Wall clock time and date at job start Sat Apr 11 2020 06:18:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86798 * 120.00317 * 2 1 4 4 H 1.48502 * 109.46941 * 269.99983 * 3 2 1 5 5 H 1.48499 * 109.47213 * 29.99870 * 3 2 1 6 6 H 1.48499 * 109.47120 * 149.99985 * 3 2 1 7 7 C 1.38818 * 120.00048 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00379 * 179.97438 * 7 2 1 9 9 N 1.36945 * 119.99327 * 359.97438 * 7 2 1 10 10 C 1.46505 * 119.99363 * 180.02562 * 9 7 2 11 11 H 1.09001 * 110.43933 * 32.43824 * 10 9 7 12 12 C 1.55940 * 110.49307 * 269.73317 * 10 9 7 13 13 C 1.55931 * 105.58574 * 248.51730 * 12 10 9 14 14 C 1.50998 * 101.81184 * 25.61806 * 13 12 10 15 15 H 1.09003 * 110.05890 * 68.64714 * 14 13 12 16 16 C 1.50359 * 125.53910 * 203.83129 * 14 13 12 17 17 N 1.49213 * 104.86114 * 143.74514 * 16 14 13 18 18 C 1.34782 * 126.05746 * 172.90371 * 17 16 14 19 19 O 1.21557 * 120.00068 * 180.02562 * 18 17 16 20 20 C 1.47789 * 119.99621 * 0.02562 * 18 17 16 21 21 N 1.32813 * 120.07505 * 0.02615 * 20 18 17 22 22 C 1.31680 * 122.00804 * 179.71767 * 21 20 18 23 23 C 1.38389 * 121.70249 * 0.53913 * 22 21 20 24 24 C 1.38862 * 119.13334 * 359.45374 * 23 22 21 25 25 O 1.34425 * 134.63784 * 180.25872 * 24 23 22 26 26 C 1.34453 * 110.85502 * 180.02562 * 25 24 23 27 27 C 1.34304 * 110.16442 * 359.97438 * 26 25 24 28 28 C 1.40201 * 120.07053 * 179.97438 * 20 18 17 29 29 C 1.49692 * 107.88303 * 353.16930 * 17 16 14 30 30 C 1.50287 * 110.49215 * 154.99830 * 10 9 7 31 31 H 1.09003 * 109.48313 * 198.94063 * 30 10 9 32 32 H 0.97001 * 119.99687 * 359.97438 * 1 2 3 33 33 H 0.96996 * 120.00320 * 0.02562 * 9 7 2 34 34 H 1.09002 * 110.18891 * 7.95620 * 12 10 9 35 35 H 1.09000 * 110.18735 * 129.79743 * 12 10 9 36 36 H 1.08997 * 111.04511 * 267.39707 * 13 12 10 37 37 H 1.09007 * 110.74912 * 143.70309 * 13 12 10 38 38 H 1.09001 * 110.35735 * 24.90037 * 16 14 13 39 39 H 1.09001 * 110.45581 * 262.64175 * 16 14 13 40 40 H 1.07997 * 119.14887 * 180.26831 * 22 21 20 41 41 H 1.08002 * 120.43610 * 179.73638 * 23 22 21 42 42 H 1.07995 * 124.91946 * 180.02562 * 26 25 24 43 43 H 1.07999 * 126.89392 * 179.97438 * 27 26 25 44 44 H 1.08997 * 110.84863 * 92.82640 * 29 17 16 45 45 H 1.09006 * 110.84409 * 216.43723 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4478 2.6527 0.7000 6 1 3.5478 1.4400 0.7000 7 6 2.0103 -1.2022 -0.0005 8 1 3.0902 -1.2023 -0.0010 9 7 1.3254 -2.3881 -0.0005 10 6 2.0580 -3.6569 -0.0005 11 1 2.9948 -3.5555 0.5473 12 6 2.3250 -4.1331 -1.4612 13 6 1.4448 -5.4056 -1.6546 14 6 0.3415 -5.1738 -0.6501 15 1 -0.2840 -4.3395 -0.9677 16 6 -0.5069 -6.2441 -0.0213 17 7 -0.7348 -5.7789 1.3781 18 6 -1.5545 -6.3525 2.2812 19 8 -1.6572 -5.8788 3.3959 20 6 -2.3284 -7.5575 1.9161 21 7 -2.2169 -8.0766 0.6987 22 6 -2.8841 -9.1519 0.3347 23 6 -3.7505 -9.7976 1.1993 24 6 -3.9116 -9.3052 2.4876 25 8 -4.6417 -9.6728 3.5548 26 6 -4.4332 -8.8379 4.5879 27 6 -3.5539 -7.8836 4.2418 28 6 -3.1811 -8.1557 2.8545 29 6 0.1033 -4.5585 1.5990 30 6 1.2161 -4.7504 0.5944 31 1 1.8568 -5.5788 0.8969 32 1 -0.4850 0.8401 0.0004 33 1 0.3555 -2.3880 -0.0005 34 1 2.0361 -3.3560 -2.1690 35 1 3.3778 -4.3856 -1.5880 36 1 2.0059 -6.3094 -1.4171 37 1 1.0471 -5.4496 -2.6686 38 1 0.0222 -7.1971 -0.0227 39 1 -1.4559 -6.3372 -0.5493 40 1 -2.7552 -9.5373 -0.6659 41 1 -4.2907 -10.6758 0.8778 42 1 -4.9040 -8.9229 5.5561 43 1 -3.1947 -7.0767 4.8633 44 1 -0.4648 -3.6535 1.3837 45 1 0.4978 -4.5375 2.6150 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001026319513.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:46 Heat of formation + Delta-G solvation = 31.920474 kcal Electronic energy + Delta-G solvation = -29497.100943 eV Core-core repulsion = 25481.572775 eV Total energy + Delta-G solvation = -4015.528169 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -43.75181 -41.81286 -40.43422 -39.31167 -36.71536 -35.07784 -33.99182 -33.03112 -32.58252 -31.25571 -30.31051 -29.85886 -27.06478 -26.13640 -25.14798 -24.31561 -24.03612 -22.88691 -21.11645 -20.76598 -20.29268 -19.41319 -18.96047 -18.64798 -17.73668 -17.47536 -17.32624 -16.75208 -16.51398 -16.24952 -15.86284 -15.74798 -15.38893 -15.27235 -14.94773 -14.73720 -14.49473 -14.23929 -13.92902 -13.81667 -13.64416 -13.25145 -13.17013 -12.92417 -12.84108 -12.64242 -12.35849 -12.21513 -12.03278 -11.83374 -11.51732 -11.44264 -11.42723 -11.38453 -10.91142 -10.87203 -10.62975 -10.54859 -9.82827 -9.39203 -8.96006 -7.91515 -5.18842 -0.78391 0.08240 1.20403 1.47361 1.48730 1.56893 1.57401 1.60615 1.68569 2.57949 2.71577 2.87614 3.07171 3.26085 3.42695 3.48029 3.78431 3.79149 3.93087 4.01864 4.05337 4.16148 4.25698 4.31083 4.36256 4.47879 4.52096 4.57511 4.64189 4.71813 4.74388 4.82115 4.84072 4.87516 4.98954 5.05220 5.10053 5.17916 5.24088 5.26842 5.35909 5.40715 5.47196 5.56342 5.70782 5.85358 6.30775 6.35656 6.60477 6.96621 7.36813 8.14361 8.36402 9.32036 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.018288 B = 0.002681 C = 0.002444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1530.665268 B =10443.107369 C =11452.200996 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.972 5.972 2 C -0.078 4.078 3 Si 0.969 3.031 4 H -0.287 1.287 5 H -0.301 1.301 6 H -0.270 1.270 7 C -0.232 4.232 8 H 0.078 0.922 9 N -0.730 5.730 10 C 0.182 3.818 11 H 0.052 0.948 12 C -0.138 4.138 13 C -0.079 4.079 14 C -0.117 4.117 15 H 0.054 0.946 16 C 0.151 3.849 17 N -0.604 5.604 18 C 0.571 3.429 19 O -0.574 6.574 20 C 0.108 3.892 21 N -0.461 5.461 22 C 0.105 3.895 23 C -0.112 4.112 24 C 0.063 3.937 25 O -0.188 6.188 26 C 0.041 3.959 27 C -0.224 4.224 28 C -0.155 4.155 29 C 0.135 3.865 30 C -0.119 4.119 31 H 0.100 0.900 32 H 0.248 0.752 33 H 0.372 0.628 34 H 0.047 0.953 35 H 0.075 0.925 36 H 0.093 0.907 37 H 0.076 0.924 38 H 0.093 0.907 39 H 0.086 0.914 40 H 0.220 0.780 41 H 0.190 0.810 42 H 0.263 0.737 43 H 0.156 0.844 44 H 0.050 0.950 45 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.088 -27.269 0.767 28.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.623 5.623 2 C -0.270 4.270 3 Si 0.799 3.201 4 H -0.215 1.215 5 H -0.228 1.228 6 H -0.194 1.194 7 C -0.364 4.364 8 H 0.096 0.904 9 N -0.371 5.371 10 C 0.073 3.927 11 H 0.070 0.930 12 C -0.178 4.178 13 C -0.116 4.116 14 C -0.137 4.137 15 H 0.073 0.927 16 C 0.030 3.970 17 N -0.336 5.336 18 C 0.359 3.641 19 O -0.453 6.453 20 C -0.033 4.033 21 N -0.174 5.174 22 C -0.050 4.050 23 C -0.132 4.132 24 C 0.008 3.992 25 O -0.087 6.087 26 C -0.023 4.023 27 C -0.244 4.244 28 C -0.159 4.159 29 C 0.013 3.987 30 C -0.139 4.139 31 H 0.118 0.882 32 H 0.057 0.943 33 H 0.204 0.796 34 H 0.066 0.934 35 H 0.093 0.907 36 H 0.112 0.888 37 H 0.095 0.905 38 H 0.111 0.889 39 H 0.104 0.896 40 H 0.236 0.764 41 H 0.208 0.792 42 H 0.279 0.721 43 H 0.174 0.826 44 H 0.069 0.931 45 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -6.652 -26.772 0.821 27.598 hybrid contribution -0.538 1.671 1.017 2.029 sum -7.190 -25.100 1.838 26.175 Atomic orbital electron populations 1.69825 1.06623 1.25743 1.60089 1.25509 0.96256 1.00953 1.04311 0.85192 0.77699 0.79895 0.77315 1.21468 1.22799 1.19449 1.19653 0.91467 0.85219 1.40102 0.90443 1.42621 1.05330 1.00768 1.88342 1.20471 0.93719 0.84049 0.94441 0.93008 1.23572 1.00004 0.96924 0.97297 1.21564 0.94192 0.97933 0.97949 1.22289 0.96592 0.98472 0.96309 0.92738 1.21346 1.00202 0.96604 0.78821 1.49772 1.41721 1.27825 1.14293 1.17875 0.79220 0.83296 0.83678 1.90728 1.66980 1.65352 1.22281 1.20268 0.96912 0.95638 0.90494 1.67867 1.22724 1.12151 1.14681 1.23458 0.90662 0.89444 1.01436 1.21757 1.00660 1.03198 0.87604 1.20089 0.93658 0.94521 0.90938 1.84002 1.56533 1.49203 1.19011 1.25063 0.97163 0.87775 0.92331 1.22776 1.03442 1.03994 0.94171 1.20925 1.00152 0.98125 0.96729 1.21295 0.91599 0.86412 0.99388 1.22384 0.95969 1.00218 0.95352 0.88228 0.94328 0.79551 0.93437 0.90659 0.88826 0.90510 0.88885 0.89588 0.76380 0.79240 0.72102 0.82585 0.93118 0.91803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.73 13.06 21.65 0.28 -60.45 16 2 C -0.08 -4.56 5.50 84.86 0.47 -4.09 16 3 Si 0.97 46.99 29.55 68.60 2.03 49.02 16 4 H -0.29 -13.65 7.11 99.48 0.71 -12.94 16 5 H -0.30 -14.90 7.11 99.48 0.71 -14.19 16 6 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 7 C -0.23 -12.86 9.96 84.03 0.84 -12.02 16 8 H 0.08 4.09 7.83 -2.91 -0.02 4.07 16 9 N -0.73 -36.44 4.81 -322.25 -1.55 -37.98 16 10 C 0.18 6.96 3.46 45.13 0.16 7.12 16 11 H 0.05 2.00 8.09 -2.39 -0.02 1.98 16 12 C -0.14 -4.35 6.73 32.63 0.22 -4.13 16 13 C -0.08 -1.90 6.66 30.96 0.21 -1.69 16 14 C -0.12 -3.42 2.75 -10.56 -0.03 -3.45 16 15 H 0.05 1.97 7.64 -2.39 -0.02 1.95 16 16 C 0.15 4.02 5.26 85.00 0.45 4.47 16 17 N -0.60 -20.53 3.42 -818.13 -2.80 -23.33 16 18 C 0.57 20.66 7.86 86.77 0.68 21.34 16 19 O -0.57 -24.22 15.54 -3.90 -0.06 -24.28 16 20 C 0.11 3.18 6.75 42.00 0.28 3.47 16 21 N -0.46 -10.45 6.98 -184.55 -1.29 -11.74 16 22 C 0.10 1.43 11.13 84.75 0.94 2.38 16 23 C -0.11 -1.44 10.13 22.46 0.23 -1.21 16 24 C 0.06 1.25 7.48 23.11 0.17 1.42 16 25 O -0.19 -3.29 10.57 -5.14 -0.05 -3.35 16 26 C 0.04 0.62 11.97 66.92 0.80 1.42 16 27 C -0.22 -5.38 10.31 23.44 0.24 -5.14 16 28 C -0.15 -4.15 6.16 -20.04 -0.12 -4.27 16 29 C 0.13 5.14 6.52 85.15 0.56 5.70 16 30 C -0.12 -3.93 2.60 -10.54 -0.03 -3.96 16 31 H 0.10 2.84 8.13 -2.39 -0.02 2.83 16 32 H 0.25 15.16 8.31 -92.71 -0.77 14.39 16 33 H 0.37 20.28 6.18 -92.71 -0.57 19.70 16 34 H 0.05 1.79 7.98 -2.39 -0.02 1.77 16 35 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 36 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 37 H 0.08 1.68 8.14 -2.38 -0.02 1.66 16 38 H 0.09 2.10 7.93 -2.39 -0.02 2.08 16 39 H 0.09 2.23 7.13 -2.39 -0.02 2.22 16 40 H 0.22 0.93 8.06 -2.91 -0.02 0.91 16 41 H 0.19 0.80 8.06 -2.91 -0.02 0.78 16 42 H 0.26 1.09 8.06 -2.91 -0.02 1.06 16 43 H 0.16 4.19 7.29 -2.91 -0.02 4.17 16 44 H 0.05 2.29 6.97 -2.39 -0.02 2.28 16 45 H 0.06 2.55 8.09 -2.38 -0.02 2.53 16 Total: -1.00 -78.48 366.66 3.07 -75.40 By element: Atomic # 1 Polarization: 28.91 SS G_CDS: 0.46 Total: 29.37 kcal Atomic # 6 Polarization: 1.28 SS G_CDS: 6.06 Total: 7.34 kcal Atomic # 7 Polarization: -128.15 SS G_CDS: -5.36 Total: -133.50 kcal Atomic # 8 Polarization: -27.52 SS G_CDS: -0.11 Total: -27.63 kcal Atomic # 14 Polarization: 46.99 SS G_CDS: 2.03 Total: 49.02 kcal Total: -78.48 3.07 -75.40 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026319513.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.325 kcal (2) G-P(sol) polarization free energy of solvation -78.479 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.846 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.404 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.920 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds