Wall clock time and date at job start Sat Apr 11 2020 06:18:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86798 * 120.00317 * 2 1 4 4 H 1.48502 * 109.46941 * 269.99983 * 3 2 1 5 5 H 1.48499 * 109.47213 * 29.99870 * 3 2 1 6 6 H 1.48499 * 109.47120 * 149.99985 * 3 2 1 7 7 C 1.38818 * 120.00048 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00379 * 179.97438 * 7 2 1 9 9 N 1.36945 * 119.99327 * 359.97438 * 7 2 1 10 10 C 1.46505 * 119.99363 * 180.02562 * 9 7 2 11 11 H 1.09001 * 110.43933 * 32.43824 * 10 9 7 12 12 C 1.55940 * 110.49307 * 269.73317 * 10 9 7 13 13 C 1.55931 * 105.58574 * 248.51730 * 12 10 9 14 14 C 1.50998 * 101.81184 * 25.61806 * 13 12 10 15 15 H 1.09003 * 110.05890 * 68.64714 * 14 13 12 16 16 C 1.50359 * 125.53910 * 203.83129 * 14 13 12 17 17 N 1.49213 * 104.86114 * 143.74514 * 16 14 13 18 18 C 1.34782 * 126.05746 * 172.90371 * 17 16 14 19 19 O 1.21557 * 120.00068 * 180.02562 * 18 17 16 20 20 C 1.47789 * 119.99621 * 0.02562 * 18 17 16 21 21 N 1.32813 * 120.07505 * 0.02615 * 20 18 17 22 22 C 1.31680 * 122.00804 * 179.71767 * 21 20 18 23 23 C 1.38389 * 121.70249 * 0.53913 * 22 21 20 24 24 C 1.38862 * 119.13334 * 359.45374 * 23 22 21 25 25 O 1.34425 * 134.63784 * 180.25872 * 24 23 22 26 26 C 1.34453 * 110.85502 * 180.02562 * 25 24 23 27 27 C 1.34304 * 110.16442 * 359.97438 * 26 25 24 28 28 C 1.40201 * 120.07053 * 179.97438 * 20 18 17 29 29 C 1.49692 * 107.88303 * 353.16930 * 17 16 14 30 30 C 1.50287 * 110.49215 * 154.99830 * 10 9 7 31 31 H 1.09003 * 109.48313 * 198.94063 * 30 10 9 32 32 H 0.97001 * 119.99687 * 359.97438 * 1 2 3 33 33 H 0.96996 * 120.00320 * 0.02562 * 9 7 2 34 34 H 1.09002 * 110.18891 * 7.95620 * 12 10 9 35 35 H 1.09000 * 110.18735 * 129.79743 * 12 10 9 36 36 H 1.08997 * 111.04511 * 267.39707 * 13 12 10 37 37 H 1.09007 * 110.74912 * 143.70309 * 13 12 10 38 38 H 1.09001 * 110.35735 * 24.90037 * 16 14 13 39 39 H 1.09001 * 110.45581 * 262.64175 * 16 14 13 40 40 H 1.07997 * 119.14887 * 180.26831 * 22 21 20 41 41 H 1.08002 * 120.43610 * 179.73638 * 23 22 21 42 42 H 1.07995 * 124.91946 * 180.02562 * 26 25 24 43 43 H 1.07999 * 126.89392 * 179.97438 * 27 26 25 44 44 H 1.08997 * 110.84863 * 92.82640 * 29 17 16 45 45 H 1.09006 * 110.84409 * 216.43723 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4478 2.6527 0.7000 6 1 3.5478 1.4400 0.7000 7 6 2.0103 -1.2022 -0.0005 8 1 3.0902 -1.2023 -0.0010 9 7 1.3254 -2.3881 -0.0005 10 6 2.0580 -3.6569 -0.0005 11 1 2.9948 -3.5555 0.5473 12 6 2.3250 -4.1331 -1.4612 13 6 1.4448 -5.4056 -1.6546 14 6 0.3415 -5.1738 -0.6501 15 1 -0.2840 -4.3395 -0.9677 16 6 -0.5069 -6.2441 -0.0213 17 7 -0.7348 -5.7789 1.3781 18 6 -1.5545 -6.3525 2.2812 19 8 -1.6572 -5.8788 3.3959 20 6 -2.3284 -7.5575 1.9161 21 7 -2.2169 -8.0766 0.6987 22 6 -2.8841 -9.1519 0.3347 23 6 -3.7505 -9.7976 1.1993 24 6 -3.9116 -9.3052 2.4876 25 8 -4.6417 -9.6728 3.5548 26 6 -4.4332 -8.8379 4.5879 27 6 -3.5539 -7.8836 4.2418 28 6 -3.1811 -8.1557 2.8545 29 6 0.1033 -4.5585 1.5990 30 6 1.2161 -4.7504 0.5944 31 1 1.8568 -5.5788 0.8969 32 1 -0.4850 0.8401 0.0004 33 1 0.3555 -2.3880 -0.0005 34 1 2.0361 -3.3560 -2.1690 35 1 3.3778 -4.3856 -1.5880 36 1 2.0059 -6.3094 -1.4171 37 1 1.0471 -5.4496 -2.6686 38 1 0.0222 -7.1971 -0.0227 39 1 -1.4559 -6.3372 -0.5493 40 1 -2.7552 -9.5373 -0.6659 41 1 -4.2907 -10.6758 0.8778 42 1 -4.9040 -8.9229 5.5561 43 1 -3.1947 -7.0767 4.8633 44 1 -0.4648 -3.6535 1.3837 45 1 0.4978 -4.5375 2.6150 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001026319513.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:47 Heat of formation + Delta-G solvation = 53.124388 kcal Electronic energy + Delta-G solvation = -29496.181473 eV Core-core repulsion = 25481.572775 eV Total energy + Delta-G solvation = -4014.608698 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 2.10 seconds Orbital eigenvalues (eV) -42.97294 -40.53976 -39.40348 -38.14543 -35.19348 -33.32127 -33.17084 -32.17023 -30.78944 -30.30068 -29.08490 -28.39977 -25.60415 -25.07912 -23.34332 -23.30435 -23.04478 -21.92419 -19.87533 -19.67540 -18.80209 -18.20428 -17.69596 -17.42589 -16.69337 -16.62453 -15.98666 -15.64503 -15.34105 -14.84184 -14.57109 -14.38837 -14.25993 -13.87695 -13.76646 -13.49806 -13.24807 -13.14558 -12.86470 -12.52544 -12.29495 -12.06257 -11.80182 -11.47205 -11.14839 -10.91961 -10.80497 -10.61837 -10.56953 -10.47216 -10.31400 -10.17834 -10.06821 -9.76135 -9.64368 -9.57354 -9.46190 -8.89496 -8.71881 -8.38200 -6.94817 -5.75386 -3.04137 0.07468 0.87059 2.00067 2.28754 2.68812 2.90153 3.44812 3.50342 3.51931 3.66052 3.86028 4.04669 4.22837 4.33034 4.57835 4.60940 4.70661 4.88206 5.01095 5.09141 5.27126 5.37460 5.43302 5.46323 5.55451 5.59376 5.66484 5.70359 5.80363 5.89913 5.91164 5.95125 6.03484 6.11223 6.12436 6.21713 6.34354 6.37946 6.46462 6.54869 6.58783 6.62095 6.72744 6.88434 7.09766 7.42499 7.64144 7.72819 8.20795 8.43118 9.54415 10.11263 10.45834 11.47066 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.018288 B = 0.002681 C = 0.002444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1530.665268 B =10443.107369 C =11452.200996 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.012 4.012 3 Si 0.905 3.095 4 H -0.291 1.291 5 H -0.292 1.292 6 H -0.282 1.282 7 C -0.239 4.239 8 H 0.071 0.929 9 N -0.718 5.718 10 C 0.194 3.806 11 H 0.056 0.944 12 C -0.145 4.145 13 C -0.093 4.093 14 C -0.132 4.132 15 H 0.088 0.912 16 C 0.140 3.860 17 N -0.601 5.601 18 C 0.579 3.421 19 O -0.534 6.534 20 C 0.147 3.853 21 N -0.455 5.455 22 C 0.108 3.892 23 C -0.140 4.140 24 C 0.079 3.921 25 O -0.189 6.189 26 C 0.000 4.000 27 C -0.173 4.173 28 C -0.135 4.135 29 C 0.131 3.869 30 C -0.122 4.122 31 H 0.075 0.925 32 H 0.255 0.745 33 H 0.384 0.616 34 H 0.076 0.924 35 H 0.052 0.948 36 H 0.060 0.940 37 H 0.060 0.940 38 H 0.070 0.930 39 H 0.080 0.920 40 H 0.175 0.825 41 H 0.148 0.852 42 H 0.216 0.784 43 H 0.174 0.826 44 H 0.088 0.912 45 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.149 -23.334 2.142 24.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.209 4.209 3 Si 0.737 3.263 4 H -0.218 1.218 5 H -0.219 1.219 6 H -0.208 1.208 7 C -0.370 4.370 8 H 0.089 0.911 9 N -0.360 5.360 10 C 0.082 3.918 11 H 0.074 0.926 12 C -0.186 4.186 13 C -0.131 4.131 14 C -0.151 4.151 15 H 0.106 0.894 16 C 0.019 3.981 17 N -0.334 5.334 18 C 0.365 3.635 19 O -0.411 6.411 20 C 0.004 3.996 21 N -0.169 5.169 22 C -0.046 4.046 23 C -0.160 4.160 24 C 0.024 3.976 25 O -0.089 6.089 26 C -0.064 4.064 27 C -0.193 4.193 28 C -0.139 4.139 29 C 0.011 3.989 30 C -0.143 4.143 31 H 0.093 0.907 32 H 0.065 0.935 33 H 0.219 0.781 34 H 0.094 0.906 35 H 0.071 0.929 36 H 0.079 0.921 37 H 0.078 0.922 38 H 0.088 0.912 39 H 0.099 0.901 40 H 0.192 0.808 41 H 0.165 0.835 42 H 0.232 0.768 43 H 0.192 0.808 44 H 0.106 0.894 45 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -6.768 -22.792 2.224 23.879 hybrid contribution -0.457 0.595 0.545 0.927 sum -7.224 -22.196 2.768 23.506 Atomic orbital electron populations 1.69654 1.05080 1.25658 1.57638 1.24732 0.95475 0.97645 1.03002 0.86215 0.78677 0.84009 0.77426 1.21823 1.21867 1.20795 1.19250 0.91011 0.84087 1.42676 0.91130 1.42446 1.05703 0.99591 1.88233 1.20160 0.94004 0.85296 0.92303 0.92606 1.23777 0.97925 0.96257 1.00661 1.21602 0.95476 0.98450 0.97613 1.22352 0.96872 0.99194 0.96732 0.89405 1.21298 0.99921 0.96419 0.80508 1.49706 1.41936 1.28549 1.13197 1.17269 0.79487 0.82536 0.84158 1.90774 1.65756 1.63901 1.20655 1.20746 0.94812 0.95321 0.88734 1.67978 1.22046 1.10999 1.15847 1.22672 0.91532 0.90713 0.99687 1.21190 1.02387 1.03138 0.89306 1.19711 0.93371 0.94813 0.89668 1.83968 1.56833 1.49185 1.18948 1.24275 1.00016 0.90369 0.91712 1.22759 1.00409 1.02169 0.93962 1.20633 0.99990 0.97130 0.96149 1.21573 0.91084 0.86634 0.99636 1.22520 0.96133 1.00581 0.95025 0.90696 0.93521 0.78128 0.90559 0.92946 0.92087 0.92150 0.91204 0.90147 0.80785 0.83470 0.76774 0.80834 0.89391 0.90366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.85 13.06 55.49 0.72 -27.12 16 2 C -0.01 -0.35 5.50 -17.43 -0.10 -0.45 16 3 Si 0.91 22.28 29.55 -169.99 -5.02 17.26 16 4 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 5 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 6 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 7 C -0.24 -6.45 9.96 -15.05 -0.15 -6.60 16 8 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 9 N -0.72 -17.21 4.81 -53.21 -0.26 -17.46 16 10 C 0.19 3.67 3.46 -67.71 -0.23 3.43 16 11 H 0.06 1.08 8.09 -51.93 -0.42 0.66 16 12 C -0.15 -2.40 6.73 -23.59 -0.16 -2.56 16 13 C -0.09 -1.26 6.66 -26.17 -0.17 -1.44 16 14 C -0.13 -1.97 2.75 -90.26 -0.25 -2.22 16 15 H 0.09 1.53 7.64 -51.93 -0.40 1.14 16 16 C 0.14 1.94 5.26 -3.85 -0.02 1.92 16 17 N -0.60 -9.80 3.42 -172.56 -0.59 -10.39 16 18 C 0.58 9.86 7.86 -12.35 -0.10 9.76 16 19 O -0.53 -10.30 15.54 5.32 0.08 -10.22 16 20 C 0.15 2.13 6.75 -82.80 -0.56 1.57 16 21 N -0.46 -5.55 6.98 -9.68 -0.07 -5.62 16 22 C 0.11 0.94 11.13 -17.56 -0.20 0.75 16 23 C -0.14 -1.18 10.13 -39.29 -0.40 -1.58 16 24 C 0.08 0.88 7.48 -38.29 -0.29 0.59 16 25 O -0.19 -1.91 10.57 4.97 0.05 -1.86 16 26 C 0.00 0.00 11.97 29.34 0.35 0.35 16 27 C -0.17 -2.01 10.31 -37.77 -0.39 -2.40 16 28 C -0.13 -1.79 6.16 -104.90 -0.65 -2.44 16 29 C 0.13 2.33 6.52 -3.20 -0.02 2.31 16 30 C -0.12 -2.01 2.60 -90.23 -0.23 -2.24 16 31 H 0.07 1.13 8.13 -51.93 -0.42 0.71 16 32 H 0.25 7.44 8.31 -40.82 -0.34 7.10 16 33 H 0.38 9.83 6.18 -40.82 -0.25 9.57 16 34 H 0.08 1.45 7.98 -51.93 -0.41 1.03 16 35 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 37 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.07 0.89 7.93 -51.93 -0.41 0.48 16 39 H 0.08 1.09 7.13 -51.93 -0.37 0.72 16 40 H 0.18 0.87 8.06 -52.49 -0.42 0.44 16 41 H 0.15 0.76 8.06 -52.49 -0.42 0.34 16 42 H 0.22 0.82 8.06 -52.49 -0.42 0.39 16 43 H 0.17 2.07 7.29 -52.49 -0.38 1.69 16 44 H 0.09 1.79 6.97 -51.93 -0.36 1.43 16 45 H 0.08 1.43 8.09 -51.93 -0.42 1.01 16 LS Contribution 366.66 15.07 5.53 5.53 Total: -1.00 -32.93 366.66 -9.05 -41.98 By element: Atomic # 1 Polarization: 15.09 SS G_CDS: -5.94 Total: 9.15 kcal Atomic # 6 Polarization: 2.33 SS G_CDS: -3.56 Total: -1.23 kcal Atomic # 7 Polarization: -60.41 SS G_CDS: -0.19 Total: -60.60 kcal Atomic # 8 Polarization: -12.22 SS G_CDS: 0.14 Total: -12.08 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -5.02 Total: 17.26 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -32.93 -9.05 -41.98 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026319513.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.101 kcal (2) G-P(sol) polarization free energy of solvation -32.931 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.977 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.10 seconds