Wall clock time and date at job start Sat Apr 11 2020 06:18:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86798 * 119.99966 * 2 1 4 4 H 1.48500 * 109.47069 * 269.99784 * 3 2 1 5 5 H 1.48501 * 109.47453 * 29.99772 * 3 2 1 6 6 H 1.48504 * 109.47182 * 150.00248 * 3 2 1 7 7 C 1.38814 * 120.00146 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99916 * 179.97438 * 7 2 1 9 9 N 1.36935 * 119.99796 * 0.02562 * 7 2 1 10 10 C 1.46500 * 120.00256 * 179.97438 * 9 7 2 11 11 H 1.09003 * 110.46520 * 36.18643 * 10 9 7 12 12 C 1.56001 * 110.52642 * 273.55063 * 10 9 7 13 13 C 1.56338 * 105.76500 * 234.41224 * 12 10 9 14 14 C 1.51556 * 101.81922 * 334.56056 * 13 12 10 15 15 H 1.09001 * 111.11461 * 287.81170 * 14 13 12 16 16 C 1.51514 * 123.35630 * 152.01951 * 14 13 12 17 17 N 1.49626 * 102.49347 * 207.63352 * 16 14 13 18 18 C 1.34776 * 126.07349 * 205.39445 * 17 16 14 19 19 O 1.21650 * 120.00393 * 180.02562 * 18 17 16 20 20 C 1.46983 * 120.00061 * 0.02562 * 18 17 16 21 21 C 1.35850 * 125.12166 * 180.02562 * 20 18 17 22 22 C 1.46094 * 106.06804 * 179.97438 * 21 20 18 23 23 C 1.39451 * 135.07464 * 179.97438 * 22 21 20 24 24 N 1.31679 * 120.07614 * 180.02562 * 23 22 21 25 25 C 1.32312 * 122.14227 * 359.97438 * 24 23 22 26 26 C 1.37759 * 121.58264 * 0.03062 * 25 24 23 27 27 C 1.39242 * 118.95494 * 359.95052 * 26 25 24 28 28 O 1.34274 * 134.37850 * 180.32002 * 27 26 25 29 29 C 1.49283 * 107.85830 * 25.65372 * 17 16 14 30 30 C 1.49722 * 104.67493 * 6.38476 * 29 17 16 31 31 H 1.09007 * 107.85968 * 78.31269 * 30 29 17 32 32 H 0.96998 * 119.99824 * 0.02562 * 1 2 3 33 33 H 0.97001 * 120.00136 * 359.97438 * 9 7 2 34 34 H 1.08996 * 110.19105 * 115.33616 * 12 10 9 35 35 H 1.09004 * 110.19047 * 353.48248 * 12 10 9 36 36 H 1.09001 * 110.95616 * 216.43088 * 13 12 10 37 37 H 1.08998 * 110.96155 * 92.69140 * 13 12 10 38 38 H 1.09002 * 110.80499 * 89.38333 * 16 14 13 39 39 H 1.08998 * 110.97356 * 325.96146 * 16 14 13 40 40 H 1.08000 * 126.96582 * 359.95740 * 21 20 18 41 41 H 1.07998 * 119.96401 * 359.97272 * 23 22 21 42 42 H 1.08001 * 119.20946 * 180.02562 * 25 24 23 43 43 H 1.07995 * 120.52105 * 179.97438 * 26 25 24 44 44 H 1.09000 * 110.40045 * 125.17783 * 29 17 16 45 45 H 1.09000 * 110.40310 * 247.59188 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5478 1.4402 0.7000 7 6 2.0103 -1.2022 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3256 -2.3880 0.0005 10 6 2.0580 -3.6568 0.0005 11 1 2.9624 -3.5748 0.6035 12 6 2.4099 -4.0853 -1.4576 13 6 1.8415 -5.5322 -1.6240 14 6 1.8307 -6.0280 -0.1919 15 1 2.8423 -6.2242 0.1634 16 6 0.8597 -7.0719 0.3210 17 7 0.7488 -6.7256 1.7724 18 6 0.4175 -7.5724 2.7672 19 8 0.3596 -7.1706 3.9140 20 6 0.1261 -8.9813 2.4666 21 6 -0.2175 -9.9215 3.3850 22 6 -0.4109 -11.1631 2.6398 23 6 -0.7629 -12.4705 2.9737 24 7 -0.8542 -13.3895 2.0350 25 6 -0.6217 -13.1197 0.7608 26 6 -0.2687 -11.8551 0.3438 27 6 -0.1563 -10.8400 1.2903 28 8 0.1525 -9.5345 1.2350 29 6 1.0642 -5.2742 1.9221 30 6 1.1986 -4.7686 0.5192 31 1 0.1953 -4.6310 0.1158 32 1 -0.4850 0.8400 -0.0004 33 1 0.3556 -2.3880 0.0005 34 1 3.4906 -4.0871 -1.5988 35 1 1.9375 -3.4111 -2.1722 36 1 2.5008 -6.1412 -2.2425 37 1 0.8329 -5.5099 -2.0365 38 1 1.2661 -8.0751 0.1923 39 1 -0.1075 -6.9816 -0.1735 40 1 -0.3256 -9.7799 4.4502 41 1 -0.9600 -12.7298 4.0034 42 1 -0.7108 -13.9099 0.0300 43 1 -0.0824 -11.6541 -0.7008 44 1 0.2515 -4.7597 2.4349 45 1 2.0005 -5.1427 2.4644 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001026305135.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:44 Heat of formation + Delta-G solvation = 45.058522 kcal Electronic energy + Delta-G solvation = -28898.896589 eV Core-core repulsion = 24883.938128 eV Total energy + Delta-G solvation = -4014.958460 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -43.12512 -40.61065 -39.44044 -38.66604 -35.50840 -33.51687 -33.35318 -32.17867 -30.99145 -30.69609 -29.44425 -28.55539 -25.84182 -24.99164 -23.96500 -23.26871 -22.92867 -21.98505 -20.43648 -20.22178 -19.23108 -18.41114 -17.94696 -17.12451 -16.96697 -16.62290 -16.22218 -15.85397 -15.30903 -15.03968 -14.91572 -14.79865 -14.11714 -14.02253 -13.92938 -13.84367 -13.65901 -13.54657 -12.99332 -12.73693 -12.45365 -12.03944 -11.99097 -11.60701 -11.49107 -11.17548 -10.87364 -10.82748 -10.81463 -10.54662 -10.35648 -10.22684 -10.17840 -10.17127 -9.87206 -9.81268 -9.63882 -9.00717 -8.95149 -8.70100 -7.02053 -5.81223 -3.10711 0.00881 0.77607 1.34756 1.90282 2.62451 2.87378 3.27590 3.40884 3.46524 3.48065 3.75466 3.91293 4.00100 4.13299 4.39597 4.48387 4.53636 4.65386 4.82947 4.89771 4.94273 5.18549 5.18712 5.23597 5.29158 5.34572 5.47143 5.50468 5.54168 5.65637 5.67993 5.78759 5.81147 5.87511 5.90144 5.96671 6.04003 6.07681 6.28230 6.28414 6.40865 6.43791 6.56763 6.73106 7.00073 7.20399 7.43518 7.66946 7.75780 8.36853 9.48343 10.04165 10.38635 11.41142 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.026061 B = 0.002207 C = 0.002091 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1074.147072 B =12682.522263 C =13389.140948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.012 4.012 3 Si 0.907 3.093 4 H -0.290 1.290 5 H -0.292 1.292 6 H -0.282 1.282 7 C -0.241 4.241 8 H 0.071 0.929 9 N -0.720 5.720 10 C 0.200 3.800 11 H 0.053 0.947 12 C -0.142 4.142 13 C -0.099 4.099 14 C -0.125 4.125 15 H 0.087 0.913 16 C 0.116 3.884 17 N -0.611 5.611 18 C 0.609 3.391 19 O -0.515 6.515 20 C -0.013 4.013 21 C -0.102 4.102 22 C -0.199 4.199 23 C 0.175 3.825 24 N -0.495 5.495 25 C 0.116 3.884 26 C -0.160 4.160 27 C 0.100 3.900 28 O -0.173 6.173 29 C 0.135 3.865 30 C -0.122 4.122 31 H 0.076 0.924 32 H 0.255 0.745 33 H 0.384 0.616 34 H 0.055 0.945 35 H 0.075 0.925 36 H 0.061 0.939 37 H 0.067 0.933 38 H 0.084 0.916 39 H 0.077 0.923 40 H 0.177 0.823 41 H 0.167 0.833 42 H 0.170 0.830 43 H 0.147 0.853 44 H 0.082 0.918 45 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.137 -26.140 0.177 26.141 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.208 4.208 3 Si 0.738 3.262 4 H -0.217 1.217 5 H -0.218 1.218 6 H -0.207 1.207 7 C -0.372 4.372 8 H 0.089 0.911 9 N -0.361 5.361 10 C 0.089 3.911 11 H 0.071 0.929 12 C -0.183 4.183 13 C -0.138 4.138 14 C -0.145 4.145 15 H 0.106 0.894 16 C -0.005 4.005 17 N -0.344 5.344 18 C 0.395 3.605 19 O -0.392 6.392 20 C -0.062 4.062 21 C -0.124 4.124 22 C -0.202 4.202 23 C 0.011 3.989 24 N -0.205 5.205 25 C -0.034 4.034 26 C -0.180 4.180 27 C 0.045 3.955 28 O -0.073 6.073 29 C 0.015 3.985 30 C -0.142 4.142 31 H 0.095 0.905 32 H 0.065 0.935 33 H 0.218 0.782 34 H 0.074 0.926 35 H 0.094 0.906 36 H 0.080 0.920 37 H 0.085 0.915 38 H 0.102 0.898 39 H 0.095 0.905 40 H 0.194 0.806 41 H 0.184 0.816 42 H 0.187 0.813 43 H 0.165 0.835 44 H 0.100 0.900 45 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 0.040 -26.471 0.783 26.482 hybrid contribution 0.291 1.764 -0.307 1.814 sum 0.331 -24.707 0.476 24.714 Atomic orbital electron populations 1.69655 1.05120 1.25742 1.57467 1.24752 0.95508 0.97743 1.02844 0.86201 0.78692 0.83856 0.77492 1.21734 1.21790 1.20732 1.19225 0.91018 0.84012 1.42927 0.91101 1.42487 1.05671 0.99620 1.88285 1.19920 0.93772 0.84766 0.92665 0.92866 1.23778 0.99878 0.94156 1.00472 