.28613 -32.11636 -30.92198 -30.59345 -29.28764 -28.58578 -25.80024 -24.97352 -23.89376 -23.36172 -22.97933 -21.91545 -20.27982 -20.01576 -18.98961 -18.34902 -17.79335 -17.55201 -16.89458 -16.37133 -16.01508 -15.80230 -15.28667 -14.94630 -14.83649 -14.44887 -14.39772 -14.06016 -13.88836 -13.68392 -13.67242 -13.41380 -12.94447 -12.72255 -12.42368 -12.01838 -11.91675 -11.59284 -11.28492 -11.04437 -10.86719 -10.75200 -10.70649 -10.59052 -10.30369 -10.26967 -10.13809 -10.13273 -9.81221 -9.68486 -9.64063 -8.96589 -8.89888 -8.59885 -7.02283 -5.81210 -3.10610 0.07372 0.83280 1.41955 1.98639 2.73684 2.97169 3.32969 3.41612 3.46602 3.47365 3.82460 3.96884 4.06039 4.22159 4.45635 4.55660 4.56143 4.74378 4.87393 4.96603 5.09090 5.24222 5.27180 5.30429 5.39384 5.45986 5.49795 5.57162 5.58791 5.71728 5.74672 5.77868 5.85359 5.92905 5.95423 6.03683 6.16595 6.20892 6.31386 6.36462 6.46489 6.50227 6.60261 6.76239 6.99865 7.32797 7.48545 7.66789 7.86378 8.37022 9.48425 10.03850 10.38307 11.41081 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.021282 B = 0.002440 C = 0.002307 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1315.348826 B =11471.773628 C =12134.270137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.011 4.011 3 Si 0.906 3.094 4 H -0.286 1.286 5 H -0.292 1.292 6 H -0.286 1.286 7 C -0.242 4.242 8 H 0.071 0.929 9 N -0.718 5.718 10 C 0.195 3.805 11 H 0.058 0.942 12 C -0.145 4.145 13 C -0.095 4.095 14 C -0.129 4.129 15 H 0.091 0.909 16 C 0.123 3.877 17 N -0.610 5.610 18 C 0.608 3.392 19 O -0.515 6.515 20 C -0.010 4.010 21 C -0.104 4.104 22 C -0.198 4.198 23 C 0.174 3.826 24 N -0.495 5.495 25 C 0.115 3.885 26 C -0.159 4.159 27 C 0.101 3.899 28 O -0.172 6.172 29 C 0.132 3.868 30 C -0.121 4.121 31 H 0.076 0.924 32 H 0.256 0.744 33 H 0.384 0.616 34 H 0.076 0.924 35 H 0.054 0.946 36 H 0.061 0.939 37 H 0.062 0.938 38 H 0.070 0.930 39 H 0.075 0.925 40 H 0.177 0.823 41 H 0.167 0.833 42 H 0.169 0.831 43 H 0.147 0.853 44 H 0.082 0.918 45 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.458 -22.737 -0.801 23.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.207 4.207 3 Si 0.737 3.263 4 H -0.213 1.213 5 H -0.218 1.218 6 H -0.212 1.212 7 C -0.373 4.373 8 H 0.089 0.911 9 N -0.359 5.359 10 C 0.083 3.917 11 H 0.076 0.924 12 C -0.186 4.186 13 C -0.133 4.133 14 C -0.148 4.148 15 H 0.109 0.891 16 C 0.002 3.998 17 N -0.343 5.343 18 C 0.394 3.606 19 O -0.393 6.393 20 C -0.060 4.060 21 C -0.126 4.126 22 C -0.201 4.201 23 C 0.010 3.990 24 N -0.205 5.205 25 C -0.035 4.035 26 C -0.180 4.180 27 C 0.045 3.955 28 O -0.072 6.072 29 C 0.012 3.988 30 C -0.141 4.141 31 H 0.094 0.906 32 H 0.066 0.934 33 H 0.218 0.782 34 H 0.095 0.905 35 H 0.072 0.928 36 H 0.080 0.920 37 H 0.080 0.920 38 H 0.089 0.911 39 H 0.093 0.907 40 H 0.194 0.806 41 H 0.184 0.816 42 H 0.186 0.814 43 H 0.165 0.835 44 H 0.101 0.899 45 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -5.837 -22.908 -0.265 23.642 hybrid contribution 0.659 1.572 -0.296 1.730 sum -5.178 -21.336 -0.562 21.963 Atomic orbital electron populations 1.69632 1.05108 1.25898 1.57379 1.24736 0.95484 0.97701 1.02804 0.86283 0.78536 0.83604 0.77829 1.21306 1.21755 1.21249 1.19196 0.91001 0.84030 1.43086 0.91128 1.42429 1.05663 0.99564 1.88279 1.20136 0.94046 0.85226 0.92253 0.92375 1.23865 0.97923 0.96098 1.00684 1.21705 0.95414 0.98668 0.97496 1.22254 0.96943 0.98616 0.97011 0.89093 1.21348 1.00075 0.97401 0.80991 1.49793 1.42335 1.29209 1.12960 1.16202 0.79084 0.81014 0.84260 1.90913 1.65609 1.62440 1.20323 1.22240 1.02786 0.97141 0.83845 1.22676 0.96254 0.92939 1.00771 1.20970 1.03687 1.00352 0.95140 1.22470 0.91157 0.86994 0.98363 1.67815 1.25061 1.25982 1.01637 1.22618 0.91452 0.95719 0.93664 1.21066 1.02495 0.94584 0.99828 1.19927 0.91272 0.88568 0.95738 1.84119 1.54682 1.34730 1.33665 1.21566 0.90935 0.86323 0.99972 1.22512 0.96186 1.00740 0.94684 0.90573 0.93395 0.78155 0.90488 0.92753 0.92043 0.91965 0.91125 0.90704 0.80597 0.81601 0.81355 0.83510 0.89941 0.89023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.33 13.06 55.49 0.72 -26.60 16 2 C -0.01 -0.31 5.50 -17.43 -0.10 -0.40 16 3 Si 0.91 21.90 29.55 -169.99 -5.02 16.88 16 4 H -0.29 -6.81 7.11 56.52 0.40 -6.40 16 5 H -0.29 -7.17 7.11 56.52 0.40 -6.76 16 6 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 7 C -0.24 -6.37 9.96 -15.06 -0.15 -6.52 16 8 H 0.07 1.81 7.83 -52.49 -0.41 1.39 16 9 N -0.72 -16.60 4.80 -53.20 -0.26 -16.86 16 10 C 0.19 3.51 3.46 -67.70 -0.23 3.28 16 11 H 0.06 1.07 8.09 -51.93 -0.42 0.65 16 12 C -0.14 -2.27 6.73 -23.33 -0.16 -2.43 16 13 C -0.09 -1.20 6.71 -25.91 -0.17 -1.37 16 14 C -0.13 -1.79 2.73 -90.27 -0.25 -2.04 16 15 H 0.09 1.49 7.64 -51.93 -0.40 1.09 16 16 C 0.12 1.56 5.43 -3.86 -0.02 1.54 16 17 N -0.61 -9.12 3.43 -172.99 -0.59 -9.71 16 18 C 0.61 9.43 7.86 -12.71 -0.10 9.33 16 19 O -0.51 -9.37 17.16 5.24 0.09 -9.28 16 20 C -0.01 -0.14 6.92 -36.89 -0.26 -0.39 16 21 C -0.10 -1.17 10.80 -37.29 -0.40 -1.57 16 22 C -0.20 -2.06 6.43 -105.22 -0.68 -2.73 16 23 C 0.17 1.54 11.28 -17.17 -0.19 1.35 16 24 N -0.49 -4.62 10.35 -13.00 -0.13 -4.76 16 25 C 0.12 0.87 11.13 -17.52 -0.20 0.67 16 26 C -0.16 -1.28 10.13 -39.39 -0.40 -1.68 16 27 C 0.10 1.08 7.48 -38.13 -0.29 0.79 16 28 O -0.17 -2.06 8.16 3.71 0.03 -2.03 16 29 C 0.13 2.18 6.53 -3.31 -0.02 2.16 16 30 C -0.12 -1.85 2.60 -90.34 -0.23 -2.09 16 31 H 0.08 1.06 8.13 -51.93 -0.42 0.64 16 32 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 33 H 0.38 9.48 6.19 -40.82 -0.25 9.22 16 34 H 0.08 1.40 7.98 -51.93 -0.41 0.99 16 35 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 38 H 0.07 0.80 8.09 -51.93 -0.42 0.38 16 39 H 0.07 0.91 7.39 -51.93 -0.38 0.53 16 40 H 0.18 1.66 8.06 -52.48 -0.42 1.24 16 41 H 0.17 0.99 8.06 -52.49 -0.42 0.56 16 42 H 0.17 0.71 8.06 -52.49 -0.42 0.29 16 43 H 0.15 0.82 8.06 -52.49 -0.42 0.40 16 44 H 0.08 1.40 8.09 -51.93 -0.42 0.97 16 45 H 0.09 1.75 6.96 -51.93 -0.36 1.39 16 LS Contribution 370.83 15.07 5.59 5.59 Total: -1.00 -31.39 370.83 -9.41 -40.80 By element: Atomic # 1 Polarization: 14.09 SS G_CDS: -6.00 Total: 8.09 kcal Atomic # 6 Polarization: 1.73 SS G_CDS: -3.84 Total: -2.11 kcal Atomic # 7 Polarization: -57.67 SS G_CDS: -0.26 Total: -57.93 kcal Atomic # 8 Polarization: -11.44 SS G_CDS: 0.12 Total: -11.32 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.88 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -31.39 -9.41 -40.80 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026305132.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.917 kcal (2) G-P(sol) polarization free energy of solvation -31.386 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.531 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.411 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.797 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.120 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.56 seconds