Wall clock time and date at job start Sat Apr 11 2020 06:18:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31610 * 1 3 3 Si 1.86797 * 120.00150 * 2 1 4 4 H 1.48504 * 109.47081 * 270.00127 * 3 2 1 5 5 H 1.48503 * 109.46962 * 29.99951 * 3 2 1 6 6 H 1.48506 * 109.47367 * 149.99887 * 3 2 1 7 7 C 1.38820 * 120.00185 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99890 * 359.97438 * 7 2 1 9 9 N 1.36936 * 119.99969 * 180.02562 * 7 2 1 10 10 C 1.46503 * 119.99526 * 179.97438 * 9 7 2 11 11 H 1.08994 * 110.06114 * 324.58154 * 10 9 7 12 12 C 1.55900 * 110.71887 * 202.70593 * 10 9 7 13 13 C 1.54108 * 106.85596 * 241.84885 * 12 10 9 14 14 C 1.54447 * 104.73727 * 336.36941 * 13 12 10 15 15 H 1.08998 * 114.49414 * 271.97458 * 14 13 12 16 16 C 1.54656 * 108.64538 * 143.53489 * 14 13 12 17 17 N 1.47351 * 105.21867 * 288.60134 * 16 14 13 18 18 C 1.34780 * 125.70191 * 155.13411 * 17 16 14 19 19 O 1.21652 * 120.00154 * 179.97438 * 18 17 16 20 20 C 1.46979 * 120.00092 * 359.96866 * 18 17 16 21 21 C 1.35844 * 125.12152 * 179.71914 * 20 18 17 22 22 C 1.46098 * 106.06850 * 179.89761 * 21 20 18 23 23 C 1.39450 * 135.07525 * 180.02562 * 22 21 20 24 24 N 1.31677 * 120.07740 * 180.34556 * 23 22 21 25 25 C 1.32312 * 122.14271 * 0.02562 * 24 23 22 26 26 C 1.37754 * 121.57915 * 359.97438 * 25 24 23 27 27 C 1.39238 * 118.95850 * 0.03232 * 26 25 24 28 28 O 1.34281 * 134.37691 * 179.97438 * 27 26 25 29 29 C 1.47037 * 108.59715 * 335.10813 * 17 16 14 30 30 C 1.53909 * 109.91444 * 85.77777 * 10 9 7 31 31 H 1.09004 * 112.92155 * 265.08299 * 30 10 9 32 32 H 0.97000 * 120.00244 * 359.97438 * 1 2 3 33 33 H 0.96993 * 120.00255 * 359.97438 * 9 7 2 34 34 H 1.09003 * 110.11136 * 122.38850 * 12 10 9 35 35 H 1.08995 * 109.77878 * 1.12856 * 12 10 9 36 36 H 1.09000 * 110.38354 * 217.55123 * 13 12 10 37 37 H 1.09008 * 110.48057 * 95.23645 * 13 12 10 38 38 H 1.09002 * 110.31077 * 169.63233 * 16 14 13 39 39 H 1.09000 * 110.30543 * 47.56230 * 16 14 13 40 40 H 1.07994 * 126.96604 * 359.97438 * 21 20 18 41 41 H 1.08000 * 119.96324 * 0.36709 * 23 22 21 42 42 H 1.07991 * 119.20819 * 179.97438 * 25 24 23 43 43 H 1.08005 * 120.51785 * 180.02562 * 26 25 24 44 44 H 1.09001 * 109.82320 * 121.80836 * 29 17 16 45 45 H 1.09003 * 109.82791 * 242.68591 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4976 2.0464 -1.4001 5 1 1.4475 2.6526 0.7000 6 1 3.5477 1.4401 0.7001 7 6 2.0102 -1.2022 -0.0005 8 1 1.4703 -2.1375 -0.0005 9 7 3.3796 -1.2021 0.0000 10 6 4.1121 -2.4709 0.0000 11 1 3.5762 -3.2120 0.5930 12 6 5.5526 -2.2762 0.5635 13 6 6.5294 -2.6463 -0.5696 14 6 5.7232 -3.5872 -1.4917 15 1 5.7723 -4.6407 -1.2165 16 6 6.1252 -3.3058 -2.9583 17 7 5.5392 -1.9913 -3.2746 18 6 5.9862 -1.1370 -4.2163 19 8 5.4207 -0.0742 -4.3911 20 6 7.1570 -1.4893 -5.0320 21 6 7.6908 -0.7119 -6.0099 22 6 8.8304 -1.4559 -6.5410 23 6 9.7823 -1.2276 -7.5342 24 7 10.7075 -2.1313 -7.7818 25 6 10.7740 -3.2718 -7.1144 26 6 9.8738 -3.5779 -6.1176 27 6 8.8715 -2.6617 -5.8097 28 8 7.8608 -2.6371 -4.9261 29 6 4.3850 -1.7677 -2.3916 30 6 4.2824 -2.9779 -1.4432 31 1 3.5078 -3.6855 -1.7388 32 1 -0.4850 0.8400 0.0004 33 1 3.8646 -0.3622 0.0004 34 1 5.7111 -2.9299 1.4212 35 1 5.6969 -1.2361 0.8556 36 1 7.3998 -3.1639 -0.1664 37 1 6.8379 -1.7537 -1.1140 38 1 5.7146 -4.0714 -3.6167 39 1 7.2104 -3.2689 -3.0527 40 1 7.3439 0.2597 -6.3290 41 1 9.7609 -0.3084 -8.1008 42 1 11.5526 -3.9797 -7.3569 43 1 9.9442 -4.5139 -5.5834 44 1 4.5334 -0.8560 -1.8130 45 1 3.4752 -1.6842 -2.9862 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001026305134.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:40 Heat of formation + Delta-G solvation = 39.480295 kcal Electronic energy + Delta-G solvation = -29749.789757 eV Core-core repulsion = 25734.589406 eV Total energy + Delta-G solvation = -4015.200350 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 2.40 seconds Orbital eigenvalues (eV) -43.07360 -40.50551 -39.36725 -38.44976 -35.31317 -33.47074 -33.27865 -32.11758 -31.22664 -30.52006 -29.24790 -28.79416 -26.04802 -25.02762 -23.98359 -23.23841 -22.71099 -21.96348 -20.32416 -20.01844 -18.94370 -18.42249 -17.91733 -17.81157 -16.93514 -16.34312 -16.11659 -15.79169 -15.45145 -14.89853 -14.87030 -14.75944 -14.09922 -14.07343 -13.81469 -13.60814 -13.55977 -13.49798 -12.85022 -12.77743 -12.53139 -12.34727 -11.98559 -11.93244 -11.25549 -10.90353 -10.83505 -10.75675 -10.68663 -10.54480 -10.46964 -10.30722 -10.27433 -10.14135 -9.98097 -9.82595 -9.61122 -8.95130 -8.87920 -8.50261 -7.32293 -5.81155 -3.17998 0.06462 0.81511 1.41864 1.97377 2.88109 2.98894 3.31407 3.37347 3.41433 3.47807 3.87418 3.96240 4.10529 4.41863 4.44473 4.53724 4.56936 4.67520 4.71869 4.87108 4.96107 5.22372 5.26177 5.29828 5.36293 5.39374 5.41655 5.45100 5.55420 5.56659 5.73752 5.76882 5.78765 5.87597 5.92785 5.96971 6.05636 6.10919 6.25132 6.39537 6.44958 6.48974 6.56881 6.63381 6.76863 7.41648 7.47027 7.93261 7.94364 8.37899 9.14971 9.87905 10.05698 11.36718 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.018546 B = 0.002955 C = 0.002687 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1509.385756 B = 9474.349320 C =10419.514892 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.011 3.989 3 Si 0.877 3.123 4 H -0.280 1.280 5 H -0.290 1.290 6 H -0.278 1.278 7 C -0.249 4.249 8 H 0.092 0.908 9 N -0.742 5.742 10 C 0.187 3.813 11 H 0.064 0.936 12 C -0.132 4.132 13 C -0.114 4.114 14 C -0.104 4.104 15 H 0.105 0.895 16 C 0.102 3.898 17 N -0.601 5.601 18 C 0.602 3.398 19 O -0.510 6.510 20 C -0.010 4.010 21 C -0.105 4.105 22 C -0.197 4.197 23 C 0.174 3.826 24 N -0.495 5.495 25 C 0.115 3.885 26 C -0.160 4.160 27 C 0.099 3.901 28 O -0.173 6.173 29 C 0.127 3.873 30 C -0.116 4.116 31 H 0.089 0.911 32 H 0.260 0.740 33 H 0.362 0.638 34 H 0.066 0.934 35 H 0.064 0.936 36 H 0.062 0.938 37 H 0.063 0.937 38 H 0.069 0.931 39 H 0.081 0.919 40 H 0.176 0.824 41 H 0.167 0.833 42 H 0.169 0.831 43 H 0.147 0.853 44 H 0.085 0.915 45 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.244 -9.803 -10.852 26.620 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.186 4.186 3 Si 0.707 3.293 4 H -0.206 1.206 5 H -0.217 1.217 6 H -0.204 1.204 7 C -0.378 4.378 8 H 0.109 0.891 9 N -0.385 5.385 10 C 0.076 3.924 11 H 0.082 0.918 12 C -0.170 4.170 13 C -0.152 4.152 14 C -0.124 4.124 15 H 0.123 0.877 16 C -0.021 4.021 17 N -0.333 5.333 18 C 0.388 3.612 19 O -0.387 6.387 20 C -0.060 4.060 21 C -0.127 4.127 22 C -0.200 4.200 23 C 0.010 3.990 24 N -0.205 5.205 25 C -0.035 4.035 26 C -0.180 4.180 27 C 0.043 3.957 28 O -0.073 6.073 29 C 0.006 3.994 30 C -0.138 4.138 31 H 0.108 0.892 32 H 0.070 0.930 33 H 0.196 0.804 34 H 0.084 0.916 35 H 0.083 0.917 36 H 0.081 0.919 37 H 0.081 0.919 38 H 0.087 0.913 39 H 0.099 0.901 40 H 0.194 0.806 41 H 0.184 0.816 42 H 0.186 0.814 43 H 0.164 0.836 44 H 0.103 0.897 45 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 22.219 -9.336 -11.368 26.647 hybrid contribution -0.119 1.084 0.535 1.215 sum 22.099 -8.252 -10.833 25.958 Atomic orbital electron populations 1.69686 1.05122 1.25932 1.56970 1.24649 0.95164 0.97135 1.01607 0.86673 0.79199 0.85248 0.78193 1.20616 1.21678 1.20387 1.19032 0.80390 0.94681 1.43742 0.89059 1.42958 1.04175 1.01807 1.89517 1.21048 0.90486 0.89237 0.91600 0.91754 1.22774 0.95110 1.01635 0.97524 1.22218 0.97521 0.98743 0.96696 1.23259 0.96342 0.99857 0.92905 0.87651 1.22428 0.98636 0.84325 0.96686 1.48537 1.31512 1.18343 1.34896 1.16241 0.81580 0.83822 0.79541 1.90945 1.56828 1.22691 1.68234 1.22291 0.96464 0.86025 1.01176 1.22683 0.93803 1.00918 0.95296 1.20970 1.00402 0.96494 1.02181 1.22475 0.87192 0.97607 0.91698 1.67815 1.22776 1.02650 1.27234 1.22618 0.96546 0.93831 0.90499 1.21054 0.94643 1.00354 1.01974 1.19958 0.89871 0.95940 0.89932 1.84160 1.35628 1.37362 1.50127 1.22062 0.86495 1.00080 0.90748 1.23626 0.95255 0.95770 0.99125 0.89241 0.92976 0.80448 0.91565 0.91732 0.91950 0.91860 0.91291 0.90130 0.80614 0.81600 0.81374 0.83561 0.89717 0.90904 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.80 13.97 55.49 0.78 -28.03 16 2 C 0.01 0.31 5.50 -17.43 -0.10 0.22 16 3 Si 0.88 22.19 27.74 -169.99 -4.71 17.47 16 4 H -0.28 -7.24 7.11 56.52 0.40 -6.84 16 5 H -0.29 -7.46 7.11 56.52 0.40 -7.06 16 6 H -0.28 -6.61 6.52 56.52 0.37 -6.24 16 7 C -0.25 -6.68 10.44 -15.06 -0.16 -6.84 16 8 H 0.09 2.62 8.06 -52.49 -0.42 2.19 16 9 N -0.74 -16.45 3.41 -51.47 -0.18 -16.63 16 10 C 0.19 3.23 3.34 -65.91 -0.22 3.01 16 11 H 0.06 1.14 8.10 -51.93 -0.42 0.72 16 12 C -0.13 -1.87 6.64 -24.60 -0.16 -2.03 16 13 C -0.11 -1.38 5.85 -25.39 -0.15 -1.53 16 14 C -0.10 -1.21 4.29 -87.10 -0.37 -1.58 16 15 H 0.11 0.98 8.14 -51.93 -0.42 0.56 16 16 C 0.10 1.20 5.40 -2.71 -0.01 1.18 16 17 N -0.60 -9.16 2.84 -172.30 -0.49 -9.64 16 18 C 0.60 9.74 7.83 -12.72 -0.10 9.64 16 19 O -0.51 -10.02 17.15 5.23 0.09 -9.93 16 20 C -0.01 -0.13 6.89 -36.90 -0.25 -0.39 16 21 C -0.11 -1.21 10.80 -37.29 -0.40 -1.61 16 22 C -0.20 -2.06 6.43 -105.22 -0.68 -2.74 16 23 C 0.17 1.55 11.28 -17.17 -0.19 1.36 16 24 N -0.49 -4.59 10.34 -13.00 -0.13 -4.73 16 25 C 0.11 0.84 11.13 -17.52 -0.20 0.65 16 26 C -0.16 -1.24 10.13 -39.39 -0.40 -1.64 16 27 C 0.10 1.04 7.48 -38.13 -0.29 0.75 16 28 O -0.17 -2.02 7.66 3.67 0.03 -2.00 16 29 C 0.13 2.25 5.39 -3.18 -0.02 2.23 16 30 C -0.12 -1.77 3.92 -87.69 -0.34 -2.11 16 31 H 0.09 1.37 8.14 -51.93 -0.42 0.95 16 32 H 0.26 7.74 8.31 -40.82 -0.34 7.40 16 33 H 0.36 8.16 4.74 -40.82 -0.19 7.96 16 34 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 35 H 0.06 1.00 7.68 -51.93 -0.40 0.60 16 36 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.06 0.86 7.30 -51.92 -0.38 0.48 16 38 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 39 H 0.08 0.87 6.09 -51.93 -0.32 0.56 16 40 H 0.18 1.77 8.06 -52.49 -0.42 1.35 16 41 H 0.17 1.02 8.06 -52.49 -0.42 0.60 16 42 H 0.17 0.67 8.06 -52.49 -0.42 0.25 16 43 H 0.15 0.75 8.06 -52.48 -0.42 0.33 16 44 H 0.08 1.71 6.16 -51.93 -0.32 1.39 16 45 H 0.07 1.45 8.14 -51.93 -0.42 1.03 16 LS Contribution 364.09 15.07 5.49 5.49 Total: -1.00 -33.26 364.09 -9.02 -42.28 By element: Atomic # 1 Polarization: 12.99 SS G_CDS: -5.85 Total: 7.15 kcal Atomic # 6 Polarization: 2.61 SS G_CDS: -4.04 Total: -1.43 kcal Atomic # 7 Polarization: -59.01 SS G_CDS: -0.02 Total: -59.03 kcal Atomic # 8 Polarization: -12.05 SS G_CDS: 0.12 Total: -11.93 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -4.71 Total: 17.47 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -33.26 -9.02 -42.28 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026305134.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.762 kcal (2) G-P(sol) polarization free energy of solvation -33.261 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.021 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.282 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.40 seconds