Wall clock time and date at job start Sat Apr 11 2020 06:18:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86797 * 120.00112 * 2 1 4 4 H 1.48502 * 109.46929 * 239.99999 * 3 2 1 5 5 H 1.48499 * 109.46908 * 359.97438 * 3 2 1 6 6 H 1.48490 * 109.47216 * 119.99748 * 3 2 1 7 7 C 1.38811 * 119.99605 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99477 * 179.97438 * 7 2 1 9 9 N 1.36932 * 120.00602 * 0.02562 * 7 2 1 10 10 C 1.46494 * 120.00529 * 179.97438 * 9 7 2 11 11 H 1.09000 * 110.40756 * 32.52912 * 10 9 7 12 12 C 1.54832 * 110.46003 * 269.92912 * 10 9 7 13 13 C 1.54836 * 102.73246 * 203.05303 * 12 10 9 14 14 C 1.54135 * 104.34771 * 38.22877 * 13 12 10 15 15 H 1.08999 * 112.65770 * 99.31722 * 14 13 12 16 16 C 1.54464 * 108.80182 * 224.03805 * 14 13 12 17 17 N 1.48341 * 104.31037 * 138.54457 * 16 14 13 18 18 C 1.34776 * 128.19908 * 138.19968 * 17 16 14 19 19 O 1.21655 * 119.99486 * 180.02562 * 18 17 16 20 20 C 1.46979 * 120.00269 * 0.02562 * 18 17 16 21 21 C 1.35843 * 125.12208 * 179.97438 * 20 18 17 22 22 C 1.46102 * 106.06683 * 180.02562 * 21 20 18 23 23 C 1.39455 * 135.07328 * 180.02562 * 22 21 20 24 24 N 1.31679 * 120.07278 * 179.97438 * 23 22 21 25 25 C 1.32300 * 122.14244 * 0.02562 * 24 23 22 26 26 C 1.37759 * 121.58569 * 0.02606 * 25 24 23 27 27 C 1.39244 * 118.95286 * 359.93140 * 26 25 24 28 28 O 1.34272 * 134.37370 * 180.02562 * 27 26 25 29 29 C 1.48344 * 103.60322 * 318.45731 * 17 16 14 30 30 C 1.54095 * 104.48595 * 41.51309 * 29 17 16 31 31 H 1.09006 * 111.77975 * 96.49207 * 30 29 17 32 32 H 0.97006 * 119.99821 * 0.02562 * 1 2 3 33 33 H 0.97007 * 119.99460 * 0.02562 * 9 7 2 34 34 H 1.09007 * 110.76119 * 321.36419 * 12 10 9 35 35 H 1.09000 * 110.76427 * 84.74206 * 12 10 9 36 36 H 1.08995 * 110.45629 * 279.50822 * 13 12 10 37 37 H 1.09002 * 110.45684 * 156.94346 * 13 12 10 38 38 H 1.08998 * 110.46372 * 19.83402 * 16 14 13 39 39 H 1.09005 * 110.47130 * 257.25101 * 16 14 13 40 40 H 1.07999 * 126.96498 * 0.07172 * 21 20 18 41 41 H 1.07998 * 119.96477 * 359.97438 * 23 22 21 42 42 H 1.08003 * 119.20744 * 179.97438 * 25 24 23 43 43 H 1.07996 * 120.52491 * 179.97438 * 26 25 24 44 44 H 1.08994 * 110.46500 * 160.25404 * 29 17 16 45 45 H 1.09003 * 110.46526 * 282.84306 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2852 2.7464 -0.0006 6 1 3.1039 1.6964 1.2124 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3256 -2.3881 0.0005 10 6 2.0580 -3.6568 0.0005 11 1 2.9939 -3.5553 0.5499 12 6 2.3270 -4.1264 -1.4501 13 6 2.5256 -5.6529 -1.2833 14 6 1.4936 -6.0576 -0.2123 15 1 0.5890 -6.4878 -0.6422 16 6 2.1685 -7.0182 0.7915 17 7 1.6694 -6.5743 2.1160 18 6 1.2665 -7.3355 3.1527 19 8 0.8811 -6.8096 4.1797 20 6 1.2929 -8.8009 