1.21850 1.01339 0.97106 0.93474 1.22566 0.98989 0.94870 0.98051 0.89438 1.21941 0.99968 0.99010 0.79601 1.49781 1.66402 1.10680 1.07508 1.16223 0.78225 0.81528 0.84509 1.90916 1.53521 1.75431 1.19365 1.22186 1.07171 0.94681 0.82190 1.22681 1.00033 0.88936 1.00743 1.20968 1.08591 0.96761 0.93885 1.22479 0.91099 0.85887 0.99464 1.67820 1.15882 1.35290 1.01474 1.22637 0.93507 0.94320 0.92886 1.21077 1.06220 0.90849 0.99849 1.19948 0.96907 0.83392 0.95273 1.84146 1.72386 1.20199 1.30533 1.21077 1.02007 0.77764 0.97630 1.22079 1.01993 0.96250 0.93860 0.90549 0.93467 0.78168 0.92573 0.90597 0.92042 0.91464 0.89831 0.90503 0.80581 0.81581 0.81312 0.83473 0.89981 0.90627 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.54 13.06 55.49 0.72 -26.81 16 2 C -0.01 -0.34 5.50 -17.43 -0.10 -0.44 16 3 Si 0.91 21.99 29.55 -169.99 -5.02 16.97 16 4 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 5 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 6 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 7 C -0.24 -6.42 9.97 -15.06 -0.15 -6.57 16 8 H 0.07 1.84 7.83 -52.49 -0.41 1.43 16 9 N -0.72 -17.05 5.12 -53.41 -0.27 -17.32 16 10 C 0.20 3.64 3.39 -67.92 -0.23 3.41 16 11 H 0.05 1.00 8.11 -51.93 -0.42 0.58 16 12 C -0.14 -2.24 6.74 -23.33 -0.16 -2.40 16 13 C -0.10 -1.22 6.65 -25.67 -0.17 -1.39 16 14 C -0.13 -1.52 3.11 -89.45 -0.28 -1.80 16 15 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 16 C 0.12 1.33 5.93 -3.05 -0.02 1.31 16 17 N -0.61 -8.34 3.43 -173.00 -0.59 -8.93 16 18 C 0.61 8.71 7.86 -12.72 -0.10 8.61 16 19 O -0.51 -8.76 17.19 5.23 0.09 -8.67 16 20 C -0.01 -0.15 6.91 -36.90 -0.25 -0.41 16 21 C -0.10 -1.05 10.80 -37.29 -0.40 -1.45 16 22 C -0.20 -1.92 6.43 -105.22 -0.68 -2.59 16 23 C 0.17 1.44 11.28 -17.17 -0.19 1.24 16 24 N -0.49 -4.35 10.34 -13.00 -0.13 -4.49 16 25 C 0.12 0.81 11.13 -17.52 -0.20 0.61 16 26 C -0.16 -1.18 10.13 -39.38 -0.40 -1.58 16 27 C 0.10 1.00 7.48 -38.13 -0.29 0.71 16 28 O -0.17 -1.91 7.71 3.72 0.03 -1.88 16 29 C 0.14 2.03 6.82 -4.12 -0.03 2.00 16 30 C -0.12 -1.85 2.25 -91.18 -0.21 -2.06 16 31 H 0.08 1.24 7.74 -51.93 -0.40 0.84 16 32 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 33 H 0.38 9.76 7.63 -40.82 -0.31 9.45 16 34 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 35 H 0.08 1.38 7.98 -51.93 -0.41 0.97 16 36 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 38 H 0.08 0.86 6.25 -51.93 -0.32 0.54 16 39 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 40 H 0.18 1.51 8.06 -52.49 -0.42 1.09 16 41 H 0.17 0.89 8.06 -52.49 -0.42 0.47 16 42 H 0.17 0.62 8.06 -52.49 -0.42 0.20 16 43 H 0.15 0.73 8.06 -52.49 -0.42 0.30 16 44 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 45 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 LS Contribution 373.20 15.07 5.62 5.62 Total: -1.00 -31.87 373.20 -9.47 -41.34 By element: Atomic # 1 Polarization: 13.02 SS G_CDS: -6.07 Total: 6.95 kcal Atomic # 6 Polarization: 1.06 SS G_CDS: -3.84 Total: -2.79 kcal Atomic # 7 Polarization: -57.27 SS G_CDS: -0.28 Total: -57.55 kcal Atomic # 8 Polarization: -10.66 SS G_CDS: 0.12 Total: -10.54 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -31.87 -9.47 -41.34 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026305135.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.398 kcal (2) G-P(sol) polarization free energy of solvation -31.871 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.527 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.468 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.340 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds