Wall clock time and date at job start Sat Apr 11 2020 06:19:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86790 * 119.99808 * 2 1 4 4 H 1.48506 * 109.47288 * 269.99844 * 3 2 1 5 5 H 1.48497 * 109.47578 * 30.00019 * 3 2 1 6 6 H 1.48498 * 109.47168 * 150.00252 * 3 2 1 7 7 C 1.38816 * 119.99702 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00097 * 0.02562 * 7 2 1 9 9 N 1.36937 * 119.99604 * 179.97438 * 7 2 1 10 10 C 1.46498 * 119.99920 * 180.02562 * 9 7 2 11 11 H 1.08998 * 110.57525 * 32.28415 * 10 9 7 12 12 C 1.56000 * 110.52519 * 269.56696 * 10 9 7 13 13 C 1.57068 * 106.03498 * 233.95568 * 12 10 9 14 14 C 1.51559 * 101.47697 * 335.33097 * 13 12 10 15 15 H 1.08999 * 111.11171 * 287.59128 * 14 13 12 16 16 C 1.51511 * 123.36559 * 151.80327 * 14 13 12 17 17 N 1.49628 * 102.49012 * 207.62630 * 16 14 13 18 18 C 1.34773 * 126.07326 * 205.65066 * 17 16 14 19 19 O 1.21564 * 120.00163 * 180.02562 * 18 17 16 20 20 C 1.47788 * 120.00142 * 0.02926 * 18 17 16 21 21 N 1.32818 * 120.06802 * 359.93158 * 20 18 17 22 22 C 1.31678 * 122.01008 * 180.02562 * 21 20 18 23 23 C 1.38395 * 121.69826 * 0.02562 * 22 21 20 24 24 C 1.38855 * 119.13349 * 359.97438 * 23 22 21 25 25 O 1.34430 * 134.62919 * 179.97438 * 24 23 22 26 26 C 1.34455 * 110.85011 * 179.97438 * 25 24 23 27 27 C 1.34308 * 110.16604 * 0.02562 * 26 25 24 28 28 C 1.40195 * 120.07423 * 179.97438 * 20 18 17 29 29 C 1.49287 * 107.85625 * 25.91639 * 17 16 14 30 30 C 1.49655 * 104.71035 * 5.98106 * 29 17 16 31 31 H 1.09005 * 107.62592 * 78.67085 * 30 29 17 32 32 H 0.97004 * 120.00079 * 0.02562 * 1 2 3 33 33 H 0.96997 * 119.99898 * 0.02562 * 9 7 2 34 34 H 1.09002 * 110.19104 * 353.48743 * 12 10 9 35 35 H 1.08998 * 110.18999 * 115.26150 * 12 10 9 36 36 H 1.09002 * 111.32270 * 217.22761 * 13 12 10 37 37 H 1.08999 * 110.91803 * 93.25879 * 13 12 10 38 38 H 1.08999 * 110.80455 * 89.37567 * 16 14 13 39 39 H 1.08997 * 110.97115 * 325.94893 * 16 14 13 40 40 H 1.07996 * 119.14826 * 180.29464 * 22 21 20 41 41 H 1.08000 * 120.42734 * 180.02562 * 23 22 21 42 42 H 1.07995 * 124.91632 * 179.97438 * 26 25 24 43 43 H 1.07995 * 126.89492 * 179.97438 * 27 26 25 44 44 H 1.08994 * 110.39978 * 124.91858 * 29 17 16 45 45 H 1.09002 * 110.39441 * 247.32408 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4476 2.6526 0.7000 6 1 3.5477 1.4402 0.7000 7 6 2.0102 -1.2022 0.0005 8 1 1.4702 -2.1375 0.0005 9 7 3.3796 -1.2022 0.0000 10 6 4.1121 -2.4709 0.0000 11 1 3.5563 -3.2341 -0.5447 12 6 4.3957 -2.9387 1.4609 13 6 5.9454 -3.1802 1.5460 14 6 6.2879 -3.4547 0.0954 15 1 5.9261 -4.4350 -0.2147 16 6 7.6436 -3.1560 -0.5116 17 7 7.3089 -2.9197 -1.9507 18 6 8.1410 -3.0893 -2.9972 19 8 7.7515 -2.8631 -4.1263 20 6 9.5269 -3.5504 -2.7721 21 7 9.9543 -3.7966 -1.5389 22 6 11.1810 -4.2082 -1.2945 23 6 12.0975 -4.4076 -2.3122 24 6 11.7130 -4.1679 -3.6247 25 8 12.3246 -4.2542 -4.8188 26 6 11.4890 -3.9010 -5.8111 27 6 10.2892 -3.5659 -5.3089 28 6 10.3937 -3.7278 -3.8597 29 6 5.8914 -2.4563 -2.0208 30 6 5.4748 -2.2903 -0.5931 31 1 5.8856 -1.3455 -0.2371 32 1 -0.4850 0.8401 -0.0004 33 1 3.8646 -0.3622 -0.0004 34 1 4.0911 -2.1678 2.1687 35 1 3.8663 -3.8688 1.6676 36 1 6.1785 -4.0420 2.1715 37 1 6.4590 -2.2888 1.9060 38 1 8.3123 -4.0101 -0.4049 39 1 8.0830 -2.2641 -0.0649 40 1 11.4783 -4.3992 -0.2740 41 1 13.0984 -4.7461 -2.0884 42 1 11.7456 -3.8877 -6.8600 43 1 9.4217 -3.2411 -5.8641 44 1 5.8283 -1.5055 -2.5499 45 1 5.2704 -3.2065 -2.5105 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001026319516.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:00 Heat of formation + Delta-G solvation = 58.244636 kcal Electronic energy + Delta-G solvation = -29252.007759 eV Core-core repulsion = 25237.621091 eV Total energy + Delta-G solvation = -4014.386668 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -43.08789 -40.68069 -39.50835 -38.29211 -35.44806 -33.46454 -33.28963 -32.30813 -31.15344 -30.44742 -29.39853 -28.62557 -25.81334 -25.23545 -23.46367 -23.28230 -22.62026 -22.01695 -20.26569 -19.83821 -19.23717 -18.31509 -17.92228 -17.47450 -16.84648 -16.73177 -16.38283 -15.77189 -15.45629 -15.03233 -14.68335 -14.66468 -14.26080 -14.04200 -13.87705 -13.44779 -13.31341 -13.25179 -12.89192 -12.67108 -12.51281 -12.21578 -11.91527 -11.86004 -11.56591 -11.08091 -10.85949 -10.80316 -10.73547 -10.53388 -10.40412 -10.34076 -10.02284 -9.88448 -9.80763 -9.63966 -9.51653 -8.92655 -8.85569 -8.57034 -7.27353 -5.76547 -3.12320 -0.05147 0.74443 1.89071 2.18093 2.53489 2.71078 3.38223 3.41485 3.46477 3.51564 3.71695 3.92271 4.11243 4.17437 4.44381 4.59325 4.59709 4.76434 4.81960 4.90930 5.04833 5.25025 5.27349 5.32087 5.37425 5.44331 5.52847 5.55079 5.63138 5.72217 5.79026 5.81714 5.89458 5.95218 5.98397 6.08051 6.08450 6.16910 6.23466 6.37351 6.40951 6.51419 6.58842 6.73669 6.96261 7.27229 7.45094 7.99797 8.03446 8.42738 9.20596 9.93228 10.12572 11.41754 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.019543 B = 0.002578 C = 0.002392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1432.358629 B =10860.051323 C =11705.244057 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.005 3.995 3 Si 0.883 3.117 4 H -0.284 1.284 5 H -0.292 1.292 6 H -0.277 1.277 7 C -0.243 4.243 8 H 0.091 0.909 9 N -0.745 5.745 10 C 0.205 3.795 11 H 0.065 0.935 12 C -0.142 4.142 13 C -0.100 4.100 14 C -0.127 4.127 15 H 0.086 0.914 16 C 0.121 3.879 17 N -0.602 5.602 18 C 0.580 3.420 19 O -0.532 6.532 20 C 0.146 3.854 21 N -0.457 5.457 22 C 0.107 3.893 23 C -0.138 4.138 24 C 0.080 3.920 25 O -0.189 6.189 26 C 0.003 3.997 27 C -0.175 4.175 28 C -0.134 4.134 29 C 0.132 3.868 30 C -0.127 4.127 31 H 0.072 0.928 32 H 0.259 0.741 33 H 0.361 0.639 34 H 0.073 0.927 35 H 0.058 0.942 36 H 0.063 0.937 37 H 0.065 0.935 38 H 0.105 0.895 39 H 0.070 0.930 40 H 0.176 0.824 41 H 0.149 0.851 42 H 0.217 0.783 43 H 0.174 0.826 44 H 0.076 0.924 45 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 28.310 -11.164 -4.365 30.743 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.191 4.191 3 Si 0.713 3.287 4 H -0.211 1.211 5 H -0.218 1.218 6 H -0.203 1.203 7 C -0.373 4.373 8 H 0.109 0.891 9 N -0.386 5.386 10 C 0.095 3.905 11 H 0.083 0.917 12 C -0.183 4.183 13 C -0.138 4.138 14 C -0.146 4.146 15 H 0.104 0.896 16 C 0.000 4.000 17 N -0.335 5.335 18 C 0.367 3.633 19 O -0.409 6.409 20 C 0.003 3.997 21 N -0.170 5.170 22 C -0.046 4.046 23 C -0.158 4.158 24 C 0.025 3.975 25 O -0.088 6.088 26 C -0.061 4.061 27 C -0.195 4.195 28 C -0.138 4.138 29 C 0.012 3.988 30 C -0.147 4.147 31 H 0.090 0.910 32 H 0.069 0.931 33 H 0.194 0.806 34 H 0.092 0.908 35 H 0.077 0.923 36 H 0.081 0.919 37 H 0.083 0.917 38 H 0.123 0.877 39 H 0.088 0.912 40 H 0.193 0.807 41 H 0.166 0.834 42 H 0.233 0.767 43 H 0.192 0.808 44 H 0.094 0.906 45 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 27.596 -11.058 -4.396 30.052 hybrid contribution 1.061 1.243 -0.705 1.780 sum 28.656 -9.815 -5.102 30.717 Atomic orbital electron populations 1.69701 1.05107 1.25807 1.57508 1.24671 0.95212 0.97174 1.02024 0.86576 0.79186 0.85091 0.77821 1.21072 1.21799 1.20342 1.19086 0.80548 0.94709 1.42976 0.89126 1.42866 1.04075 1.01794 1.89896 1.19896 0.88472 0.89607 0.92574 0.91702 1.23871 0.93059 1.01304 1.00017 1.21972 0.97350 1.00868 0.93640 1.22650 0.95356 0.99468 0.97171 0.89564 1.22083 0.96394 1.02636 0.78876 1.49680 1.12662 1.64048 1.07091 1.17286 0.83307 0.78766 0.83986 1.90783 1.75994 1.52064 1.22055 1.20696 0.94183 0.97239 0.87583 1.67968 1.16617 1.11619 1.20785 1.22699 0.87631 0.94914 0.99391 1.21202 1.02877 1.04152 0.87602 1.19717 0.90962 0.99595 0.87193 1.83981 1.40011 1.71798 1.13059 1.24301 0.88717 1.00152 0.92961 1.22753 0.99591 1.05617 0.91490 1.20620 0.94278 1.03669 0.95264 1.21047 0.80146 1.00370 0.97285 1.22116 0.99148 0.99434 0.94017 0.90989 0.93072 0.80571 0.90799 0.92289 0.91866 0.91666 0.87740 0.91203 0.80683 0.83372 0.76710 0.80827 0.90568 0.90775 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.22 13.97 55.49 0.78 -28.45 16 2 C 0.00 0.14 5.50 -17.43 -0.10 0.05 16 3 Si 0.88 22.10 27.73 -169.99 -4.71 17.38 16 4 H -0.28 -7.13 7.11 56.52 0.40 -6.73 16 5 H -0.29 -7.42 7.11 56.52 0.40 -7.01 16 6 H -0.28 -6.51 6.52 56.52 0.37 -6.14 16 7 C -0.24 -6.73 10.44 -15.06 -0.16 -6.88 16 8 H 0.09 2.68 8.06 -52.49 -0.42 2.26 16 9 N -0.74 -17.08 4.90 -53.45 -0.26 -17.35 16 10 C 0.21 3.74 3.45 -67.96 -0.23 3.51 16 11 H 0.06 1.24 8.09 -51.93 -0.42 0.82 16 12 C -0.14 -2.25 6.75 -22.92 -0.15 -2.41 16 13 C -0.10 -1.23 6.71 -25.25 -0.17 -1.39 16 14 C -0.13 -1.58 3.10 -89.46 -0.28 -1.86 16 15 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 16 C 0.12 1.45 5.75 -3.05 -0.02 1.43 16 17 N -0.60 -8.65 3.42 -172.74 -0.59 -9.24 16 18 C 0.58 8.87 7.86 -12.36 -0.10 8.77 16 19 O -0.53 -9.37 15.57 5.31 0.08 -9.29 16 20 C 0.15 1.89 6.75 -82.80 -0.56 1.33 16 21 N -0.46 -4.88 6.66 -9.68 -0.06 -4.95 16 22 C 0.11 0.80 11.13 -17.56 -0.20 0.60 16 23 C -0.14 -1.00 10.13 -39.30 -0.40 -1.40 16 24 C 0.08 0.79 7.48 -38.29 -0.29 0.51 16 25 O -0.19 -1.71 10.57 4.95 0.05 -1.66 16 26 C 0.00 0.02 11.97 29.35 0.35 0.37 16 27 C -0.17 -1.82 10.31 -37.77 -0.39 -2.21 16 28 C -0.13 -1.61 6.16 -104.90 -0.65 -2.26 16 29 C 0.13 2.05 6.82 -4.15 -0.03 2.02 16 30 C -0.13 -1.95 2.20 -91.26 -0.20 -2.15 16 31 H 0.07 1.15 7.76 -51.93 -0.40 0.75 16 32 H 0.26 7.75 8.31 -40.82 -0.34 7.41 16 33 H 0.36 8.24 5.52 -40.82 -0.23 8.02 16 34 H 0.07 1.32 7.98 -51.93 -0.41 0.90 16 35 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 36 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.10 1.15 5.93 -51.93 -0.31 0.84 16 39 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 40 H 0.18 0.65 8.06 -52.49 -0.42 0.22 16 41 H 0.15 0.61 8.06 -52.49 -0.42 0.19 16 42 H 0.22 0.62 8.06 -52.49 -0.42 0.19 16 43 H 0.17 1.86 7.29 -52.49 -0.38 1.48 16 44 H 0.08 1.26 8.14 -51.93 -0.42 0.83 16 45 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 LS Contribution 366.19 15.07 5.52 5.52 Total: -1.00 -34.35 366.19 -8.73 -43.08 By element: Atomic # 1 Polarization: 12.88 SS G_CDS: -5.97 Total: 6.91 kcal Atomic # 6 Polarization: 1.60 SS G_CDS: -3.56 Total: -1.96 kcal Atomic # 7 Polarization: -59.84 SS G_CDS: -0.14 Total: -59.98 kcal Atomic # 8 Polarization: -11.08 SS G_CDS: 0.13 Total: -10.95 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -4.71 Total: 17.38 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -34.35 -8.73 -43.08 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026319516.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.328 kcal (2) G-P(sol) polarization free energy of solvation -34.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.978 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.084 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds