Wall clock time and date at job start Sat Apr 11 2020 06:18:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86798 * 119.99737 * 2 1 4 4 H 1.48490 * 109.47240 * 239.99809 * 3 2 1 5 5 H 1.48498 * 109.47278 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.46896 * 119.99856 * 3 2 1 7 7 C 1.38807 * 119.99954 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99950 * 179.97438 * 7 2 1 9 9 N 1.36940 * 120.00267 * 0.02562 * 7 2 1 10 10 C 1.46503 * 120.00238 * 180.02562 * 9 7 2 11 11 H 1.09003 * 110.05404 * 324.57072 * 10 9 7 12 12 C 1.54730 * 111.53031 * 203.74993 * 10 9 7 13 13 C 1.54112 * 106.75625 * 242.34079 * 12 10 9 14 14 C 1.54452 * 104.73091 * 335.68760 * 13 12 10 15 15 H 1.09000 * 113.74145 * 272.41195 * 14 13 12 16 16 C 1.54895 * 109.70501 * 143.80173 * 14 13 12 17 17 N 1.47354 * 105.01229 * 288.54128 * 16 14 13 18 18 C 1.34785 * 125.69828 * 155.08420 * 17 16 14 19 19 O 1.21557 * 119.99488 * 179.69214 * 18 17 16 20 20 C 1.47779 * 119.99943 * 359.97438 * 18 17 16 21 21 N 1.32815 * 120.07717 * 359.44536 * 20 18 17 22 22 C 1.31677 * 122.01240 * 179.70807 * 21 20 18 23 23 C 1.38387 * 121.69958 * 0.57544 * 22 21 20 24 24 C 1.38859 * 119.13614 * 359.72488 * 23 22 21 25 25 O 1.34423 * 134.63741 * 180.02562 * 24 23 22 26 26 C 1.34452 * 110.85326 * 179.97438 * 25 24 23 27 27 C 1.34297 * 110.16405 * 0.02562 * 26 25 24 28 28 C 1.40206 * 120.07281 * 179.71976 * 20 18 17 29 29 C 1.47025 * 108.59567 * 334.82912 * 17 16 14 30 30 C 1.53903 * 109.91309 * 85.76621 * 10 9 7 31 31 H 1.09000 * 112.92233 * 265.08604 * 30 10 9 32 32 H 0.96997 * 120.00491 * 0.02562 * 1 2 3 33 33 H 0.96999 * 120.00005 * 359.97438 * 9 7 2 34 34 H 1.08995 * 110.72593 * 122.59262 * 12 10 9 35 35 H 1.08997 * 109.25897 * 1.27653 * 12 10 9 36 36 H 1.09000 * 110.37988 * 216.87371 * 13 12 10 37 37 H 1.09004 * 110.48182 * 94.55071 * 13 12 10 38 38 H 1.08997 * 110.45164 * 169.62504 * 16 14 13 39 39 H 1.09002 * 110.28873 * 47.37944 * 16 14 13 40 40 H 1.08002 * 119.14635 * 180.32268 * 22 21 20 41 41 H 1.08007 * 120.43235 * 179.69788 * 23 22 21 42 42 H 1.07998 * 124.91175 * 179.97438 * 26 25 24 43 43 H 1.08005 * 126.89260 * 180.02562 * 27 26 25 44 44 H 1.09003 * 109.83041 * 122.04695 * 29 17 16 45 45 H 1.09010 * 109.82679 * 242.92176 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6965 -1.2124 5 1 1.2852 2.7464 0.0006 6 1 3.1039 1.6964 1.2126 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3256 -2.3881 -0.0016 10 6 2.0581 -3.6568 -0.0016 11 1 2.9680 -3.5631 -0.5944 12 6 1.2016 -4.8070 -0.5825 13 6 1.0166 -5.8379 0.5481 14 6 2.2188 -5.6077 1.4900 15 1 3.1074 -6.1757 1.2143 16 6 1.7779 -5.8163 2.9602 17 7 0.9285 -4.6534 3.2725 18 6 -0.0353 -4.6136 4.2140 19 8 -0.6724 -3.5932 4.3886 20 6 -0.3130 -5.8085 5.0380 21 7 0.3785 -6.9258 4.8447 22 6 0.1666 -8.0105 5.5604 23 6 -0.7999 -8.0515 6.5500 24 6 -1.5619 -6.9175 6.7982 25 8 -2.5521 -6.6138 7.6550 26 6 -2.9594 -5.3438 7.4852 27 6 -2.2517 -4.7577 6.5057 28 6 -1.3112 -5.7669 6.0217 29 6 1.3121 -3.5420 2.3897 30 6 2.4116 -4.0580 1.4416 31 1 3.4116 -3.7410 1.7375 32 1 -0.4851 0.8400 -0.0004 33 1 0.3556 -2.3881 -0.0016 34 1 1.7033 -5.2707 -1.4318 35 1 0.2329 -4.4137 -0.8908 36 1 1.0380 -6.8507 0.1456 37 1 0.0803 -5.6600 1.0770 38 1 2.6461 -5.8383 3.6187 39 1 1.2059 -6.7393 3.0559 40 1 0.7597 -8.8922 5.3674 41 1 -0.9597 -8.9538 7.1216 42 1 -3.7428 -4.8646 8.0536 43 1 -2.3556 -3.7439 6.1482 44 1 0.4484 -3.2145 1.8109 45 1 1.6945 -2.7124 2.9846 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001026319515.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:55 Heat of formation + Delta-G solvation = 44.920380 kcal Electronic energy + Delta-G solvation = -29976.897152 eV Core-core repulsion = 25961.932701 eV Total energy + Delta-G solvation = -4014.964451 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 2.43 seconds Orbital eigenvalues (eV) -42.91582 -40.39605 -39.20131 -37.92256 -34.97159 -33.25580 -33.09627 -32.06947 -30.81631 -30.18273 -28.94480 -28.19971 -25.62977 -25.02875 -23.43082 -23.23228 -22.91153 -21.90003 -19.70737 -19.60985 -18.64400 -18.12759 -17.69201 -17.33785 -16.67249 -16.57317 -15.74844 -15.68394 -15.36126 -14.76904 -14.71056 -14.47024 -13.89022 -13.75000 -13.54146 -13.19183 -13.11548 -13.06299 -12.94839 -12.48639 -12.30437 -12.13563 -11.91385 -11.36611 -11.02125 -10.74436 -10.68150 -10.55563 -10.49797 -10.33379 -10.25224 -10.11883 -9.97469 -9.81442 -9.70235 -9.59394 -9.45373 -8.83368 -8.63813 -8.13016 -6.92213 -5.72834 -3.02409 0.13823 0.91261 2.07188 2.34441 2.79056 3.14420 3.47009 3.51592 3.52623 3.73930 3.95179 4.16278 4.29250 4.61069 4.62763 4.75601 4.76505 4.91291 5.02850 5.05125 5.18851 5.43005 5.49429 5.60359 5.60759 5.68009 5.70480 5.75682 5.81580 5.89231 5.97398 6.06254 6.12590 6.16995 6.25135 6.29412 6.38374 6.41685 6.63649 6.68325 6.68688 6.78278 6.88546 6.92294 7.05134 7.47269 7.73981 7.85927 8.39543 8.45143 9.56018 10.12826 10.46488 11.49198 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.014405 B = 0.003248 C = 0.002794 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1943.332275 B = 8619.876025 C =10020.154137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C -0.009 4.009 3 Si 0.905 3.095 4 H -0.287 1.287 5 H -0.292 1.292 6 H -0.286 1.286 7 C -0.243 4.243 8 H 0.070 0.930 9 N -0.717 5.717 10 C 0.181 3.819 11 H 0.051 0.949 12 C -0.130 4.130 13 C -0.110 4.110 14 C -0.110 4.110 15 H 0.097 0.903 16 C 0.107 3.893 17 N -0.591 5.591 18 C 0.572 3.428 19 O -0.526 6.526 20 C 0.151 3.849 21 N -0.458 5.458 22 C 0.106 3.894 23 C -0.142 4.142 24 C 0.080 3.920 25 O -0.190 6.190 26 C -0.001 4.001 27 C -0.171 4.171 28 C -0.136 4.136 29 C 0.128 3.872 30 C -0.118 4.118 31 H 0.080 0.920 32 H 0.256 0.744 33 H 0.384 0.616 34 H 0.061 0.939 35 H 0.065 0.935 36 H 0.058 0.942 37 H 0.063 0.937 38 H 0.061 0.939 39 H 0.102 0.898 40 H 0.174 0.826 41 H 0.147 0.853 42 H 0.216 0.784 43 H 0.175 0.825 44 H 0.092 0.908 45 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.166 -20.110 12.819 23.877 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.205 4.205 3 Si 0.736 3.264 4 H -0.213 1.213 5 H -0.218 1.218 6 H -0.213 1.213 7 C -0.374 4.374 8 H 0.088 0.912 9 N -0.358 5.358 10 C 0.070 3.930 11 H 0.069 0.931 12 C -0.168 4.168 13 C -0.148 4.148 14 C -0.129 4.129 15 H 0.115 0.885 16 C -0.016 4.016 17 N -0.322 5.322 18 C 0.358 3.642 19 O -0.402 6.402 20 C 0.008 3.992 21 N -0.171 5.171 22 C -0.047 4.047 23 C -0.163 4.163 24 C 0.025 3.975 25 O -0.090 6.090 26 C -0.065 4.065 27 C -0.191 4.191 28 C -0.140 4.140 29 C 0.007 3.993 30 C -0.140 4.140 31 H 0.099 0.901 32 H 0.066 0.934 33 H 0.219 0.781 34 H 0.080 0.920 35 H 0.084 0.916 36 H 0.076 0.924 37 H 0.081 0.919 38 H 0.079 0.921 39 H 0.120 0.880 40 H 0.191 0.809 41 H 0.164 0.836 42 H 0.232 0.768 43 H 0.193 0.807 44 H 0.110 0.890 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -0.950 -19.567 12.486 23.231 hybrid contribution -0.424 1.102 0.733 1.390 sum -1.374 -18.465 13.219 22.750 Atomic orbital electron populations 1.69646 1.05074 1.25823 1.57088 1.24731 0.95440 0.97632 1.02738 0.86307 0.78552 0.83773 0.77765 1.21339 1.21759 1.21287 1.19154 0.90918 0.84015 1.43335 0.91224 1.42548 1.05669 0.99685 1.87882 1.20811 0.94542 0.86254 0.91403 0.93108 1.22546 1.01034 0.95964 0.97273 1.22167 0.97812 0.98356 0.96471 1.23282 0.98421 0.97186 0.94048 0.88484 1.22607 0.94265 0.90011 0.94691 1.48440 1.33676 1.15592 1.34521 1.17258 0.80499 0.86321 0.80169 1.90815 1.49552 1.31390 1.68441 1.20854 0.91799 0.92970 0.93583 1.67995 1.25155 0.98933 1.25060 1.22680 0.94815 0.96584 0.90668 1.21155 0.96927 0.96568 1.01620 1.19716 0.90833 0.95753 0.91171 1.83963 1.43969 1.30011 1.51026 1.24272 1.00932 0.81237 1.00090 1.22793 0.96531 1.01447 0.98302 1.20637 0.99425 0.95107 0.98799 1.22010 0.99418 0.87178 0.90674 1.23568 0.97895 0.93169 0.99382 0.90131 0.93419 0.78086 0.92047 0.91603 0.92366 0.91872 0.92092 0.88030 0.80873 0.83554 0.76764 0.80739 0.89032 0.91919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.21 13.06 55.49 0.72 -27.49 16 2 C -0.01 -0.25 5.50 -17.43 -0.10 -0.35 16 3 Si 0.90 22.57 29.55 -169.99 -5.02 17.55 16 4 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 5 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 6 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 7 C -0.24 -6.62 9.95 -15.06 -0.15 -6.77 16 8 H 0.07 1.84 7.83 -52.49 -0.41 1.43 16 9 N -0.72 -17.48 3.61 -52.09 -0.19 -17.67 16 10 C 0.18 3.47 3.24 -66.55 -0.22 3.25 16 11 H 0.05 0.98 8.10 -51.93 -0.42 0.56 16 12 C -0.13 -2.10 6.64 -25.24 -0.17 -2.27 16 13 C -0.11 -1.56 5.90 -25.39 -0.15 -1.71 16 14 C -0.11 -1.49 4.22 -87.12 -0.37 -1.86 16 15 H 0.10 1.09 8.14 -51.93 -0.42 0.67 16 16 C 0.11 1.47 5.28 -2.58 -0.01 1.46 16 17 N -0.59 -10.28 2.88 -171.86 -0.50 -10.77 16 18 C 0.57 10.54 7.83 -12.36 -0.10 10.45 16 19 O -0.53 -11.37 15.53 5.32 0.08 -11.28 16 20 C 0.15 2.30 6.75 -82.80 -0.56 1.74 16 21 N -0.46 -5.70 6.60 -9.68 -0.06 -5.77 16 22 C 0.11 0.95 11.13 -17.56 -0.20 0.75 16 23 C -0.14 -1.25 10.13 -39.30 -0.40 -1.65 16 24 C 0.08 0.93 7.48 -38.29 -0.29 0.65 16 25 O -0.19 -2.04 10.57 4.98 0.05 -1.99 16 26 C 0.00 -0.01 11.97 29.34 0.35 0.34 16 27 C -0.17 -2.18 10.31 -37.78 -0.39 -2.57 16 28 C -0.14 -1.92 6.16 -104.90 -0.65 -2.57 16 29 C 0.13 2.56 5.41 -3.19 -0.02 2.54 16 30 C -0.12 -2.03 3.92 -87.84 -0.34 -2.37 16 31 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 32 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 33 H 0.38 10.19 6.93 -40.82 -0.28 9.90 16 34 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 35 H 0.07 1.18 7.69 -51.93 -0.40 0.78 16 36 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.06 1.01 7.39 -51.93 -0.38 0.63 16 38 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 39 H 0.10 1.30 5.80 -51.93 -0.30 1.00 16 40 H 0.17 0.85 8.06 -52.49 -0.42 0.43 16 41 H 0.15 0.80 8.06 -52.48 -0.42 0.38 16 42 H 0.22 1.02 8.06 -52.49 -0.42 0.60 16 43 H 0.18 2.37 7.29 -52.48 -0.38 1.98 16 44 H 0.09 2.13 6.16 -51.93 -0.32 1.81 16 45 H 0.06 1.39 8.14 -51.92 -0.42 0.97 16 LS Contribution 363.50 15.07 5.48 5.48 Total: -1.00 -33.65 363.50 -9.02 -42.67 By element: Atomic # 1 Polarization: 16.05 SS G_CDS: -5.84 Total: 10.21 kcal Atomic # 6 Polarization: 2.81 SS G_CDS: -3.74 Total: -0.93 kcal Atomic # 7 Polarization: -61.67 SS G_CDS: -0.02 Total: -61.70 kcal Atomic # 8 Polarization: -13.41 SS G_CDS: 0.14 Total: -13.27 kcal Atomic # 14 Polarization: 22.57 SS G_CDS: -5.02 Total: 17.55 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -33.65 -9.02 -42.67 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026319515.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.587 kcal (2) G-P(sol) polarization free energy of solvation -33.649 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.938 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.018 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.667 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.920 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.43 seconds