3.0425 21 6 0.9124 -9.6651 4.0190 22 6 1.1071 -11.0055 3.4713 23 6 0.9134 -12.3031 3.9440 24 7 1.1951 -13.3344 3.1753 25 6 1.6646 -13.1892 1.9469 26 6 1.8865 -11.9437 1.4018 27 6 1.6067 -10.8138 2.1660 28 8 1.7009 -9.4910 1.9557 29 6 1.7127 -5.0942 2.0270 30 6 1.1938 -4.7778 0.6110 31 1 0.1314 -4.5341 0.6146 32 1 -0.4850 0.8401 -0.0004 33 1 0.3555 -2.3880 -0.0002 34 1 1.4697 -3.9159 -2.0897 35 1 3.2293 -3.6605 -1.8461 36 1 3.5368 -5.8702 -0.9394 37 1 2.3224 -6.1683 -2.2221 38 1 3.2530 -6.9218 0.7409 39 1 1.8670 -8.0473 0.5960 40 1 0.5405 -9.4125 5.0010 41 1 0.5320 -12.4623 4.9418 42 1 1.8800 -14.0684 1.3577 43 1 2.2707 -11.8451 0.3973 44 1 1.0617 -4.6481 2.7788 45 1 2.7350 -4.7350 2.1452 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001026305133.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:34 Heat of formation + Delta-G solvation = 30.792795 kcal Electronic energy + Delta-G solvation = -28957.476820 eV Core-core repulsion = 24941.899751 eV Total energy + Delta-G solvation = -4015.577069 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -43.13290 -40.37845 -39.39038 -38.52420 -35.33868 -33.48869 -33.34232 -32.17774 -31.05567 -30.62140 -29.35793 -28.47048 -25.71961 -24.89417 -24.06988 -23.38701 -22.88312 -22.02340 -20.61463 -19.93017 -19.14268 -18.51457 -17.94719 -17.11015 -16.96048 -16.48071 -16.16929 -15.70233 -15.67894 -15.18487 -14.92863 -14.37285 -14.31732 -14.16828 -13.82464 -13.76846 -13.69348 -13.12087 -13.05384 -12.75496 -12.47144 -12.06112 -11.81111 -11.70582 -11.26494 -11.03297 -10.82067 -10.79762 -10.74107 -10.44643 -10.43831 -10.27691 -10.21478 -10.17968 -10.00142 -9.87813 -9.69289 -9.03277 -8.91139 -8.72980 -6.99095 -5.79856 -3.09009 0.00420 0.77050 1.34357 1.89260 2.70351 2.87017 3.27107 3.42028 3.46784 3.47643 3.79786 3.91111 4.03770 4.37978 4.45488 4.51359 4.58572 4.60440 4.77093 4.85817 4.90236 5.17512 5.21742 5.24903 5.33876 5.36268 5.48934 5.52512 5.57243 5.67530 5.68403 5.78106 5.81920 5.89460 5.91627 5.98844 6.08586 6.15143 6.23108 6.33767 6.41861 6.48893 6.59594 6.74784 6.98349 7.29818 7.43054 7.66562 7.77470 8.38405 9.49630 10.06489 10.40458 11.42473 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.026461 B = 0.002240 C = 0.002112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1057.917532 B =12497.277019 C =13251.474503 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.012 4.012 3 Si 0.906 3.094 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.242 4.242 8 H 0.070 0.930 9 N -0.720 5.720 10 C 0.185 3.815 11 H 0.058 0.942 12 C -0.142 4.142 13 C -0.116 4.116 14 C -0.101 4.101 15 H 0.086 0.914 16 C 0.099 3.901 17 N -0.611 5.611 18 C 0.613 3.387 19 O -0.514 6.514 20 C -0.013 4.013 21 C -0.102 4.102 22 C -0.199 4.199 23 C 0.175 3.825 24 N -0.494 5.494 25 C 0.116 3.884 26 C -0.160 4.160 27 C 0.100 3.900 28 O -0.173 6.173 29 C 0.115 3.885 30 C -0.108 4.108 31 H 0.091 0.909 32 H 0.256 0.744 33 H 0.384 0.616 34 H 0.066 0.934 35 H 0.060 0.940 36 H 0.065 0.935 37 H 0.060 0.940 38 H 0.080 0.920 39 H 0.086 0.914 40 H 0.177 0.823 41 H 0.167 0.833 42 H 0.170 0.830 43 H 0.147 0.853 44 H 0.087 0.913 45 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.238 -26.288 2.218 26.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.208 4.208 3 Si 0.737 3.263 4 H -0.213 1.213 5 H -0.217 1.217 6 H -0.212 1.212 7 C -0.373 4.373 8 H 0.088 0.912 9 N -0.360 5.360 10 C 0.074 3.926 11 H 0.076 0.924 12 C -0.183 4.183 13 C -0.154 4.154 14 C -0.121 4.121 15 H 0.104 0.896 16 C -0.023 4.023 17 N -0.343 5.343 18 C 0.400 3.600 19 O -0.392 6.392 20 C -0.062 4.062 21 C -0.124 4.124 22 C -0.202 4.202 23 C 0.011 3.989 24 N -0.205 5.205 25 C -0.033 4.033 26 C -0.180 4.180 27 C 0.044 3.956 28 O -0.073 6.073 29 C -0.006 4.006 30 C -0.128 4.128 31 H 0.109 0.891 32 H 0.066 0.934 33 H 0.219 0.781 34 H 0.085 0.915 35 H 0.079 0.921 36 H 0.083 0.917 37 H 0.079 0.921 38 H 0.098 0.902 39 H 0.104 0.896 40 H 0.194 0.806 41 H 0.184 0.816 42 H 0.187 0.813 43 H 0.165 0.835 44 H 0.106 0.894 45 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 4.111 -26.586 2.881 27.056 hybrid contribution 0.255 1.747 -0.412 1.813 sum 4.366 -24.839 2.469 25.340 Atomic orbital electron populations 1.69648 1.05111 1.25843 1.57369 1.24747 0.95504 0.97724 1.02851 0.86281 0.78544 0.83595 0.77836 1.21286 1.21719 1.21241 1.19179 0.90938 0.84089 1.43078 0.91220 1.42437 1.05724 0.99674 1.88172 1.21124 0.93717 0.85145 0.92652 0.92389 1.23227 1.01579 0.92712 1.00768 1.22387 0.97625 0.97907 0.97476 1.22747 0.98815 0.95124 0.95396 0.89601 1.23005 0.98905 0.99328 0.81049 1.49134 1.62103 1.08921 1.14099 1.16180 0.78589 0.82105 0.83106 1.90922 1.48398 1.71247 1.28650 1.22206 1.04911 0.92629 0.86454 1.22687 1.00665 0.88624 1.00379 1.20965 1.07518 0.95863 0.95829 1.22484 0.92196 0.85093 0.99138 1.67817 1.13151 1.33632 1.05858 1.22635 0.93514 0.95764 0.91429 1.21076 1.06186 0.88915 1.01847 1.19969 0.97402 0.83436 0.94776 1.84140 1.70115 1.15447 1.37629 1.22697 1.02327 0.77028 0.98537 1.23057 1.01566 0.95282 0.92933 0.89098 0.93417 0.78144 0.91493 0.92095 0.91681 0.92125 0.90194 0.89620 0.80563 0.81567 0.81314 0.83489 0.89440 0.90015 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.65 13.06 55.49 0.72 -26.92 16 2 C -0.01 -0.34 5.50 -17.43 -0.10 -0.43 16 3 Si 0.91 22.04 29.55 -169.99 -5.02 17.02 16 4 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 5 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 6 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 7 C -0.24 -6.46 9.96 -15.06 -0.15 -6.61 16 8 H 0.07 1.80 7.83 -52.49 -0.41 1.39 16 9 N -0.72 -17.11 5.20 -51.92 -0.27 -17.38 16 10 C 0.18 3.34 3.06 -66.37 -0.20 3.14 16 11 H 0.06 1.07 7.13 -51.93 -0.37 0.70 16 12 C -0.14 -2.27 6.57 -24.80 -0.16 -2.43 16 13 C -0.12 -1.38 6.36 -25.17 -0.16 -1.54 16 14 C -0.10 -1.24 3.95 -88.15 -0.35 -1.59 16 15 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 16 C 0.10 1.11 6.26 -2.26 -0.01 1.10 16 17 N -0.61 -8.33 3.31 -170.55 -0.57 -8.89 16 18 C 0.61 8.85 7.90 -12.72 -0.10 8.75 16 19 O -0.51 -8.87 17.11 5.23 0.09 -8.78 16 20 C -0.01 -0.15 6.94 -36.90 -0.26 -0.41 16 21 C -0.10 -1.05 10.80 -37.29 -0.40 -1.46 16 22 C -0.20 -1.91 6.43 -105.22 -0.68 -2.59 16 23 C 0.17 1.44 11.28 -17.16 -0.19 1.24 16 24 N -0.49 -4.34 10.34 -13.00 -0.13 -4.47 16 25 C 0.12 0.80 11.13 -17.52 -0.20 0.61 16 26 C -0.16 -1.17 10.13 -39.38 -0.40 -1.57 16 27 C 0.10 0.99 7.48 -38.14 -0.29 0.70 16 28 O -0.17 -1.91 7.64 3.71 0.03 -1.88 16 29 C 0.12 1.72 6.57 -2.45 -0.02 1.71 16 30 C -0.11 -1.65 3.61 -88.34 -0.32 -1.97 16 31 H 0.09 1.53 7.83 -51.93 -0.41 1.12 16 32 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 33 H 0.38 9.82 7.63 -40.82 -0.31 9.51 16 34 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 35 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 36 H 0.06 0.70 7.18 -51.93 -0.37 0.33 16 37 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.08 0.82 7.20 -51.93 -0.37 0.44 16 39 H 0.09 0.89 5.45 -51.93 -0.28 0.60 16 40 H 0.18 1.53 8.06 -52.49 -0.42 1.11 16 41 H 0.17 0.89 8.06 -52.49 -0.42 0.47 16 42 H 0.17 0.61 8.06 -52.48 -0.42 0.19 16 43 H 0.15 0.71 8.06 -52.49 -0.42 0.29 16 44 H 0.09 1.46 7.88 -51.93 -0.41 1.05 16 45 H 0.08 1.19 7.19 -51.93 -0.37 0.82 16 LS Contribution 369.90 15.07 5.57 5.57 Total: -1.00 -32.16 369.90 -9.38 -41.54 By element: Atomic # 1 Polarization: 13.37 SS G_CDS: -5.83 Total: 7.54 kcal Atomic # 6 Polarization: 0.63 SS G_CDS: -3.98 Total: -3.34 kcal Atomic # 7 Polarization: -57.42 SS G_CDS: -0.25 Total: -57.67 kcal Atomic # 8 Polarization: -10.78 SS G_CDS: 0.12 Total: -10.67 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.02 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -32.16 -9.38 -41.54 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026305133.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.334 kcal (2) G-P(sol) polarization free energy of solvation -32.157 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.177 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.542 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.793 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds