Wall clock time and date at job start Sat Apr 11 2020 06:18:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86796 * 120.00009 * 2 1 4 4 H 1.48503 * 109.46835 * 239.99775 * 3 2 1 5 5 H 1.48500 * 109.47363 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47357 * 119.99770 * 3 2 1 7 7 C 1.38810 * 119.99984 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00138 * 180.02562 * 7 2 1 9 9 N 1.36944 * 120.00278 * 0.02562 * 7 2 1 10 10 C 1.46494 * 120.00024 * 179.97438 * 9 7 2 11 11 H 1.08995 * 110.40991 * 32.53544 * 10 9 7 12 12 C 1.54835 * 110.45935 * 269.92521 * 10 9 7 13 13 C 1.54836 * 102.73107 * 203.05881 * 12 10 9 14 14 C 1.54142 * 104.34879 * 38.23200 * 13 12 10 15 15 H 1.09002 * 112.65492 * 99.31739 * 14 13 12 16 16 C 1.54466 * 108.79840 * 224.03423 * 14 13 12 17 17 N 1.48342 * 104.30420 * 138.53957 * 16 14 13 18 18 C 1.34777 * 128.19248 * 138.25053 * 17 16 14 19 19 O 1.21562 * 120.00576 * 354.53592 * 18 17 16 20 20 C 1.47786 * 119.99895 * 174.52834 * 18 17 16 21 21 N 1.32824 * 120.07186 * 4.61944 * 20 18 17 22 22 C 1.31679 * 122.00853 * 179.69980 * 21 20 18 23 23 C 1.38385 * 121.70375 * 0.58273 * 22 21 20 24 24 C 1.38863 * 119.13234 * 359.71515 * 23 22 21 25 25 O 1.34425 * 134.63450 * 180.02562 * 24 23 22 26 26 C 1.34448 * 110.85141 * 179.97438 * 25 24 23 27 27 C 1.34301 * 110.16697 * 0.02562 * 26 25 24 28 28 C 1.40195 * 120.07688 * 184.88971 * 20 18 17 29 29 C 1.48334 * 103.60842 * 318.23508 * 17 16 14 30 30 C 1.54153 * 110.45563 * 154.99898 * 10 9 7 31 31 H 1.09001 * 112.65352 * 19.39415 * 30 10 9 32 32 H 0.97000 * 119.99926 * 0.02562 * 1 2 3 33 33 H 0.96997 * 119.99410 * 359.97438 * 9 7 2 34 34 H 1.09002 * 110.75638 * 321.37035 * 12 10 9 35 35 H 1.09003 * 110.75903 * 84.74624 * 12 10 9 36 36 H 1.09000 * 110.45599 * 279.51308 * 13 12 10 37 37 H 1.09004 * 110.45515 * 156.94891 * 13 12 10 38 38 H 1.08996 * 110.46651 * 257.24987 * 16 14 13 39 39 H 1.08995 * 110.46431 * 19.84059 * 16 14 13 40 40 H 1.08003 * 119.14212 * 180.29610 * 22 21 20 41 41 H 1.07993 * 120.43448 * 179.69687 * 23 22 21 42 42 H 1.07997 * 124.91280 * 179.97438 * 26 25 24 43 43 H 1.08008 * 126.89495 * 179.97438 * 27 26 25 44 44 H 1.08997 * 110.46479 * 283.06292 * 29 17 16 45 45 H 1.09006 * 110.57783 * 160.52984 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2853 2.7465 -0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2022 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 2.0581 -3.6568 0.0005 11 1 2.9940 -3.5553 0.5499 12 6 2.3271 -4.1264 -1.4501 13 6 2.5257 -5.6529 -1.2833 14 6 1.4937 -6.0576 -0.2123 15 1 0.5891 -6.4878 -0.6422 16 6 2.1686 -7.0183 0.7914 17 7 1.6696 -6.5743 2.1160 18 6 1.2676 -7.3355 3.1530 19 8 1.1953 -8.5426 3.0289 20 6 0.9149 -6.7027 4.4411 21 7 0.9050 -5.3792 4.5518 22 6 0.5911 -4.7754 5.6791 23 6 0.2641 -5.4881 6.8193 24 6 0.2615 -6.8759 6.7715 25 8 0.0017 -7.8510 7.6595 26 6 0.1451 -9.0629 7.0953 27 6 0.5071 -8.9345 5.8083 28 6 0.5956 -7.4982 5.5505 29 6 1.7181 -5.0943 2.0290 30 6 1.1939 -4.7779 0.6110 31 1 0.1315 -4.5342 0.6146 32 1 -0.4850 0.8400 -0.0004 33 1 0.3556 -2.3881 0.0005 34 1 1.4698 -3.9159 -2.0896 35 1 3.2295 -3.6604 -1.8461 36 1 3.5369 -5.8702 -0.9394 37 1 2.3226 -6.1683 -2.2221 38 1 1.8671 -8.0473 0.5959 39 1 3.2531 -6.9218 0.7410 40 1 0.5932 -3.6960 5.7159 41 1 0.0146 -4.9718 7.7344 42 1 -0.0078 -10.0034 7.6036 43 1 0.6949 -9.7323 5.1049 44 1 2.7421 -4.7391 2.1449 45 1 1.0721 -4.6448 2.7832 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001026319514.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:51 Heat of formation + Delta-G solvation = 39.491904 kcal Electronic energy + Delta-G solvation = -29485.229981 eV Core-core repulsion = 25470.030134 eV Total energy + Delta-G solvation = -4015.199847 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.95514 -40.38853 -39.18662 -38.10317 -35.10989 -33.40594 -33.16959 -32.09925 -30.92853 -30.16867 -29.11793 -28.37680 -25.41047 -24.96575 -23.57067 -23.25292 -22.76449 -22.01862 -20.28262 -19.55621 -18.92346 -18.18523 -17.73704 -17.07800 -16.75606 -16.61210 -15.91879 -15.67835 -15.53955 -15.17709 -14.54583 -14.34442 -14.25237 -13.88181 -13.56231 -13.40038 -13.15009 -13.01963 -12.94401 -12.53515 -12.38449 -12.03090 -11.75345 -11.59229 -11.13311 -10.85318 -10.75345 -10.67621 -10.60423 -10.36263 -10.27104 -10.20346 -10.12077 -9.90386 -9.72958 -9.65027 -9.38604 -8.83996 -8.75558 -8.49394 -6.91869 -5.74811 -3.02987 0.10130 0.91609 1.99814 2.31103 2.63431 2.88044 3.44614 3.49520 3.50075 3.65937 3.92948 4.08378 4.24735 4.56795 4.60213 4.72555 4.78732 4.85072 4.98441 5.02332 5.05807 5.39732 5.44909 5.48359 5.54444 5.56981 5.58734 5.65482 5.72050 5.88324 5.92517 5.95524 6.01760 6.03316 6.09675 6.22660 6.26584 6.35444 6.47986 6.54407 6.62442 6.68752 6.77210 6.85517 7.09659 7.47434 7.62039 7.71775 8.12286 8.43929 9.54978 10.13490 10.47748 11.47704 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.012651 B = 0.003128 C = 0.002578 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2212.805074 B = 8950.075541 C =10859.671545 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.013 4.013 3 Si 0.905 3.095 4 H -0.287 1.287 5 H -0.292 1.292 6 H -0.286 1.286 7 C -0.237 4.237 8 H 0.069 0.931 9 N -0.719 5.719 10 C 0.185 3.815 11 H 0.057 0.943 12 C -0.142 4.142 13 C -0.115 4.115 14 C -0.103 4.103 15 H 0.083 0.917 16 C 0.109 3.891 17 N -0.601 5.601 18 C 0.589 3.411 19 O -0.541 6.541 20 C 0.143 3.857 21 N -0.450 5.450 22 C 0.113 3.887 23 C -0.137 4.137 24 C 0.080 3.920 25 O -0.189 6.189 26 C 0.001 3.999 27 C -0.175 4.175 28 C -0.137 4.137 29 C 0.098 3.902 30 C -0.108 4.108 31 H 0.087 0.913 32 H 0.255 0.745 33 H 0.384 0.616 34 H 0.065 0.935 35 H 0.058 0.942 36 H 0.064 0.936 37 H 0.058 0.942 38 H 0.078 0.922 39 H 0.076 0.924 40 H 0.180 0.820 41 H 0.149 0.851 42 H 0.215 0.785 43 H 0.172 0.828 44 H 0.072 0.928 45 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.526 -17.425 12.089 21.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.209 4.209 3 Si 0.736 3.264 4 H -0.214 1.214 5 H -0.218 1.218 6 H -0.213 1.213 7 C -0.368 4.368 8 H 0.087 0.913 9 N -0.359 5.359 10 C 0.074 3.926 11 H 0.075 0.925 12 C -0.183 4.183 13 C -0.154 4.154 14 C -0.123 4.123 15 H 0.102 0.898 16 C -0.013 4.013 17 N -0.332 5.332 18 C 0.377 3.623 19 O -0.418 6.418 20 C 0.000 4.000 21 N -0.163 5.163 22 C -0.040 4.040 23 C -0.157 4.157 24 C 0.025 3.975 25 O -0.089 6.089 26 C -0.063 4.063 27 C -0.195 4.195 28 C -0.141 4.141 29 C -0.024 4.024 30 C -0.129 4.129 31 H 0.105 0.895 32 H 0.065 0.935 33 H 0.218 0.782 34 H 0.084 0.916 35 H 0.077 0.923 36 H 0.082 0.918 37 H 0.077 0.923 38 H 0.096 0.904 39 H 0.094 0.906 40 H 0.197 0.803 41 H 0.167 0.833 42 H 0.231 0.769 43 H 0.190 0.810 44 H 0.090 0.910 45 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 1.708 -17.397 11.712 21.042 hybrid contribution -0.051 0.442 0.575 0.727 sum 1.656 -16.955 12.287 21.005 Atomic orbital electron populations 1.69650 1.05066 1.25685 1.57733 1.24716 0.95462 0.97581 1.03115 0.86309 0.78536 0.83760 0.77819 1.21372 1.21794 1.21295 1.19195 0.90921 0.84155 1.42579 0.91293 1.42432 1.05690 0.99683 1.88126 1.21123 0.93770 0.85182 0.92481 0.92495 1.23226 1.01393 0.92829 1.00878 1.22382 0.97717 0.97779 0.97506 1.22749 0.98662 0.95439 0.95401 0.89841 1.22721 0.98252 0.99267 0.81076 1.49022 1.61573 1.09289 1.13334 1.17223 0.77700 0.85494 0.81932 1.90742 1.54896 1.13418 1.82783 1.20676 0.97540 0.88858 0.92914 1.67917 1.13091 1.08875 1.26374 1.22823 0.93859 1.01105 0.86237 1.21238 1.04112 0.88432 1.01953 1.19713 0.99330 0.90800 0.87618 1.83972 1.72907 1.13902 1.38099 1.24252 1.01706 0.86747 0.93643 1.22696 1.05585 0.94722 0.96521 1.20595 1.04297 0.94961 0.94236 1.23226 1.02736 0.77615 0.98820 1.23113 1.01156 0.94953 0.93631 0.89478 0.93523 0.78197 0.91610 0.92281 0.91778 0.92293 0.90356 0.90625 0.80333 0.83279 0.76858 0.81025 0.90993 0.86271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.56 13.06 55.49 0.72 -26.84 16 2 C -0.01 -0.36 5.50 -17.43 -0.10 -0.45 16 3 Si 0.90 21.96 29.55 -169.99 -5.02 16.93 16 4 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 5 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 6 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 7 C -0.24 -6.35 9.96 -15.06 -0.15 -6.50 16 8 H 0.07 1.80 7.83 -52.48 -0.41 1.38 16 9 N -0.72 -17.24 5.20 -51.91 -0.27 -17.51 16 10 C 0.19 3.48 3.06 -66.36 -0.20 3.28 16 11 H 0.06 1.09 7.12 -51.93 -0.37 0.72 16 12 C -0.14 -2.41 6.57 -24.80 -0.16 -2.57 16 13 C -0.12 -1.53 6.36 -25.17 -0.16 -1.69 16 14 C -0.10 -1.41 3.95 -88.15 -0.35 -1.76 16 15 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 16 C 0.11 1.45 6.60 -2.26 -0.01 1.44 16 17 N -0.60 -9.08 3.31 -170.03 -0.56 -9.65 16 18 C 0.59 9.46 7.89 -12.36 -0.10 9.36 16 19 O -0.54 -9.40 15.50 5.31 0.08 -9.31 16 20 C 0.14 2.12 6.76 -82.80 -0.56 1.56 16 21 N -0.45 -6.27 6.71 -9.68 -0.06 -6.34 16 22 C 0.11 1.24 11.13 -17.56 -0.20 1.04 16 23 C -0.14 -1.34 10.13 -39.30 -0.40 -1.74 16 24 C 0.08 0.93 7.48 -38.28 -0.29 0.65 16 25 O -0.19 -1.96 10.57 4.98 0.05 -1.91 16 26 C 0.00 0.01 11.97 29.34 0.35 0.36 16 27 C -0.18 -1.95 10.32 -37.78 -0.39 -2.34 16 28 C -0.14 -1.83 6.16 -104.90 -0.65 -2.48 16 29 C 0.10 1.52 6.03 -2.27 -0.01 1.50 16 30 C -0.11 -1.75 3.63 -88.15 -0.32 -2.07 16 31 H 0.09 1.54 7.83 -51.93 -0.41 1.13 16 32 H 0.25 7.35 8.31 -40.82 -0.34 7.01 16 33 H 0.38 9.88 7.63 -40.82 -0.31 9.57 16 34 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 35 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 36 H 0.06 0.78 7.18 -51.93 -0.37 0.40 16 37 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.08 1.03 7.85 -51.93 -0.41 0.62 16 39 H 0.08 0.93 7.20 -51.93 -0.37 0.55 16 40 H 0.18 1.48 8.06 -52.48 -0.42 1.06 16 41 H 0.15 0.99 8.06 -52.49 -0.42 0.56 16 42 H 0.22 0.75 8.06 -52.49 -0.42 0.33 16 43 H 0.17 1.88 7.31 -52.48 -0.38 1.49 16 44 H 0.07 1.12 7.20 -51.93 -0.37 0.74 16 45 H 0.12 1.95 5.28 -51.93 -0.27 1.67 16 LS Contribution 366.21 15.07 5.52 5.52 Total: -1.00 -32.58 366.21 -9.01 -41.59 By element: Atomic # 1 Polarization: 15.70 SS G_CDS: -5.78 Total: 9.93 kcal Atomic # 6 Polarization: 1.27 SS G_CDS: -3.69 Total: -2.42 kcal Atomic # 7 Polarization: -60.16 SS G_CDS: -0.17 Total: -60.33 kcal Atomic # 8 Polarization: -11.36 SS G_CDS: 0.13 Total: -11.22 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -32.58 -9.01 -41.59 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026319514.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.084 kcal (2) G-P(sol) polarization free energy of solvation -32.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.592 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds